Merge branch 'develop' of ssh://cz-stash.llnl.gov:7999/scale/spack into develop

20 files changed, 50 insertions, 5 deletions

diff --git a/var/spack/packages/py-cython/package.py b/var/spack/packages/py-cython/package.py
index af67a15526..68eb735ad9 100644
--- a/var/spack/packages/py-cython/package.py
+++ b/var/spack/packages/py-cython/package.py
@@ -3,9 +3,10 @@ from spack import *
 class PyCython(Package):
     """The Cython compiler for writing C extensions for the Python language."""
     homepage = "https://pypi.python.org/pypi/cython"
-    url      = "https://pypi.python.org/packages/source/C/Cython/Cython-0.21.2.tar.gz"
+    url      = "https://pypi.python.org/packages/source/C/Cython/cython-0.22.tar.gz"
 
     version('0.21.2', 'd21adb870c75680dc857cd05d41046a4')
+    version('0.22', '1ae25add4ef7b63ee9b4af697300d6b6')
 
     extends('python')
 
diff --git a/var/spack/packages/py-dateutil/package.py b/var/spack/packages/py-dateutil/package.py
index 3bd2f2ca13..0a17f2f2d2 100644
--- a/var/spack/packages/py-dateutil/package.py
+++ b/var/spack/packages/py-dateutil/package.py
@@ -6,6 +6,7 @@ class PyDateutil(Package):
     url      = "https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.4.0.tar.gz"
 
     version('2.4.0', '75714163bb96bedd07685cdb2071b8bc')
+    version('2.4.2', '4ef68e1c485b09e9f034e10473e5add2')
 
     extends('python')
     depends_on('py-setuptools')
diff --git a/var/spack/packages/py-genders/package.py b/var/spack/packages/py-genders/package.py
new file mode 100644
index 0000000000..c49c8fd5b2
--- /dev/null
+++ b/var/spack/packages/py-genders/package.py
@@ -0,0 +1,15 @@
+from spack import *
+
+class PyGenders(Package):
+    """Genders is a static cluster configuration database used for cluster configuration management. It is used by a variety of tools and scripts for management of large clusters."""
+    homepage = "https://github.com/chaos/genders"
+    url      = "https://github.com/chaos/genders/releases/download/genders-1-22-1/genders-1.22.tar.gz"
+
+    version('1.22', '9ea59a024dcbddb85b0ed25ddca9bc8e', url='https://github.com/chaos/genders/releases/download/genders-1-22-1/genders-1.22.tar.gz')
+    extends('python')
+
+    def install(self, spec, prefix):
+        configure("--prefix=%s" %prefix)
+        make(parallel=False)
+        make("install")
+
diff --git a/var/spack/packages/py-h5py/package.py b/var/spack/packages/py-h5py/package.py
index f72b3ac06e..6293da5407 100644
--- a/var/spack/packages/py-h5py/package.py
+++ b/var/spack/packages/py-h5py/package.py
@@ -7,8 +7,9 @@ class PyH5py(Package):
     url      = "https://pypi.python.org/packages/source/h/h5py/h5py-2.4.0.tar.gz"
 
     version('2.4.0', '80c9a94ae31f84885cc2ebe1323d6758')
+    version('2.5.0', '6e4301b5ad5da0d51b0a1e5ac19e3b74')
 
-    extends('python', ignore=lambda f: re.match(r'cy*', f))
+    extends('python', ignore=lambda f: re.match(r'bin/cy*', f))
     depends_on('hdf5')
     depends_on('py-numpy')
     depends_on('py-cython')
diff --git a/var/spack/packages/py-ipython/package.py b/var/spack/packages/py-ipython/package.py
index 907ea9edcd..8d0e64a07f 100644
--- a/var/spack/packages/py-ipython/package.py
+++ b/var/spack/packages/py-ipython/package.py
@@ -6,6 +6,7 @@ class PyIpython(Package):
     url      = "https://pypi.python.org/packages/source/i/ipython/ipython-2.3.1.tar.gz"
 
     version('2.3.1', '2b7085525dac11190bfb45bb8ec8dcbf')
+    version('3.1.0', 'a749d90c16068687b0ec45a27e72ef8f')
 
     extends('python')
     depends_on('py-pygments')
diff --git a/var/spack/packages/py-matplotlib/package.py b/var/spack/packages/py-matplotlib/package.py
index 04037f004e..e7ce3dfd24 100644
--- a/var/spack/packages/py-matplotlib/package.py
+++ b/var/spack/packages/py-matplotlib/package.py
@@ -7,6 +7,7 @@ class PyMatplotlib(Package):
     url      = "https://pypi.python.org/packages/source/m/matplotlib/matplotlib-1.4.2.tar.gz"
 
     version('1.4.2', '7d22efb6cce475025733c50487bd8898')
+    version('1.4.3', '86af2e3e3c61849ac7576a6f5ca44267')
 
     extends('python', ignore=r'bin/nosetests.*$')
 
@@ -28,7 +29,7 @@ class PyMatplotlib(Package):
     def install(self, spec, prefix):
         python('setup.py', 'install', '--prefix=%s' % prefix)
 
-        if str(self.version) == '1.4.2':
+        if str(self.version) in ['1.4.2', '1.4.3']:
             # hack to fix configuration file
             config_file = None
             for p,d,f in os.walk(prefix.lib):
diff --git a/var/spack/packages/py-nose/package.py b/var/spack/packages/py-nose/package.py
index 155019289d..e7c6cf0264 100644
--- a/var/spack/packages/py-nose/package.py
+++ b/var/spack/packages/py-nose/package.py
@@ -8,6 +8,7 @@ class PyNose(Package):
     url      = "https://pypi.python.org/packages/source/n/nose/nose-1.3.4.tar.gz"
 
     version('1.3.4', '6ed7169887580ddc9a8e16048d38274d')
+    version('1.3.6', '0ca546d81ca8309080fc80cb389e7a16')
 
     extends('python', ignore=r'bin/nosetests.*$')
     depends_on('py-setuptools')
diff --git a/var/spack/packages/py-numpy/package.py b/var/spack/packages/py-numpy/package.py
index e6cb6a464f..6534e063d2 100644
--- a/var/spack/packages/py-numpy/package.py
+++ b/var/spack/packages/py-numpy/package.py
@@ -6,6 +6,7 @@ class PyNumpy(Package):
     url      = "https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz"
 
     version('1.9.1', '78842b73560ec378142665e712ae4ad9')
+    version('1.9.2', 'a1ed53432dbcd256398898d35bc8e645')
 
     extends('python')
     depends_on('py-nose')
diff --git a/var/spack/packages/py-pandas/package.py b/var/spack/packages/py-pandas/package.py
index 2f441f0d22..acbb5114a3 100644
--- a/var/spack/packages/py-pandas/package.py
+++ b/var/spack/packages/py-pandas/package.py
@@ -7,6 +7,7 @@ class PyPandas(Package):
     url      = "https://pypi.python.org/packages/source/p/pandas/pandas-0.16.0.tar.gz#md5=bfe311f05dc0c351f8955fbd1e296e73"
 
     version('0.16.0', 'bfe311f05dc0c351f8955fbd1e296e73')
+    version('0.16.1', 'fac4f25748f9610a3e00e765474bdea8')
 
     extends('python')
     depends_on('py-dateutil')
diff --git a/var/spack/packages/py-pygments/package.py b/var/spack/packages/py-pygments/package.py
index 990eebde65..7e07bf6869 100644
--- a/var/spack/packages/py-pygments/package.py
+++ b/var/spack/packages/py-pygments/package.py
@@ -6,6 +6,7 @@ class PyPygments(Package):
     url      = "https://pypi.python.org/packages/source/P/Pygments/Pygments-2.0.1.tar.gz"
 
     version('2.0.1', 'e0daf4c14a4fe5b630da765904de4d6c')
+    version('2.0.2', '238587a1370d62405edabd0794b3ec4a')
 
     extends('python')
     depends_on('py-setuptools')
diff --git a/var/spack/packages/py-pylint/package.py b/var/spack/packages/py-pylint/package.py
index 7a6ee7dbbc..9579708c29 100644
--- a/var/spack/packages/py-pylint/package.py
+++ b/var/spack/packages/py-pylint/package.py
@@ -7,6 +7,7 @@ class PyPylint(Package):
     url      = "https://pypi.python.org/packages/source/p/pylint/pylint-1.4.1.tar.gz"
 
     version('1.4.1', 'df7c679bdcce5019389038847e4de622')
+    version('1.4.3', '5924c1c7ca5ca23647812f5971d0ea44')
 
     extends('python')
     depends_on('py-nose')
diff --git a/var/spack/packages/py-pypar/package.py b/var/spack/packages/py-pypar/package.py
new file mode 100644
index 0000000000..af9c76ccd8
--- /dev/null
+++ b/var/spack/packages/py-pypar/package.py
@@ -0,0 +1,14 @@
+from spack import *
+
+class PyPypar(Package):
+    """Pypar is an efficient but easy-to-use module that allows programs written in Python to run in parallel on multiple processors and communicate using MPI."""
+    homepage = "http://code.google.com/p/pypar/"
+    url      = "https://pypar.googlecode.com/files/pypar-2.1.5_108.tgz"
+
+    version('2.1.5_108', '7a1f28327d2a3b679f9455c843d850b8', url='https://pypar.googlecode.com/files/pypar-2.1.5_108.tgz')
+    extends('python')
+    depends_on('mpi')
+
+    def install(self, spec, prefix):
+        with working_dir('source'):
+            python('setup.py', 'install', '--prefix=%s' % prefix)
diff --git a/var/spack/packages/py-pytz/package.py b/var/spack/packages/py-pytz/package.py
index 80bcfe82ca..da6311a784 100644
--- a/var/spack/packages/py-pytz/package.py
+++ b/var/spack/packages/py-pytz/package.py
@@ -6,6 +6,7 @@ class PyPytz(Package):
     url      = "https://pypi.python.org/packages/source/p/pytz/pytz-2014.10.tar.gz"
 
     version('2014.10', 'eb1cb941a20c5b751352c52486aa1dd7')
+    version('2015.4', '417a47b1c432d90333e42084a605d3d8')
 
     extends('python')
 
diff --git a/var/spack/packages/py-rpy2/package.py b/var/spack/packages/py-rpy2/package.py
index dd0c0672af..a0b03d03e3 100644
--- a/var/spack/packages/py-rpy2/package.py
+++ b/var/spack/packages/py-rpy2/package.py
@@ -6,6 +6,7 @@ class PyRpy2(Package):
     url      = "https://pypi.python.org/packages/source/r/rpy2/rpy2-2.5.4.tar.gz"
 
     version('2.5.4', '115a20ac30883f096da2bdfcab55196d')
+    version('2.5.6', 'a36e758b633ce6aec6a5f450bfee980f')
 
     extends('python')
     depends_on('py-setuptools')
diff --git a/var/spack/packages/py-scientificpython/package.py b/var/spack/packages/py-scientificpython/package.py
index 020d830703..df2c86caac 100644
--- a/var/spack/packages/py-scientificpython/package.py
+++ b/var/spack/packages/py-scientificpython/package.py
@@ -7,8 +7,7 @@ class PyScientificpython(Package):
        visualization, and parallelization."""
 
     homepage = "https://sourcesup.renater.fr/projects/scientific-py/"
-    url      = "https://sourcesup.renater.fr/frs/download.php/4411/ScientificPython-2.8.1.tar.gz"
-
+    url      = "https://sourcesup.renater.fr/frs/download.php/file/4411/ScientificPython-2.8.1.tar.gz"
     version('2.8.1', '73ee0df19c7b58cdf2954261f0763c77')
 
     extends('python')
diff --git a/var/spack/packages/py-scikit-learn/package.py b/var/spack/packages/py-scikit-learn/package.py
index c59c05a619..5b078ce901 100644
--- a/var/spack/packages/py-scikit-learn/package.py
+++ b/var/spack/packages/py-scikit-learn/package.py
@@ -6,6 +6,7 @@ class PyScikitLearn(Package):
     url      = "https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz"
 
     version('0.15.2', 'd9822ad0238e17b382a3c756ea94fe0d')
+    version('0.16.1', '363ddda501e3b6b61726aa40b8dbdb7e')
 
     extends('python')
 
diff --git a/var/spack/packages/py-scipy/package.py b/var/spack/packages/py-scipy/package.py
index b5325b919f..cdcf74534b 100644
--- a/var/spack/packages/py-scipy/package.py
+++ b/var/spack/packages/py-scipy/package.py
@@ -6,6 +6,7 @@ class PyScipy(Package):
     url      = "https://pypi.python.org/packages/source/s/scipy/scipy-0.15.0.tar.gz"
 
     version('0.15.0', '639112f077f0aeb6d80718dc5019dc7a')
+    version('0.15.1', 'be56cd8e60591d6332aac792a5880110')
 
     extends('python')
     depends_on('py-nose')
diff --git a/var/spack/packages/py-setuptools/package.py b/var/spack/packages/py-setuptools/package.py
index 755288d55c..d3f11ed469 100644
--- a/var/spack/packages/py-setuptools/package.py
+++ b/var/spack/packages/py-setuptools/package.py
@@ -6,6 +6,7 @@ class PySetuptools(Package):
     url      = "https://pypi.python.org/packages/source/s/setuptools/setuptools-11.3.tar.gz"
 
     version('11.3.1', '01f69212e019a2420c1693fb43593930')
+    version('16.0', '0ace0b96233516fc5f7c857d086aa3ad')
 
     extends('python')
 
diff --git a/var/spack/packages/py-sip/package.py b/var/spack/packages/py-sip/package.py
index 6753bdd2a5..e4a6fb6961 100644
--- a/var/spack/packages/py-sip/package.py
+++ b/var/spack/packages/py-sip/package.py
@@ -7,6 +7,7 @@ class PySip(Package):
     url      = "http://sourceforge.net/projects/pyqt/files/sip/sip-4.16.5/sip-4.16.5.tar.gz"
 
     version('4.16.5', '6d01ea966a53e4c7ae5c5e48c40e49e5')
+    version('4.16.7', '32abc003980599d33ffd789734de4c36')
 
     extends('python')
 
diff --git a/var/spack/packages/py-virtualenv/package.py b/var/spack/packages/py-virtualenv/package.py
index 2d10d440a6..037a6fc59f 100644
--- a/var/spack/packages/py-virtualenv/package.py
+++ b/var/spack/packages/py-virtualenv/package.py
@@ -7,6 +7,7 @@ class PyVirtualenv(Package):
     url      = "https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.11.6.tar.gz"
 
     version('1.11.6', 'f61cdd983d2c4e6aeabb70b1060d6f49')
+    version('13.0.1', '1ffc011bde6667f0e37ecd976f4934db')
 
     extends('python')
     depends_on('py-setuptools')