r-diversitree: new package (#9893)

* r-diversitree: new package

* r-diversitree: system reqs

1 files changed, 33 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-diversitree/package.py b/var/spack/repos/builtin/packages/r-diversitree/package.py
new file mode 100644
index 0000000000..e6e1746022
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-diversitree/package.py
@@ -0,0 +1,33 @@
+# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+from spack import *
+
+
+class RDiversitree(RPackage):
+    """Contains a number of comparative 'phylogenetic' methods.
+
+       Mostly focusing on analysing diversification and character
+       evolution. Contains implementations of 'BiSSE' (Binary State
+       'Speciation' and Extinction) and its unresolved tree extensions,
+       'MuSSE' (Multiple State 'Speciation' and Extinction), 'QuaSSE',
+       'GeoSSE', and 'BiSSE-ness' Other included methods include Markov
+       models of discrete and continuous trait evolution and constant
+       rate 'speciation' and extinction."""
+
+    homepage = "http://www.zoology.ubc.ca/prog/diversitree"
+    url      = "https://cran.r-project.org/src/contrib/diversitree_0.9-10.tar.gz"
+    list_url = "https://cron.r-project.org/src/contrib/Archive/diversitree"
+
+    version('0.9-10', sha256='e7df5910c8508a5c2c2d6d3deea53dd3f947bb762196901094c32a7033cb043e')
+
+    depends_on('r@2.1.0:', type=('build', 'run'))
+    depends_on('r-ape', type=('build', 'run'))
+    depends_on('r-desolve@1.7:', type=('build', 'run'))
+    depends_on('r-subplex', type=('build', 'run'))
+    depends_on('r-rcpp@0.10.0:', type=('build', 'run'))
+    depends_on('fftw@3.1.2:')
+    depends_on('gsl@1.15:')