smalt: new package (#4853)

1 files changed, 34 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/smalt/package.py b/var/spack/repos/builtin/packages/smalt/package.py
new file mode 100644
index 0000000000..c19f3d040a
--- /dev/null
+++ b/var/spack/repos/builtin/packages/smalt/package.py
@@ -0,0 +1,34 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Smalt(AutotoolsPackage):
+    """SMALT aligns DNA sequencing reads with a reference genome."""
+
+    homepage = "http://www.sanger.ac.uk/science/tools/smalt-0"
+    url      = "https://downloads.sourceforge.net/project/smalt/smalt-0.7.6.tar.gz"
+
+    version('0.7.6', 'c3215d70ba960c8fdc8e80191695c60b')