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| author | George Young <A-N-Other@users.noreply.github.com> | 2023-06-21 20:43:48 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-06-21 15:43:48 -0400 |
| commit | 12a22eebc76bfec6c6172f0e4069d2cb4b6cab6f (patch) | |
| tree | 9d3a23e7425cb3575bb4b60b81f7f3d6982a5c04 /var | |
| parent | 69eb15936cc0b604b9388d6bd09db388d698ce0d (diff) | |
| download | spack-12a22eebc76bfec6c6172f0e4069d2cb4b6cab6f.tar.gz spack-12a22eebc76bfec6c6172f0e4069d2cb4b6cab6f.tar.bz2 spack-12a22eebc76bfec6c6172f0e4069d2cb4b6cab6f.tar.xz spack-12a22eebc76bfec6c6172f0e4069d2cb4b6cab6f.zip | |
tetranscripts: new package @2.2.3 (#38485)
* tetranscripts: new package @2.2.3
* tidying up
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/tetranscripts/package.py | 23 |
1 files changed, 23 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/tetranscripts/package.py b/var/spack/repos/builtin/packages/tetranscripts/package.py new file mode 100644 index 0000000000..a01f26c1dc --- /dev/null +++ b/var/spack/repos/builtin/packages/tetranscripts/package.py @@ -0,0 +1,23 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class Tetranscripts(PythonPackage): + """TEtranscripts: Tools for estimating differential enrichment of Transposable Elements + and other highly repetitive regions.""" + + homepage = "https://hammelllab.labsites.cshl.edu/software/#TEtranscripts" + pypi = "TEtranscripts/TEtranscripts-2.2.3.tar.gz" + + version("2.2.3", sha256="e53577e8e73e41c6495fb819977e3e537bbeac7b2fa1635029201a37ee0bf7b8") + + # python dependencies + depends_on("py-setuptools", type="build") + depends_on("py-pysam@0.9:", type=("build", "run")) + # external dependencies + depends_on("r@2.15:", type="run") + depends_on("r-deseq2@1.10:", type="run") |