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| author | Justin Stanley <molecuul@users.noreply.github.com> | 2019-03-01 10:09:23 -0600 |
|---|---|---|
| committer | Levi Baber <baberlevi@gmail.com> | 2019-03-01 10:09:23 -0600 |
| commit | f9947333ca99cadebe98b39236e7eaa542d3ee42 (patch) | |
| tree | 8781b8ad821d2ed0e4c42831fd41b492e0338995 /var | |
| parent | c4aba6a2042a2823e55e7cfff0d0846d30b52f6e (diff) | |
| download | spack-f9947333ca99cadebe98b39236e7eaa542d3ee42.tar.gz spack-f9947333ca99cadebe98b39236e7eaa542d3ee42.tar.bz2 spack-f9947333ca99cadebe98b39236e7eaa542d3ee42.tar.xz spack-f9947333ca99cadebe98b39236e7eaa542d3ee42.zip | |
bridger: new package at 2014-12-01 (#10611)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/bridger/package.py | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bridger/package.py b/var/spack/repos/builtin/packages/bridger/package.py new file mode 100644 index 0000000000..4071046478 --- /dev/null +++ b/var/spack/repos/builtin/packages/bridger/package.py @@ -0,0 +1,31 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * +from os import symlink + + +class Bridger(MakefilePackage): + """Bridger : An Efficient De novo Transcriptome Assembler For + RNA-Seq Data""" + + homepage = "https://sourceforge.net/projects/rnaseqassembly/" + url = "https://downloads.sourceforge.net/project/rnaseqassembly/Bridger_r2014-12-01.tar.gz" + + version('2014-12-01', sha256='8fbec8603ea8ad2162cbd0c658e4e0a4af6453bdb53310b4b7e0d112e40b5737') + + depends_on('boost') + depends_on('perl', type='run') + + def install(self, spec, prefix): + # bridger depends very much on perl scripts/etc in the source tree + install_path = join_path(prefix, 'usr/local/bridger') + mkdirp(install_path) + install_tree('.', install_path) + + # symlink the init script to /bin + mkdirp(prefix.bin) + symlink(join_path(install_path, 'Bridger.pl'), + join_path(prefix.bin, 'Bridger.pl')) |