dialign-tx: new package (#5126)

* dialign-tx: new package

* utilizing build_directory variable

* forgot one

1 files changed, 50 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/dialign-tx/package.py b/var/spack/repos/builtin/packages/dialign-tx/package.py
new file mode 100644
index 0000000000..ccb094605e
--- /dev/null
+++ b/var/spack/repos/builtin/packages/dialign-tx/package.py
@@ -0,0 +1,50 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class DialignTx(MakefilePackage):
+    """DIALIGN-TX: greedy and progressive approaches for segment-based
+       multiple sequence alignment"""
+
+    homepage = "http://dialign-tx.gobics.de/"
+    url      = "http://dialign-tx.gobics.de/DIALIGN-TX_1.0.2.tar.gz"
+
+    version('1.0.2', '8ccfb1d91136157324d1e513f184ca29')
+
+    build_directory = 'source'
+
+    conflicts('%gcc@6:')
+
+    def edit(self, spec, prefix):
+        with working_dir(self.build_directory):
+            makefile = FileFilter('Makefile')
+            makefile.filter(' -march=i686 ', ' ')
+            makefile.filter('CC=gcc', 'CC=%s' % spack_cc)
+
+    def install(self, spec, prefix):
+        mkdirp(prefix.bin)
+        with working_dir(self.build_directory):
+            install('dialign-tx', prefix.bin)