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author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-08-11 17:25:26 -0500 |
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committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-08-11 17:25:26 -0500 |
commit | 9e7917f7d3f0ec46bc43acdd1a789f86bdc97b0b (patch) | |
tree | 396a7216c694428e7ff2e94850d77ae63691f11a /var | |
parent | 14076c52f13977381b273e433c0e5de82b9fe28c (diff) | |
download | spack-9e7917f7d3f0ec46bc43acdd1a789f86bdc97b0b.tar.gz spack-9e7917f7d3f0ec46bc43acdd1a789f86bdc97b0b.tar.bz2 spack-9e7917f7d3f0ec46bc43acdd1a789f86bdc97b0b.tar.xz spack-9e7917f7d3f0ec46bc43acdd1a789f86bdc97b0b.zip |
mpest: new package (#5064)
* mpest: new package
* adding architecture env var and making more version-flexible
* fixing environment
* fixed build directory
* getting rid of duplicated code
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/mpest/package.py | 50 |
1 files changed, 50 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/mpest/package.py b/var/spack/repos/builtin/packages/mpest/package.py new file mode 100644 index 0000000000..a00eb37bb8 --- /dev/null +++ b/var/spack/repos/builtin/packages/mpest/package.py @@ -0,0 +1,50 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Mpest(MakefilePackage): + """MP-EST estimates species trees from a set of gene trees by maximizing + a pseudo-likelihood function.""" + + homepage = "http://faculty.franklin.uga.edu/lliu/content/mp-est" + url = "https://faculty.franklin.uga.edu/lliu/sites/faculty.franklin.uga.edu.lliu/files/mpest_1.5.zip" + + version('1.5', 'f176d5301aa26567918664e5e30027d1') + + @property + def build_directory(self): + return join_path('mpest_{0}'.format(self.version), 'src') + + def install(self, spec, prefix): + with working_dir(self.build_directory): + mkdirp(prefix.bin) + install('mpest', prefix.bin) + + def setup_environment(self, spack_env, run_env): + if self.spec.satisfies('platform=darwin'): + spack_env.set('ARCHITECTURE', 'mac') + else: + spack_env.set('ARCHITECTURE', 'unix') |