diff options
| author | Todd Gamblin <tgamblin@llnl.gov> | 2015-02-24 10:42:58 -0800 |
|---|---|---|
| committer | Todd Gamblin <tgamblin@llnl.gov> | 2015-02-24 10:42:58 -0800 |
| commit | 8eab69fc0b06994ad063efec4d40c418aef49a10 (patch) | |
| tree | 764ba29462f20fb1196b9fba1dc3374f9bec2c8f /var | |
| parent | fa21acc470d9c32619b3c67dcce54c7b0a69a07a (diff) | |
| parent | ffdb90f39a56e5f0dacefd19ccf85ddd0e7a01c0 (diff) | |
| download | spack-0.8.15.tar.gz spack-0.8.15.tar.bz2 spack-0.8.15.tar.xz spack-0.8.15.zip | |
Merge branch 'develop' for v0.8.15v0.8.15
Diffstat (limited to 'var')
119 files changed, 4115 insertions, 41 deletions
diff --git a/var/spack/packages/ImageMagick/package.py b/var/spack/packages/ImageMagick/package.py index 39c733e0df..753ea80ca6 100644 --- a/var/spack/packages/ImageMagick/package.py +++ b/var/spack/packages/ImageMagick/package.py @@ -3,16 +3,32 @@ from spack import * class Imagemagick(Package): """ImageMagick is a image processing library""" homepage = "http://www.imagemagic.org" - url = "http://www.imagemagick.org/download/ImageMagick-6.8.9-9.tar.gz" - version('6.8.9-9', 'e63fed3e3550851328352c708f800676') + #------------------------------------------------------------------------- + # ImageMagick does not keep around anything but *-10 versions, so + # this URL may change. If you want the bleeding edge, you can + # uncomment it and see if it works but you may need to try to + # fetch a newer version (-6, -7, -8, -9, etc.) or you can stick + # wtih the older, stable, archived -10 versions below. + # + # TODO: would be nice if spack had a way to recommend avoiding a + # TODO: bleeding edge version, but not comment it out. + # ------------------------------------------------------------------------- + # version('6.9.0-6', 'c1bce7396c22995b8bdb56b7797b4a1b', + # url="http://www.imagemagick.org/download/ImageMagick-6.9.0-6.tar.bz2") + + #------------------------------------------------------------------------- + # *-10 versions are archived, so these versions should fetch reliably. + # ------------------------------------------------------------------------- + version('6.8.9-10', 'aa050bf9785e571c956c111377bbf57c', + url="http://sourceforge.net/projects/imagemagick/files/old-sources/6.x/6.8/ImageMagick-6.8.9-10.tar.gz/download") depends_on('libtool') depends_on('jpeg') depends_on('libpng') depends_on('freetype') depends_on('fontconfig') -# depends_on('libtiff') + depends_on('libtiff') def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/packages/Mitos/package.py b/var/spack/packages/Mitos/package.py new file mode 100644 index 0000000000..272360a55c --- /dev/null +++ b/var/spack/packages/Mitos/package.py @@ -0,0 +1,18 @@ +from spack import * + +class Mitos(Package): + """Mitos is a library and a tool for collecting sampled memory + performance data to view with MemAxes""" + + homepage = "https://github.com/scalability-llnl/Mitos" + url = "https://github.com/scalability-llnl/Mitos" + + version('0.7', git='https://github.com/scalability-llnl/Mitos.git', tag='v0.7') + + depends_on('dyninst') + + def install(self, spec, prefix): + with working_dir('spack-build', create=True): + cmake('..', *std_cmake_args) + make() + make("install") diff --git a/var/spack/packages/R/package.py b/var/spack/packages/R/package.py new file mode 100644 index 0000000000..2e6f65a742 --- /dev/null +++ b/var/spack/packages/R/package.py @@ -0,0 +1,33 @@ +from spack import * + +class R(Package): + """R is 'GNU S', a freely available language and environment for + statistical computing and graphics which provides a wide va + riety of statistical and graphical techniques: linear and + nonlinear modelling, statistical tests, time series analysis, + classification, clustering, etc. Please consult the R project + homepage for further information.""" + homepage = "http://www.example.com" + url = "http://cran.cnr.berkeley.edu/src/base/R-3/R-3.1.2.tar.gz" + + version('3.1.2', '3af29ec06704cbd08d4ba8d69250ae74') + + depends_on("readline") + depends_on("ncurses") + depends_on("icu") + depends_on("glib") + depends_on("zlib") + depends_on("libtiff") + depends_on("jpeg") + depends_on("cairo") + depends_on("pango") + depends_on("freetype") + depends_on("tcl") + depends_on("tk") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--enable-R-shlib", + "--enable-BLAS-shlib") + make() + make("install") diff --git a/var/spack/packages/atk/package.py b/var/spack/packages/atk/package.py new file mode 100644 index 0000000000..769805b227 --- /dev/null +++ b/var/spack/packages/atk/package.py @@ -0,0 +1,18 @@ +from spack import * + +class Atk(Package): + """ATK provides the set of accessibility interfaces that are + implemented by other toolkits and applications. Using the ATK + interfaces, accessibility tools have full access to view and + control running applications.""" + homepage = "https://developer.gnome.org/atk/" + url = "http://ftp.gnome.org/pub/gnome/sources/atk/2.14/atk-2.14.0.tar.xz" + + version('2.14.0', 'ecb7ca8469a5650581b1227d78051b8b') + + depends_on("glib") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/bison/package.py b/var/spack/packages/bison/package.py new file mode 100644 index 0000000000..7c526fb958 --- /dev/null +++ b/var/spack/packages/bison/package.py @@ -0,0 +1,17 @@ +from spack import * + +class Bison(Package): + """Bison is a general-purpose parser generator that converts + an annotated context-free grammar into a deterministic LR or + generalized LR (GLR) parser employing LALR(1) parser tables.""" + + homepage = "http://www.gnu.org/software/bison/" + url = "http://ftp.gnu.org/gnu/bison/bison-3.0.tar.gz" + + version('3.0.4', 'a586e11cd4aff49c3ff6d3b6a4c9ccf8') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/boost/package.py b/var/spack/packages/boost/package.py index d3231c3baa..254d1afda1 100644 --- a/var/spack/packages/boost/package.py +++ b/var/spack/packages/boost/package.py @@ -53,7 +53,10 @@ class Boost(Package): bootstrap = Executable('./bootstrap.sh') bootstrap() - b2 = Executable('./b2') + # b2 used to be called bjam, before 1.47 (sigh) + b2name = './b2' if spec.satisfies('@1.47:') else './bjam' + + b2 = Executable(b2name) b2('install', '-j %s' % make_jobs, '--prefix=%s' % prefix) diff --git a/var/spack/packages/bzip2/package.py b/var/spack/packages/bzip2/package.py new file mode 100644 index 0000000000..fbd5869a53 --- /dev/null +++ b/var/spack/packages/bzip2/package.py @@ -0,0 +1,34 @@ +from spack import * +from glob import glob + +class Bzip2(Package): + """bzip2 is a freely available, patent free high-quality data + compressor. It typically compresses files to within 10% to 15% + of the best available techniques (the PPM family of statistical + compressors), whilst being around twice as fast at compression + and six times faster at decompression.""" + homepage = "http://www.bzip.org" + url = "http://www.bzip.org/1.0.6/bzip2-1.0.6.tar.gz" + + version('1.0.6', '00b516f4704d4a7cb50a1d97e6e8e15b') + + def install(self, spec, prefix): + # No configure system -- have to filter the makefile for this package. + filter_file(r'CC=gcc', 'CC=cc', 'Makefile', string=True) + + make('-f', 'Makefile-libbz2_so') + make('clean') + make("install", "PREFIX=%s" % prefix) + + bzip2_exe = join_path(prefix.bin, 'bzip2') + install('bzip2-shared', bzip2_exe) + for libfile in glob('libbz2.so*'): + install(libfile, prefix.lib) + + bunzip2 = join_path(prefix.bin, 'bunzip2') + remove(bunzip2) + symlink(bzip2_exe, bunzip2) + + bzcat = join_path(prefix.bin, 'bzcat') + remove(bzcat) + symlink(bzip2_exe, bzcat) diff --git a/var/spack/packages/cairo/package.py b/var/spack/packages/cairo/package.py new file mode 100644 index 0000000000..e1ac8aaa7d --- /dev/null +++ b/var/spack/packages/cairo/package.py @@ -0,0 +1,19 @@ +from spack import * + +class Cairo(Package): + """Cairo is a 2D graphics library with support for multiple output devices.""" + homepage = "http://cairographics.org" + url = "http://cairographics.org/releases/cairo-1.14.0.tar.xz" + + version('1.14.0', 'fc3a5edeba703f906f2241b394f0cced') + + depends_on("libpng") + depends_on("glib") + depends_on("pixman") + depends_on("fontconfig@2.10.91:") # Require newer version of fontconfig. + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--enable-tee") + make() + make("install") diff --git a/var/spack/packages/clang/package.py b/var/spack/packages/clang/package.py index b0097bd126..4f10385dbd 100644 --- a/var/spack/packages/clang/package.py +++ b/var/spack/packages/clang/package.py @@ -29,11 +29,10 @@ class Clang(Package): Objective C and Objective C++ front-end for the LLVM compiler. """ homepage = "http://clang.llvm.org" - url = "http://llvm.org/releases/3.4.2/cfe-3.4.2.src.tar.gz" + list_url = "http://llvm.org/releases/download.html" depends_on("llvm") - - version('3.4.2', '87945973b7c73038871c5f849a818588') + version('3.4.2', '87945973b7c73038871c5f849a818588', url='http://llvm.org/releases/3.4.2/cfe-3.4.2.src.tar.xz') def install(self, spec, prefix): env['CXXFLAGS'] = self.compiler.cxx11_flag diff --git a/var/spack/packages/cloog/package.py b/var/spack/packages/cloog/package.py new file mode 100644 index 0000000000..814a33c76c --- /dev/null +++ b/var/spack/packages/cloog/package.py @@ -0,0 +1,26 @@ +from spack import * + +class Cloog(Package): + """CLooG is a free software and library to generate code for + scanning Z-polyhedra. That is, it finds a code (e.g. in C, + FORTRAN...) that reaches each integral point of one or more + parameterized polyhedra.""" + + homepage = "http://www.cloog.org" + url = "http://www.bastoul.net/cloog/pages/download/count.php3?url=./cloog-0.18.1.tar.gz" + list_url = "http://www.bastoul.net/cloog/pages/download" + + version('0.18.1', 'e34fca0540d840e5d0f6427e98c92252') + version('0.18.0', 'be78a47bd82523250eb3e91646db5b3d') + version('0.17.0', '0aa3302c81f65ca62c114e5264f8a802') + + depends_on("gmp") + depends_on("isl") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--with-osl=no", + "--with-isl=%s" % spec['isl'].prefix, + "--with-gmp=%s" % spec['gmp'].prefix) + make() + make("install") diff --git a/var/spack/packages/dbus/package.py b/var/spack/packages/dbus/package.py new file mode 100644 index 0000000000..f7f394498c --- /dev/null +++ b/var/spack/packages/dbus/package.py @@ -0,0 +1,29 @@ +from spack import * + +class Dbus(Package): + """D-Bus is a message bus system, a simple way for applications to + talk to one another. D-Bus supplies both a system daemon (for + events such new hardware device printer queue ) and a + per-user-login-session daemon (for general IPC needs among user + applications). Also, the message bus is built on top of a + general one-to-one message passing framework, which can be used + by any two applications to communicate directly (without going + through the message bus daemon).""" + + homepage = "http://dbus.freedesktop.org/" + url = "http://dbus.freedesktop.org/releases/dbus/dbus-1.8.8.tar.gz" + + version('1.9.0', 'ec6895a4d5c0637b01f0d0e7689e2b36') + version('1.8.8', 'b9f4a18ee3faa1e07c04aa1d83239c43') + version('1.8.6', '6a08ba555d340e9dfe2d623b83c0eea8') + version('1.8.4', '4717cb8ab5b80978fcadf2b4f2f72e1b') + version('1.8.2', 'd6f709bbec0a022a1847c7caec9d6068') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") + + # dbus needs a machine id generated after install + dbus_uuidgen = Executable(join_path(prefix.bin, 'dbus-uuidgen')) + dbus_uuidgen('--ensure') diff --git a/var/spack/packages/dri2proto/package.py b/var/spack/packages/dri2proto/package.py new file mode 100644 index 0000000000..11dfa568e2 --- /dev/null +++ b/var/spack/packages/dri2proto/package.py @@ -0,0 +1,14 @@ +from spack import * + +class Dri2proto(Package): + """DRI2 Protocol Headers.""" + homepage = "http://http://cgit.freedesktop.org/xorg/proto/dri2proto/" + url = "http://xorg.freedesktop.org/releases/individual/proto/dri2proto-2.8.tar.gz" + + version('2.8', '19ea18f63d8ae8053c9fa84b60365b77') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/dyninst/package.py b/var/spack/packages/dyninst/package.py index df19ac7bc0..f3d661f9a9 100644 --- a/var/spack/packages/dyninst/package.py +++ b/var/spack/packages/dyninst/package.py @@ -31,13 +31,35 @@ class Dyninst(Package): url = "http://www.dyninst.org/sites/default/files/downloads/dyninst/8.1.2/DyninstAPI-8.1.2.tgz" list_url = "http://www.dyninst.org/downloads/dyninst-8.x" - version('8.1.2', 'bf03b33375afa66fe0efa46ce3f4b17a') - version('8.1.1', '1f8743e3a5662b25ce64a7edf647e77d') +# Doesn't build right with boost@1.55.0 +# version('8.2.1', 'abf60b7faabe7a2e4b54395757be39c7', +# url="http://www.paradyn.org/release8.2/DyninstAPI-8.2.1.tgz") + version('8.1.2', 'bf03b33375afa66fe0efa46ce3f4b17a', + url="http://www.paradyn.org/release8.1.2/DyninstAPI-8.1.2.tgz") + version('8.1.1', 'd1a04e995b7aa70960cd1d1fac8bd6ac', + url="http://www.paradyn.org/release8.1/DyninstAPI-8.1.1.tgz") depends_on("libelf") depends_on("libdwarf") depends_on("boost@1.42:") + # new version uses cmake + def install(self, spec, prefix): + libelf = spec['libelf'].prefix + libdwarf = spec['libdwarf'].prefix + + with working_dir('spack-build', create=True): + cmake('..', + '-DLIBELF_INCLUDE_DIR=%s' % join_path(libelf.include, 'libelf'), + '-DLIBELF_LIBRARIES=%s' % join_path(libelf.lib, 'libelf.so'), + '-DLIBDWARF_INCLUDE_DIR=%s' % libdwarf.include, + '-DLIBDWARF_LIBRARIES=%s' % join_path(libdwarf.lib, 'libdwarf.so'), + *std_cmake_args) + make() + make("install") + + + @when('@:8.1') def install(self, spec, prefix): configure("--prefix=" + prefix) make() diff --git a/var/spack/packages/extrae/package.py b/var/spack/packages/extrae/package.py index 3b842bc1ec..3ad4cbaf86 100644 --- a/var/spack/packages/extrae/package.py +++ b/var/spack/packages/extrae/package.py @@ -1,5 +1,8 @@ from spack import * +# typical working line with extrae 3.0.1 +# ./configure --prefix=/usr/local --with-mpi=/usr/lib64/mpi/gcc/openmpi --with-unwind=/usr/local --with-papi=/usr --with-dwarf=/usr --with-elf=/usr --with-dyninst=/usr --with-binutils=/usr --with-xml-prefix=/usr --enable-openmp --enable-nanos --enable-pthread --disable-parallel-merge LDFLAGS=-pthread + class Extrae(Package): """Extrae is the package devoted to generate tracefiles which can be analyzed later by Paraver. Extrae is a tool that uses @@ -10,11 +13,10 @@ class Extrae(Package): programming models either alone or in conjunction with MPI : OpenMP, CUDA, OpenCL, pthread, OmpSs""" homepage = "http://www.bsc.es/computer-sciences/extrae" - url = "http://www.bsc.es/ssl/apps/performanceTools/files/extrae-2.5.1.tar.bz2" - version('2.5.1', '422376b9c68243bd36a8a73fa62de106') + url = "http://www.bsc.es/ssl/apps/performanceTools/files/extrae-3.0.1.tar.bz2" + version('3.0.1', 'a6a8ca96cd877723cd8cc5df6bdb922b') - #depends_on("mpi") - depends_on("openmpi@:1.6") + depends_on("mpi") depends_on("dyninst") depends_on("libunwind") depends_on("boost") @@ -24,14 +26,20 @@ class Extrae(Package): def install(self, spec, prefix): if 'openmpi' in spec: mpi = spec['openmpi'] - #if spec.satisfies('@2.5.1') and spec.satisfies('^openmpi@1.6.5'): - # tty.error("Some headers conflict when using OpenMPI 1.6.5. Please use 1.6 instead.") elif 'mpich' in spec: mpi = spec['mpich'] elif 'mvapich2' in spec: mpi = spec['mvapich2'] - configure("--prefix=%s" % prefix, "--with-mpi=%s" % mpi.prefix, "--with-unwind=%s" % spec['libunwind'].prefix, "--with-dyninst=%s" % spec['dyninst'].prefix, "--with-boost=%s" % spec['boost'].prefix, "--with-dwarf=%s" % spec['libdwarf'].prefix, "--with-papi=%s" % spec['papi'].prefix, "--with-dyninst-headers=%s" % spec['dyninst'].prefix.include, "--with-dyninst-libs=%s" % spec['dyninst'].prefix.lib) + configure("--prefix=%s" % prefix, + "--with-mpi=%s" % mpi.prefix, + "--with-unwind=%s" % spec['libunwind'].prefix, + "--with-dyninst=%s" % spec['dyninst'].prefix, + "--with-boost=%s" % spec['boost'].prefix, + "--with-dwarf=%s" % spec['libdwarf'].prefix, + "--with-papi=%s" % spec['papi'].prefix, + "--with-dyninst-headers=%s" % spec['dyninst'].prefix.include, + "--with-dyninst-libs=%s" % spec['dyninst'].prefix.lib) make() make("install", parallel=False) diff --git a/var/spack/packages/flex/package.py b/var/spack/packages/flex/package.py new file mode 100644 index 0000000000..b065904912 --- /dev/null +++ b/var/spack/packages/flex/package.py @@ -0,0 +1,15 @@ +from spack import * + +class Flex(Package): + """Flex is a tool for generating scanners.""" + + homepage = "http://flex.sourceforge.net/" + url = "http://download.sourceforge.net/flex/flex-2.5.39.tar.gz" + + version('2.5.39', 'e133e9ead8ec0a58d81166b461244fde') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/gasnet/package.py b/var/spack/packages/gasnet/package.py new file mode 100644 index 0000000000..705961d1de --- /dev/null +++ b/var/spack/packages/gasnet/package.py @@ -0,0 +1,35 @@ +from spack import * + +class Gasnet(Package): + """GASNet is a language-independent, low-level networking layer + that provides network-independent, high-performance communication + primitives tailored for implementing parallel global address space + SPMD languages and libraries such as UPC, Co-Array Fortran, SHMEM, + Cray Chapel, and Titanium. + """ + homepage = "http://gasnet.lbl.gov" + url = "http://gasnet.lbl.gov/GASNet-1.24.0.tar.gz" + + version('1.24.0', 'c8afdf48381e8b5a7340bdb32ca0f41a') + + + def install(self, spec, prefix): + # TODO: don't use paths with @ in them. + change_sed_delimiter('@', ';', 'configure') + + configure("--prefix=%s" % prefix, + # TODO: factor IB suport out into architecture description. + "--enable-ibv", + "--enable-udp", + "--disable-mpi", + "--enable-par", + "--enable-mpi-compat", + "--enable-segment-fast", + "--disable-aligned-segments", + # TODO: make an option so that Legion can request builds with/without this. + # See the Legion webpage for details on when to/not to use. + "--disable-pshm", + "--with-segment-mmap-max=64MB") + + make() + make("install") diff --git a/var/spack/packages/gcc/package.py b/var/spack/packages/gcc/package.py new file mode 100644 index 0000000000..3da6c25d47 --- /dev/null +++ b/var/spack/packages/gcc/package.py @@ -0,0 +1,107 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +from contextlib import closing +from glob import glob + +class Gcc(Package): + """The GNU Compiler Collection includes front ends for C, C++, + Objective-C, Fortran, and Java.""" + homepage = "https://gcc.gnu.org" + + url = "http://open-source-box.org/gcc/gcc-4.9.2/gcc-4.9.2.tar.bz2" + list_url = 'http://open-source-box.org/gcc/' + list_depth = 2 + + version('4.9.2', '4df8ee253b7f3863ad0b86359cd39c43') + version('4.9.1', 'fddf71348546af523353bd43d34919c1') + version('4.8.4', '5a84a30839b2aca22a2d723de2a626ec') + version('4.7.4', '4c696da46297de6ae77a82797d2abe28') + version('4.6.4', 'b407a3d1480c11667f293bfb1f17d1a4') + version('4.5.4', '27e459c2566b8209ab064570e1b378f7') + + depends_on("mpfr") + depends_on("gmp") + depends_on("mpc") # when @4.5: + depends_on("libelf") + + # Save these until we can do optional deps. + #depends_on("isl") + #depends_on("ppl") + #depends_on("cloog") + + def install(self, spec, prefix): + # libjava/configure needs a minor fix to install into spack paths. + filter_file(r"'@.*@'", "'@[[:alnum:]]*@'", 'libjava/configure', string=True) + + enabled_languages = set(('c', 'c++', 'fortran', 'java', 'objc')) + if spec.satisfies("@4.7.1:"): + enabled_languages.add('go') + + # Rest of install is straightforward. + configure("--prefix=%s" % prefix, + "--libdir=%s/lib64" % prefix, + "--disable-multilib", + "--enable-languages=" + ','.join(enabled_languages), + "--with-mpc=%s" % spec['mpc'].prefix, + "--with-mpfr=%s" % spec['mpfr'].prefix, + "--with-gmp=%s" % spec['gmp'].prefix, + "--with-libelf=%s" % spec['libelf'].prefix, + "--with-stage1-ldflags=%s" % self.rpath_args, + "--with-boot-ldflags=%s" % self.rpath_args, + "--enable-lto", + "--with-quad") + make() + make("install") + + self.write_rpath_specs() + + + @property + def spec_dir(self): + # e.g. lib64/gcc/x86_64-unknown-linux-gnu/4.9.2 + spec_dir = glob("%s/lib64/gcc/*/*" % self.prefix) + return spec_dir[0] if spec_dir else None + + + def write_rpath_specs(self): + """Generate a spec file so the linker adds a rpath to the libs + the compiler used to build the executable.""" + if not self.spec_dir: + tty.warn("Could not install specs for %s." % self.spec.format('$_$@')) + return + + gcc = Executable(join_path(self.prefix.bin, 'gcc')) + lines = gcc('-dumpspecs', return_output=True).split("\n") + for i, line in enumerate(lines): + if line.startswith("*link:"): + specs_file = join_path(self.spec_dir, 'specs') + with closing(open(specs_file, 'w')) as out: + out.write(lines[i] + "\n") + out.write("-rpath %s/lib:%s/lib64 \\\n" + % (self.prefix, self.prefix)) + out.write(lines[i+1] + "\n") + set_install_permissions(specs_file) diff --git a/var/spack/packages/gdk-pixbuf/package.py b/var/spack/packages/gdk-pixbuf/package.py new file mode 100644 index 0000000000..14a5569984 --- /dev/null +++ b/var/spack/packages/gdk-pixbuf/package.py @@ -0,0 +1,22 @@ +from spack import * + +class GdkPixbuf(Package): + """The Gdk Pixbuf is a toolkit for image loading and pixel buffer + manipulation. It is used by GTK+ 2 and GTK+ 3 to load and + manipulate images. In the past it was distributed as part of + GTK+ 2 but it was split off into a separate package in + preparation for the change to GTK+ 3.""" + homepage = "https://developer.gnome.org/gdk-pixbuf/" + url = "http://ftp.gnome.org/pub/gnome/sources/gdk-pixbuf/2.31/gdk-pixbuf-2.31.1.tar.xz" + + version('2.31.2', '6be6bbc4f356d4b79ab4226860ab8523') + + depends_on("glib") + depends_on("jpeg") + depends_on("libpng") + depends_on("libtiff") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/geos/package.py b/var/spack/packages/geos/package.py new file mode 100644 index 0000000000..4a2657e32f --- /dev/null +++ b/var/spack/packages/geos/package.py @@ -0,0 +1,31 @@ +from spack import * + +class Geos(Package): + """GEOS (Geometry Engine - Open Source) is a C++ port of the Java + Topology Suite (JTS). As such, it aims to contain the complete + functionality of JTS in C++. This includes all the OpenGIS + Simple Features for SQL spatial predicate functions and spatial + operators, as well as specific JTS enhanced topology functions.""" + + homepage = "http://trac.osgeo.org/geos/" + url = "http://download.osgeo.org/geos/geos-3.4.2.tar.bz2" + + version('3.4.2', 'fc5df2d926eb7e67f988a43a92683bae') + version('3.4.1', '4c930dec44c45c49cd71f3e0931ded7e') + version('3.4.0', 'e41318fc76b5dc764a69d43ac6b18488') + version('3.3.9', '4794c20f07721d5011c93efc6ccb8e4e') + version('3.3.8', '75be476d0831a2d14958fed76ca266de') + version('3.3.7', '95ab996d22672b067d92c7dee2170460') + version('3.3.6', '6fadfb941541875f4976f75fb0bbc800') + version('3.3.5', '2ba61afb7fe2c5ddf642d82d7b16e75b') + version('3.3.4', '1bb9f14d57ef06ffa41cb1d67acb55a1') + version('3.3.3', '8454e653d7ecca475153cc88fd1daa26') + + extends('python') + depends_on('swig') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--enable-python") + make() + make("install") diff --git a/var/spack/packages/git/package.py b/var/spack/packages/git/package.py new file mode 100644 index 0000000000..0f1a3ba05b --- /dev/null +++ b/var/spack/packages/git/package.py @@ -0,0 +1,27 @@ +from spack import * + +class Git(Package): + """Git is a free and open source distributed version control + system designed to handle everything from small to very large + projects with speed and efficiency.""" + homepage = "http://git-scm.com" + url = "https://www.kernel.org/pub/software/scm/git/git-2.2.1.tar.xz" + + version('2.2.1', '43e01f9d96ba8c11611e0eef0d9f9f28') + + # Use system openssl. + # depends_on("openssl") + + # Use system perl for now. + # depends_on("perl") + # depends_on("pcre") + + depends_on("zlib") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--without-pcre", + "--without-python") + + make() + make("install") diff --git a/var/spack/packages/glib/package.py b/var/spack/packages/glib/package.py new file mode 100644 index 0000000000..178f0b9df5 --- /dev/null +++ b/var/spack/packages/glib/package.py @@ -0,0 +1,18 @@ +from spack import * + +class Glib(Package): + """The GLib package contains a low-level libraries useful for + providing data structure handling for C, portability wrappers + and interfaces for such runtime functionality as an event loop, + threads, dynamic loading and an object system.""" + homepage = "https://developer.gnome.org/glib/" + url = "http://ftp.gnome.org/pub/gnome/sources/glib/2.42/glib-2.42.1.tar.xz" + + version('2.42.1', '89c4119e50e767d3532158605ee9121a') + + depends_on("libffi") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/gmp/package.py b/var/spack/packages/gmp/package.py new file mode 100644 index 0000000000..d6af821b34 --- /dev/null +++ b/var/spack/packages/gmp/package.py @@ -0,0 +1,40 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +class Gmp(Package): + """GMP is a free library for arbitrary precision arithmetic, + operating on signed integers, rational numbers, and + floating-point numbers.""" + homepage = "https://gmplib.org" + url = "https://gmplib.org/download/gmp/gmp-6.0.0a.tar.bz2" + + version('6.0.0a', 'b7ff2d88cae7f8085bd5006096eed470') + version('6.0.0' , '6ef5869ae735db9995619135bd856b84') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/gnutls/package.py b/var/spack/packages/gnutls/package.py new file mode 100644 index 0000000000..cf57a24a6d --- /dev/null +++ b/var/spack/packages/gnutls/package.py @@ -0,0 +1,22 @@ +from spack import * + +class Gnutls(Package): + """GnuTLS is a secure communications library implementing the SSL, + TLS and DTLS protocols and technologies around them. It + provides a simple C language application programming interface + (API) to access the secure communications protocols as well as + APIs to parse and write X.509, PKCS #12, OpenPGP and other + required structures. It is aimed to be portable and efficient + with focus on security and interoperability.""" + + homepage = "http://www.gnutls.org" + url = "ftp://ftp.gnutls.org/gcrypt/gnutls/v3.3/gnutls-3.3.9.tar.xz" + + version('3.3.9', 'ff61b77e39d09f1140ab5a9cf52c58b6') + + depends_on("nettle") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/gperf/package.py b/var/spack/packages/gperf/package.py new file mode 100644 index 0000000000..32551b67b4 --- /dev/null +++ b/var/spack/packages/gperf/package.py @@ -0,0 +1,19 @@ +from spack import * + +class Gperf(Package): + """GNU gperf is a perfect hash function generator. For a given + list of strings, it produces a hash function and hash table, in + form of C or C++ code, for looking up a value depending on the + input string. The hash function is perfect, which means that the + hash table has no collisions, and the hash table lookup needs a + single string comparison only.""" + + homepage = "https://www.gnu.org/software/gperf/" + url = "http://ftp.gnu.org/pub/gnu/gperf/gperf-3.0.4.tar.gz" + + version('3.0.4', 'c1f1db32fb6598d6a93e6e88796a8632') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/gperftools/package.py b/var/spack/packages/gperftools/package.py new file mode 100644 index 0000000000..8900462324 --- /dev/null +++ b/var/spack/packages/gperftools/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +class Gperftools(Package): + """Google's fast malloc/free implementation, especially for multi-threaded applications. + Contains tcmalloc, heap-checker, heap-profiler, and cpu-profiler.""" + homepage = "https://code.google.com/p/gperftools" + url = "https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz" + + version('2.3', 'f54dd119f0e46ac1f13264f8d97adf90', url="https://googledrive.com/host/0B6NtGsLhIcf7MWxMMF9JdTN3UVk/gperftools-2.3.tar.gz") + + def install(self, spec, prefix): + configure("--prefix=" + prefix) + make() + make("install") diff --git a/var/spack/packages/gtkplus/package.py b/var/spack/packages/gtkplus/package.py new file mode 100644 index 0000000000..0ebc7100de --- /dev/null +++ b/var/spack/packages/gtkplus/package.py @@ -0,0 +1,22 @@ +from spack import * + +class Gtkplus(Package): + """The GTK+ 2 package contains libraries used for creating graphical user interfaces for applications.""" + homepage = "http://www.gtk.org" + + version('2.24.25', '612350704dd3aacb95355a4981930c6f', + url="http://ftp.gnome.org/pub/gnome/sources/gtk+/2.24/gtk+-2.24.25.tar.xz") + + depends_on("atk") + depends_on("gdk-pixbuf") + depends_on("pango") + + def patch(self): + # remove disable deprecated flag. + filter_file(r'CFLAGS="-DGDK_PIXBUF_DISABLE_DEPRECATED $CFLAGS"', + '', 'configure', string=True) + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/harfbuzz/package.py b/var/spack/packages/harfbuzz/package.py new file mode 100644 index 0000000000..ed7c42a909 --- /dev/null +++ b/var/spack/packages/harfbuzz/package.py @@ -0,0 +1,20 @@ +from spack import * + +class Harfbuzz(Package): + """The Harfbuzz package contains an OpenType text shaping engine.""" + homepage = "http://www.freedesktop.org/wiki/Software/HarfBuzz/" + url = "http://www.freedesktop.org/software/harfbuzz/release/harfbuzz-0.9.37.tar.bz2" + + version('0.9.37', 'bfe733250e34629a188d82e3b971bc1e') + + depends_on("glib") + depends_on("icu") + depends_on("freetype") + + def patch(self): + change_sed_delimiter('@', ';', 'src/Makefile.in') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/hdf5/package.py b/var/spack/packages/hdf5/package.py index 615c2a7fe4..992dd8ec70 100644 --- a/var/spack/packages/hdf5/package.py +++ b/var/spack/packages/hdf5/package.py @@ -18,12 +18,14 @@ class Hdf5(Package): # TODO: currently hard-coded to use OpenMPI def install(self, spec, prefix): + configure( "--prefix=%s" % prefix, "--with-zlib=%s" % spec['zlib'].prefix, "--enable-parallel", - "CC=%s" % spec['openmpi'].prefix.bin + "/mpicc", - "CXX=%s" % spec['openmpi'].prefix.bin + "/mpic++") + "--enable-shared", + "CC=%s" % spec['mpich'].prefix.bin + "/mpicc", + "CXX=%s" % spec['mpich'].prefix.bin + "/mpic++") make() make("install") diff --git a/var/spack/packages/icu/package.py b/var/spack/packages/icu/package.py new file mode 100644 index 0000000000..f256ec5712 --- /dev/null +++ b/var/spack/packages/icu/package.py @@ -0,0 +1,25 @@ +from spack import * + +class Icu(Package): + """The International Components for Unicode (ICU) package is a + mature, widely used set of C/C++ libraries providing Unicode and + Globalization support for software applications. ICU is widely + portable and gives applications the same results on all + platforms.""" + # FIXME: add a proper url for your package's homepage here. + homepage = "http://www.example.com" + url = "http://download.icu-project.org/files/icu4c/54.1/icu4c-54_1-src.tgz" + + version('54.1', 'e844caed8f2ca24c088505b0d6271bc0') + + + def url_for_version(self, version): + return "http://download.icu-project.org/files/icu4c/%s/icu4c-%s-src.tgz" % ( + version, str(version).replace('.', '_')) + + + def install(self, spec, prefix): + with working_dir("source"): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/icu4c/package.py b/var/spack/packages/icu4c/package.py new file mode 100644 index 0000000000..55b44463b2 --- /dev/null +++ b/var/spack/packages/icu4c/package.py @@ -0,0 +1,17 @@ +from spack import * + +class Icu4c(Package): + """ICU is a mature, widely used set of C/C++ and Java libraries + providing Unicode and Globalization support for software applications.""" + + homepage = "http://site.icu-project.org/" + url = "http://downloads.sourceforge.net/project/icu/ICU4C/54.1/icu4c-54_1-src.tgz" + + version('54_1', 'e844caed8f2ca24c088505b0d6271bc0') + + def install(self, spec, prefix): + cd("source") + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/isl/package.py b/var/spack/packages/isl/package.py new file mode 100644 index 0000000000..836ef3ea40 --- /dev/null +++ b/var/spack/packages/isl/package.py @@ -0,0 +1,17 @@ +from spack import * + +class Isl(Package): + """isl is a thread-safe C library for manipulating sets and + relations of integer points bounded by affine constraints.""" + homepage = "http://isl.gforge.inria.fr" + url = "http://isl.gforge.inria.fr/isl-0.14.tar.bz2" + + version('0.14', 'acd347243fca5609e3df37dba47fd0bb') + + depends_on("gmp") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--with-gmp-prefix=%s" % spec['gmp'].prefix) + make() + make("install") diff --git a/var/spack/packages/jdk/package.py b/var/spack/packages/jdk/package.py new file mode 100644 index 0000000000..8f8076dd14 --- /dev/null +++ b/var/spack/packages/jdk/package.py @@ -0,0 +1,46 @@ +#------------------------------------------------------------------------------ +# Author: Justin Too <too1@llnl.gov> +#------------------------------------------------------------------------------ +import distutils +from distutils import dir_util +from subprocess import call + +import spack +from spack import * +import llnl.util.tty as tty + +class Jdk(Package): + """The Java Development Kit (JDK) released by Oracle Corporation + in the form of a binary product aimed at Java developers.""" + homepage = "http://www.oracle.com/technetwork/java/javase/downloads/index.html" + + version('8u25-linux-x64', 'e145c03a7edc845215092786bcfba77e', + url="http://download.oracle.com/otn-pub/java/jdk/8u25-b17/jdk-8u25-linux-x64.tar.gz") + + # Oracle requires that you accept their License Agreement in order + # to access the Java packages in download.oracle.com. In order to + # automate this process, we need to utilize these additional curl + # commandline options. + # + # See http://stackoverflow.com/questions/10268583/how-to-automate-download-and-installation-of-java-jdk-on-linux + curl_options=[ + '-j', # junk cookies + '-H', # specify required License Agreement cookie + 'Cookie: oraclelicense=accept-securebackup-cookie'] + + def do_fetch(self): + # Add our custom curl commandline options + tty.msg( + "[Jdk] Adding required commandline options to curl " + + "before performing fetch: %s" % + (self.curl_options)) + + for option in self.curl_options: + spack.curl.add_default_arg(option) + + # Now perform the actual fetch + super(Jdk, self).do_fetch() + + + def install(self, spec, prefix): + distutils.dir_util.copy_tree(".", prefix) diff --git a/var/spack/packages/jpeg/package.py b/var/spack/packages/jpeg/package.py index b34fd5cb2d..87820467db 100644 --- a/var/spack/packages/jpeg/package.py +++ b/var/spack/packages/jpeg/package.py @@ -5,7 +5,7 @@ class Jpeg(Package): homepage = "http://www.ijg.org" url = "http://www.ijg.org/files/jpegsrc.v9a.tar.gz" - version('9', 'b397211ddfd506b92cd5e02a22ac924d') + version('9a', '3353992aecaee1805ef4109aadd433e7') def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/packages/lcms/package.py b/var/spack/packages/lcms/package.py new file mode 100644 index 0000000000..a53c2f997a --- /dev/null +++ b/var/spack/packages/lcms/package.py @@ -0,0 +1,19 @@ +from spack import * + +class Lcms(Package): + """Little cms is a color management library. Implements fast + transforms between ICC profiles. It is focused on speed, and is + portable across several platforms (MIT license).""" + homepage = "http://www.littlecms.com" + url = "http://downloads.sourceforge.net/project/lcms/lcms/2.6/lcms2-2.6.tar.gz" + + version('2.6', 'f4c08d38ceade4a664ebff7228910a33') + + depends_on("jpeg") + depends_on("libtiff") + depends_on("zlib") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libdrm/package.py b/var/spack/packages/libdrm/package.py new file mode 100644 index 0000000000..00736b7811 --- /dev/null +++ b/var/spack/packages/libdrm/package.py @@ -0,0 +1,18 @@ +from spack import * + +class Libdrm(Package): + """A userspace library for accessing the DRM, direct + rendering manager, on Linux, BSD and other operating + systems that support the ioctl interface.""" + + homepage = "http://dri.freedesktop.org/libdrm/" # no real website... + url = "http://dri.freedesktop.org/libdrm/libdrm-2.4.59.tar.gz" + + version('2.4.59', '105ac7af1afcd742d402ca7b4eb168b6') + version('2.4.33', '86e4e3debe7087d5404461e0032231c8') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/libdwarf/package.py b/var/spack/packages/libdwarf/package.py index c4d71ebc01..099a974e93 100644 --- a/var/spack/packages/libdwarf/package.py +++ b/var/spack/packages/libdwarf/package.py @@ -53,13 +53,6 @@ class Libdwarf(Package): parallel = False - def clean(self): - for dir in dwarf_dirs: - with working_dir(dir): - if os.path.exists('Makefile'): - make('clean') - - def install(self, spec, prefix): # dwarf build does not set arguments for ar properly make.add_default_arg('ARFLAGS=rcs') diff --git a/var/spack/packages/libffi/package.py b/var/spack/packages/libffi/package.py new file mode 100644 index 0000000000..2c1c4eed4d --- /dev/null +++ b/var/spack/packages/libffi/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Libffi(Package): + """The libffi library provides a portable, high level programming + interface to various calling conventions. This allows a programmer + to call any function specified by a call interface description at + run time.""" + homepage = "https://sourceware.org/libffi/" + url = "ftp://sourceware.org/pub/libffi/libffi-3.1.tar.gz" + + version('3.1', 'f5898b29bbfd70502831a212d9249d10') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libgcrypt/package.py b/var/spack/packages/libgcrypt/package.py new file mode 100644 index 0000000000..1d0a57f317 --- /dev/null +++ b/var/spack/packages/libgcrypt/package.py @@ -0,0 +1,19 @@ +from spack import * + +class Libgcrypt(Package): + """Libgcrypt is a general purpose cryptographic library based on + the code from GnuPG. It provides functions for all cryptographic + building blocks: symmetric ciphers, hash algorithms, MACs, public + key algorithms, large integer functions, random numbers and a lot + of supporting functions. """ + homepage = "http://www.gnu.org/software/libgcrypt/" + url = "ftp://ftp.gnupg.org/gcrypt/libgcrypt/libgcrypt-1.6.2.tar.bz2" + + version('1.6.2', 'b54395a93cb1e57619943c082da09d5f') + + depends_on("libgpg-error") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libgpg-error/package.py b/var/spack/packages/libgpg-error/package.py new file mode 100644 index 0000000000..6c1d1a10a7 --- /dev/null +++ b/var/spack/packages/libgpg-error/package.py @@ -0,0 +1,17 @@ +from spack import * + +class LibgpgError(Package): + """Libgpg-error is a small library that defines common error + values for all GnuPG components. Among these are GPG, GPGSM, + GPGME, GPG-Agent, libgcrypt, Libksba, DirMngr, Pinentry, + SmartCard Daemon and possibly more in the future. """ + + homepage = "https://www.gnupg.org/related_software/libgpg-error" + url = "ftp://ftp.gnupg.org/gcrypt/libgpg-error/libgpg-error-1.18.tar.bz2" + + version('1.18', '12312802d2065774b787cbfc22cc04e9') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libjpeg-turbo/package.py b/var/spack/packages/libjpeg-turbo/package.py new file mode 100644 index 0000000000..07ee183947 --- /dev/null +++ b/var/spack/packages/libjpeg-turbo/package.py @@ -0,0 +1,20 @@ +from spack import * + +class LibjpegTurbo(Package): + """libjpeg-turbo is a fork of the original IJG libjpeg which uses + SIMD to accelerate baseline JPEG compression and + decompression. libjpeg is a library that implements JPEG image + encoding, decoding and transcoding.""" + homepage = "http://libjpeg-turbo.virtualgl.org" + url = "http://downloads.sourceforge.net/libjpeg-turbo/libjpeg-turbo-1.3.1.tar.gz" + + version('1.3.1', '2c3a68129dac443a72815ff5bb374b05') + + # Can use either of these. + depends_on("yasm") + depends_on("nasm") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libmng/package.py b/var/spack/packages/libmng/package.py new file mode 100644 index 0000000000..e5336ea2c2 --- /dev/null +++ b/var/spack/packages/libmng/package.py @@ -0,0 +1,23 @@ +from spack import * + +class Libmng(Package): + """libmng -THE reference library for reading, displaying, writing + and examining Multiple-Image Network Graphics. MNG is the animation + extension to the popular PNG image-format.""" + homepage = "http://sourceforge.net/projects/libmng/" + url = "http://downloads.sourceforge.net/project/libmng/libmng-devel/2.0.2/libmng-2.0.2.tar.gz" + + version('2.0.2', '1ffefaed4aac98475ee6267422cbca55') + + depends_on("jpeg") + depends_on("zlib") + depends_on("lcms") + + def patch(self): + # jpeg requires stdio to beincluded before its headrs. + filter_file(r'^(\#include \<jpeglib\.h\>)', '#include<stdio.h>\n\\1', 'libmng_types.h') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/libmonitor/package.py b/var/spack/packages/libmonitor/package.py index ed619e4cce..3b95b86ddf 100644 --- a/var/spack/packages/libmonitor/package.py +++ b/var/spack/packages/libmonitor/package.py @@ -28,7 +28,7 @@ class Libmonitor(Package): """Libmonitor is a library for process and thread control.""" homepage = "http://hpctoolkit.org" - version('20130218', svn='https://outreach.scidac.gov/svn/libmonitor/trunk', revision=146) + version('20130218', svn='http://libmonitor.googlecode.com/svn/trunk/', revision=146) def install(self, spec, prefix): configure("--prefix=" + prefix) diff --git a/var/spack/packages/libpng/package.py b/var/spack/packages/libpng/package.py index a6d9bf0b46..e02b08663e 100644 --- a/var/spack/packages/libpng/package.py +++ b/var/spack/packages/libpng/package.py @@ -3,12 +3,13 @@ from spack import * class Libpng(Package): """libpng graphics file format""" homepage = "http://www.libpng.org/pub/png/libpng.html" - url = "http://sourceforge.net/projects/libpng/files/libpng16/1.6.14/libpng-1.6.14.tar.gz/download" + url = "http://download.sourceforge.net/libpng/libpng-1.6.16.tar.gz" + version('1.6.16', '1a4ad377919ab15b54f6cb6a3ae2622d') + version('1.6.15', '829a256f3de9307731d4f52dc071916d') version('1.6.14', '2101b3de1d5f348925990f9aa8405660') def install(self, spec, prefix): configure("--prefix=%s" % prefix) - make() make("install") diff --git a/var/spack/packages/libtiff/package.py b/var/spack/packages/libtiff/package.py index ec54cf7adf..63c6704cb8 100644 --- a/var/spack/packages/libtiff/package.py +++ b/var/spack/packages/libtiff/package.py @@ -8,6 +8,8 @@ class Libtiff(Package): version('4.0.3', '051c1068e6a0627f461948c365290410') depends_on('jpeg') + depends_on('zlib') + depends_on('xz') def install(self, spec, prefix): configure("--prefix=%s" % prefix) diff --git a/var/spack/packages/libxcb/package.py b/var/spack/packages/libxcb/package.py new file mode 100644 index 0000000000..521cd0d475 --- /dev/null +++ b/var/spack/packages/libxcb/package.py @@ -0,0 +1,21 @@ +from spack import * + +class Libxcb(Package): + """The X protocol C-language Binding (XCB) is a replacement + for Xlib featuring a small footprint, latency hiding, direct + access to the protocol, improved threading support, and + extensibility.""" + + homepage = "http://xcb.freedesktop.org/" + url = "http://xcb.freedesktop.org/dist/libxcb-1.11.tar.gz" + + version('1.11', '1698dd837d7e6e94d029dbe8b3a82deb') + + depends_on("python") + depends_on("xcb-proto") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/libxml2/package.py b/var/spack/packages/libxml2/package.py new file mode 100644 index 0000000000..72199d8def --- /dev/null +++ b/var/spack/packages/libxml2/package.py @@ -0,0 +1,19 @@ +from spack import * + +class Libxml2(Package): + """Libxml2 is the XML C parser and toolkit developed for the Gnome + project (but usable outside of the Gnome platform), it is free + software available under the MIT License.""" + homepage = "http://xmlsoft.org" + url = "http://xmlsoft.org/sources/libxml2-2.9.2.tar.gz" + + version('2.9.2', '9e6a9aca9d155737868b3dc5fd82f788') + + depends_on('zlib') + depends_on('xz') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--without-python") + make() + make("install") diff --git a/var/spack/packages/libxshmfence/package.py b/var/spack/packages/libxshmfence/package.py new file mode 100644 index 0000000000..3aa2448b46 --- /dev/null +++ b/var/spack/packages/libxshmfence/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Libxshmfence(Package): + """This is a tiny library that exposes a event API on top of Linux + futexes.""" + + homepage = "http://keithp.com/blogs/dri3_extension/" # not really... + url = "http://xorg.freedesktop.org/archive/individual/lib/libxshmfence-1.2.tar.gz" + + version('1.2', 'f0b30c0fc568b22ec524859ee28556f1') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/libxslt/package.py b/var/spack/packages/libxslt/package.py new file mode 100644 index 0000000000..f97332d020 --- /dev/null +++ b/var/spack/packages/libxslt/package.py @@ -0,0 +1,24 @@ +from spack import * + +class Libxslt(Package): + """Libxslt is the XSLT C library developed for the GNOME + project. XSLT itself is a an XML language to define + transformation for XML. Libxslt is based on libxml2 the XML C + library developed for the GNOME project. It also implements + most of the EXSLT set of processor-portable extensions + functions and some of Saxon's evaluate and expressions + extensions.""" + homepage = "http://www.xmlsoft.org/XSLT/index.html" + url = "http://xmlsoft.org/sources/libxslt-1.1.28.tar.gz" + + version('1.1.28', '9667bf6f9310b957254fdcf6596600b7') + + depends_on("libxml2") + depends_on("xz") + depends_on("zlib") + depends_on("libgcrypt") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/llvm/package.py b/var/spack/packages/llvm/package.py index c7a10df55a..9d2be690bb 100644 --- a/var/spack/packages/llvm/package.py +++ b/var/spack/packages/llvm/package.py @@ -32,9 +32,13 @@ class Llvm(Package): it is the full name of the project. """ homepage = "http://llvm.org/" - url = "http://llvm.org/releases/3.4.2/llvm-3.4.2.src.tar.gz" + list_url = "http://llvm.org/releases/download.html" - version('3.4.2', 'a20669f75967440de949ac3b1bad439c') + version('3.5.1', '2d3d8004f38852aa679e5945b8ce0b14', url='http://llvm.org/releases/3.5.1/llvm-3.5.1.src.tar.xz') + version('3.4.2', 'a20669f75967440de949ac3b1bad439c', url='http://llvm.org/releases/3.4.2/llvm-3.4.2.src.tar.gz') + version('3.0', 'a8e5f5f1c1adebae7b4a654c376a6005', url='http://llvm.org/releases/3.0/llvm-3.0.tar.gz') + version('2.9', '793138412d2af2c7c7f54615f8943771', url='http://llvm.org/releases/2.9/llvm-2.9.tgz') + version('2.8', '220d361b4d17051ff4bb21c64abe05ba', url='http://llvm.org/releases/2.8/llvm-2.8.tgz') def install(self, spec, prefix): env['CXXFLAGS'] = self.compiler.cxx11_flag diff --git a/var/spack/packages/memaxes/package.py b/var/spack/packages/memaxes/package.py new file mode 100644 index 0000000000..afa62009a6 --- /dev/null +++ b/var/spack/packages/memaxes/package.py @@ -0,0 +1,20 @@ +from spack import * + +class Memaxes(Package): + """MemAxes is a visualizer for sampled memory trace data.""" + + homepage = "https://github.com/scalability-llnl/MemAxes" + + version('0.5', 'b0f561d48aa7301e028d074bc4b5751b', + url='https://github.com/scalability-llnl/MemAxes/archive/v0.5.tar.gz') + + depends_on("cmake@2.8.9:") + depends_on("qt@5:") + depends_on("vtk") + + def install(self, spec, prefix): + with working_dir('spack-build', create=True): + cmake('..', *std_cmake_args) + make() + make("install") + diff --git a/var/spack/packages/mesa/package.py b/var/spack/packages/mesa/package.py new file mode 100644 index 0000000000..2dba878a77 --- /dev/null +++ b/var/spack/packages/mesa/package.py @@ -0,0 +1,33 @@ +from spack import * + +class Mesa(Package): + """Mesa is an open-source implementation of the OpenGL + specification - a system for rendering interactive 3D graphics.""" + + homepage = "http://www.mesa3d.org" + url = "ftp://ftp.freedesktop.org/pub/mesa/older-versions/8.x/8.0.5/MesaLib-8.0.5.tar.gz" + # url = "ftp://ftp.freedesktop.org/pub/mesa/10.4.4/MesaLib-10.4.4.tar.gz" + + # version('10.4.4', '8d863a3c209bf5116b2babfccccc68ce') + version('8.0.5', 'cda5d101f43b8784fa60bdeaca4056f2') + + # mesa 7.x, 8.x, 9.x + depends_on("libdrm@2.4.33") + depends_on("llvm@3.0") + + # patch("llvm-fixes.patch") # using newer llvm + + # mesa 10.x + # depends_on("py-mako") + # depends_on("flex") + # depends_on("bison") + # depends_on("dri2proto") + # depends_on("libxcb") + # depends_on("libxshmfence") + + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/mpc/package.py b/var/spack/packages/mpc/package.py new file mode 100644 index 0000000000..6fbfca3007 --- /dev/null +++ b/var/spack/packages/mpc/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +class Mpc(Package): + """Gnu Mpc is a C library for the arithmetic of complex numbers + with arbitrarily high precision and correct rounding of the + result.""" + homepage = "http://www.multiprecision.org" + url = "ftp://ftp.gnu.org/gnu/mpc/mpc-1.0.2.tar.gz" + + version('1.0.2', '68fadff3358fb3e7976c7a398a0af4c3') + + depends_on("gmp") + depends_on("mpfr") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/mpfr/package.py b/var/spack/packages/mpfr/package.py new file mode 100644 index 0000000000..62dac63206 --- /dev/null +++ b/var/spack/packages/mpfr/package.py @@ -0,0 +1,38 @@ +############################################################################## +# Copyright (c) 2013, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Written by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://scalability-llnl.github.io/spack +# Please also see the LICENSE file for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU General Public License (as published by +# the Free Software Foundation) version 2.1 dated February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public License +# along with this program; if not, write to the Free Software Foundation, +# Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + +class Mpfr(Package): + """The MPFR library is a C library for multiple-precision + floating-point computations with correct rounding.""" + homepage = "http://www.mpfr.org" + url = "http://www.mpfr.org/mpfr-current/mpfr-3.1.2.tar.bz2" + + version('3.1.2', 'ee2c3ac63bf0c2359bf08fc3ee094c19') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/mpibash/mpibash-4.3.patch b/var/spack/packages/mpibash/mpibash-4.3.patch new file mode 100644 index 0000000000..17e285b0bf --- /dev/null +++ b/var/spack/packages/mpibash/mpibash-4.3.patch @@ -0,0 +1,1565 @@ +diff -Naur bash-4.3/builtins/circle.def mpibash-4.3/builtins/circle.def +--- bash-4.3/builtins/circle.def 1969-12-31 17:00:00.000000000 -0700 ++++ mpibash-4.3/builtins/circle.def 2014-05-13 11:27:37.314100671 -0600 +@@ -0,0 +1,620 @@ ++This file is circle.def, from which is created circle.c. ++It implements all of the "circle_*" builtins in Bash. ++ ++$PRODUCES circle.c ++ ++#include <config.h> ++ ++#include <stdio.h> ++#if defined (HAVE_UNISTD_H) ++# ifdef _MINIX ++# include <sys/types.h> ++# endif ++# include <unistd.h> ++#endif ++ ++#include "../bashintl.h" ++#include "../shell.h" ++#include "common.h" ++#include "bashgetopt.h" ++#include <libcircle.h> ++ ++extern int running_trap, trap_saved_exit_value; ++ ++static int circle_rank; /* Rank in the Libcircle job */ ++static SHELL_VAR *create_func = NULL; /* User-defined callback function for CIRCLE_cb_create. */ ++static SHELL_VAR *process_func = NULL; /* User-defined callback function for CIRCLE_cb_process. */ ++static SHELL_VAR *reduce_init_func = NULL; /* User-defined callback function for CIRCLE_cb_reduce_init. */ ++static SHELL_VAR *reduce_fini_func = NULL; /* User-defined callback function for CIRCLE_cb_reduce_fini. */ ++static SHELL_VAR *reduce_op_func = NULL; /* User-defined callback function for CIRCLE_cb_reduce_op. */ ++static CIRCLE_handle *current_handle = NULL; /* Active handle within a callback or NULL if not within a callback */ ++static int within_reduction = 0; /* 1=within a reduction callback; 0=not */ ++ ++/* Return with a usage message if no arguments remain. */ ++#define YES_ARGS(LIST) \ ++ if ((LIST) == 0) \ ++ { \ ++ builtin_usage (); \ ++ return (EX_USAGE); \ ++ } ++ ++/* Perform the same operation as bind_variable, but with VALUE being a ++ * number, not a string. */ ++static SHELL_VAR * ++bind_variable_number (name, value, flags) ++ const char *name; ++ long value; ++ int flags; ++{ ++ char numstr[25]; /* String version of VALUE */ ++ ++ sprintf (numstr, "%ld", value); ++ return bind_variable (name, numstr, flags); ++} ++ ++/* Invoke the user-defined creation-callback function (create_func). */ ++static void ++internal_create_func (handle) ++ CIRCLE_handle *handle; ++{ ++ WORD_LIST *funcargs; ++ ++ if (create_func == NULL) ++ return; ++ current_handle = handle; ++ funcargs = make_word_list (make_word ("cb_create"), NULL); ++ execute_shell_function (create_func, funcargs); ++ dispose_words (funcargs); ++ current_handle = NULL; ++} ++ ++/* Invoke the user-defined process-callback function (process_func). */ ++static void ++internal_process_func (handle) ++ CIRCLE_handle *handle; ++{ ++ WORD_LIST *funcargs; ++ ++ if (process_func == NULL) ++ return; ++ current_handle = handle; ++ funcargs = make_word_list (make_word ("cb_process"), NULL); ++ execute_shell_function (process_func, funcargs); ++ dispose_words (funcargs); ++ current_handle = NULL; ++} ++ ++/* Invoke the user-defined reduction-initiation callback function ++ * (reduce_init_func). */ ++static void ++internal_reduce_init_func (void) ++{ ++ WORD_LIST *funcargs; ++ ++ if (reduce_init_func == NULL) ++ return; ++ within_reduction = 1; ++ funcargs = make_word_list (make_word ("cb_reduce_init"), NULL); ++ execute_shell_function (reduce_init_func, funcargs); ++ dispose_words (funcargs); ++ within_reduction = 0; ++} ++ ++/* Invoke the user-defined reduction callback function ++ * (reduce_op_func). */ ++static void ++internal_reduce_op_func (buf1, size1, buf2, size2) ++ const void* buf1; ++ size_t size1; ++ const void* buf2; ++ size_t size2; ++{ ++ WORD_LIST *funcargs; ++ ++ if (reduce_op_func == NULL) ++ return; ++ within_reduction = 1; ++ funcargs = make_word_list (make_word (buf2), NULL); ++ funcargs = make_word_list (make_word (buf1), funcargs); ++ funcargs = make_word_list (make_word ("cb_reduce_op"), funcargs); ++ execute_shell_function (reduce_op_func, funcargs); ++ dispose_words (funcargs); ++ within_reduction = 0; ++} ++ ++/* Invoke the user-defined reduction-finalization callback function ++ * (reduce_fini_func). */ ++static void ++internal_reduce_fini_func (buf, size) ++ const void* buf; ++ size_t size; ++{ ++ WORD_LIST *funcargs; ++ ++ if (reduce_fini_func == NULL) ++ return; ++ funcargs = make_word_list (make_word (buf), NULL); ++ funcargs = make_word_list (make_word ("cb_reduce_fini"), funcargs); ++ execute_shell_function (reduce_fini_func, funcargs); ++ dispose_words (funcargs); ++} ++ ++/* Look up a user-provided callback function. */ ++static int ++find_callback_function (list, user_func) ++ WORD_LIST *list; ++ SHELL_VAR **user_func; ++{ ++ char *funcname; /* Name of the user-defined function. */ ++ ++ /* If no argument was provided, nullify the callback function. */ ++ if (list == NULL) ++ { ++ *user_func = NULL; ++ return EXECUTION_SUCCESS; ++ } ++ ++ /* Get the callback function. */ ++ funcname = list->word->word; ++ list = list->next; ++ no_args (list); ++ *user_func = find_function (funcname); ++ if (*user_func == NULL) ++ { ++ builtin_error (_("function %s not found"), funcname); ++ return EXECUTION_FAILURE; ++ } ++ return EXECUTION_SUCCESS; ++} ++ ++/* Initialize Libcircle. */ ++void ++initialize_libcircle (argc, argv) ++ int argc; ++ char **argv; ++{ ++ circle_rank = CIRCLE_init (argc, argv, CIRCLE_DEFAULT_FLAGS); ++ bind_variable_number ("circle_rank", circle_rank, 0); ++ CIRCLE_enable_logging (CIRCLE_LOG_WARN); ++ CIRCLE_cb_create (internal_create_func); ++ CIRCLE_cb_process (internal_process_func); ++ CIRCLE_cb_reduce_init (internal_reduce_init_func); ++ CIRCLE_cb_reduce_op (internal_reduce_op_func); ++ CIRCLE_cb_reduce_fini (internal_reduce_fini_func); ++} ++ ++/* Finalize Libcircle. */ ++void ++finalize_libcircle (void) ++{ ++ CIRCLE_finalize (); ++} ++ ++/* ---------------------------------------------------------------------- */ ++ ++$BUILTIN circle_set_options ++$FUNCTION circle_set_options_builtin ++$SHORT_DOC circle_set_options [flag]... ++Change Libcircle's run-time behavior. ++ ++Arguments: ++ FLAG "split_random", "split_equal", or "create_global" ++ ++Multiple flags can be provided. If no flags are provided, Libcircle ++reverts to its default options. ++ ++Exit Status: ++Returns 0 unless an invalid option is given. ++$END ++/*'*/ ++ ++/* Here is the circle_set_options builtin. */ ++int ++circle_set_options_builtin (list) ++ WORD_LIST *list; ++{ ++ char *word; /* One argument */ ++ int flags = 0; /* Flags to pass to CIRCLE_set_options */ ++ ++ if (list == NULL) ++ flags = CIRCLE_DEFAULT_FLAGS; ++ else ++ while (list != NULL) ++ { ++ word = list->word->word; ++ if (!strcmp (word, "split_random")) ++ flags |= CIRCLE_SPLIT_RANDOM; ++ else if (!strcmp (word, "split_equal")) ++ flags |= CIRCLE_SPLIT_EQUAL; ++ else if (!strcmp (word, "create_global")) ++ flags |= CIRCLE_CREATE_GLOBAL; ++ else ++ { ++ builtin_error (_("invalid flag \"%s\""), word); ++ return (EXECUTION_FAILURE); ++ } ++ list = list->next; ++ } ++ CIRCLE_set_options (flags); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN circle_cb_create ++$FUNCTION circle_cb_create_builtin ++$SHORT_DOC circle_cb_create [func] ++Register a function that will create work when asked. ++ ++Arguments: ++ FUNC User-defined callback function that will invoke ++ circle_enqueue when called ++ ++If FUNC is omitted, no function will be associated with work creation. ++This can be used to nullify a previous circle_cb_create invocation. ++ ++Exit Status: ++Returns 0 unless an invalid function is given or an error occurs. ++$END ++ ++/* Here is the circle_cb_create builtin. */ ++int ++circle_cb_create_builtin (list) ++ WORD_LIST *list; ++{ ++ return find_callback_function (list, &create_func); ++} ++ ++$BUILTIN circle_cb_process ++$FUNCTION circle_cb_process_builtin ++$SHORT_DOC circle_cb_process [func] ++Register a function that will process work when asked. ++ ++Arguments: ++ FUNC User-defined callback function that will invoke ++ circle_enqueue when called ++ ++If FUNC is omitted, no function will be associated with work processing. ++This can be used to nullify a previous circle_cb_process invocation. ++ ++Exit Status: ++Returns 0 unless an invalid function is given or an error occurs. ++$END ++ ++/* Here is the circle_cb_process builtin. */ ++int ++circle_cb_process_builtin (list) ++ WORD_LIST *list; ++{ ++ return find_callback_function (list, &process_func); ++} ++ ++$BUILTIN circle_begin ++$FUNCTION circle_begin_builtin ++$SHORT_DOC circle_begin ++Begin creation and processing of the distributed work queue. ++ ++Exit Status: ++Returns 0 unless an error occurs. ++$END ++ ++/* Here is the circle_begin builtin. */ ++int ++circle_begin_builtin (list) ++ WORD_LIST *list; ++{ ++ no_args (list); ++ CIRCLE_begin (); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN circle_enqueue ++$FUNCTION circle_enqueue_builtin ++$SHORT_DOC circle_enqueue work ++Enqueue work onto the distributed queue. ++ ++Arguments: ++ WORK "Work" as represented by an arbitrary string of limited ++ size (generally around 4KB) ++ ++Exit Status: ++Returns 0 unless an error occurs. ++$END ++ ++/* Here is the circle_enqueue builtin. */ ++int ++circle_enqueue_builtin (list) ++ WORD_LIST *list; ++{ ++ char *work; /* Work to perform */ ++ ++ /* Extract the work argument. */ ++ YES_ARGS (list); ++ work = list->word->word; ++ list = list->next; ++ no_args (list); ++ ++ /* Complain if we're not within a proper callback function. */ ++ if (current_handle == NULL) ++ { ++ builtin_error (_("not within a Libcircle \"create\" or \"process\" callback function")); ++ return EXECUTION_FAILURE; ++ } ++ ++ /* Enqueue the work. */ ++ if (current_handle->enqueue (work) == -1) ++ return EXECUTION_FAILURE; ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN circle_dequeue ++$FUNCTION circle_dequeue_builtin ++$SHORT_DOC circle_dequeue var ++Dequeue work from the distributed queue into a variable. ++ ++Arguments: ++ VAR Variable in which to receive previously enqueued "work" ++ ++Exit Status: ++Returns 0 unless an error occurs. ++$END ++ ++/* Here is the circle_dequeue builtin. */ ++int ++circle_dequeue_builtin (list) ++ WORD_LIST *list; ++{ ++ char *varname; /* Variable in which to store the work string */ ++ char work[CIRCLE_MAX_STRING_LEN+1]; /* Work to perform */ ++ ++ /* Extract the variable-name argument. */ ++ YES_ARGS (list); ++ varname = list->word->word; ++ list = list->next; ++ no_args (list); ++ ++ /* Complain if we're not within a callback function. */ ++ if (current_handle == NULL) ++ { ++ builtin_error (_("not within a Libcircle callback function")); ++ return EXECUTION_FAILURE; ++ } ++ ++ /* Dequeue the work and bind it to the given variable. */ ++ if (current_handle->dequeue (work) == -1) ++ return EXECUTION_FAILURE; ++ bind_variable (varname, work, 0); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN circle_enable_logging ++$FUNCTION circle_enable_logging_builtin ++$SHORT_DOC circle_enable_logging log_level ++Change Libcircle's logging verbosity ++ ++Arguments: ++ LOG_LEVEL "fatal", "error", "warning", "info", or "debug" ++ ++Exit Status: ++Returns 0 unless an invalid option is given. ++$END ++/*'*/ ++ ++/* Here is the circle_enable_logging builtin. */ ++int ++circle_enable_logging_builtin (list) ++ WORD_LIST *list; ++{ ++ char *word; /* One argument */ ++ CIRCLE_loglevel loglevel; /* Level to set */ ++ ++ /* Parse the log level. */ ++ YES_ARGS (list); ++ word = list->word->word; ++ if (!strcmp (word, "fatal")) ++ loglevel = CIRCLE_LOG_FATAL; ++ else if (!strcmp (word, "error")) ++ loglevel = CIRCLE_LOG_ERR; ++ else if (!strcmp (word, "warning")) ++ loglevel = CIRCLE_LOG_WARN; ++ else if (!strcmp (word, "info")) ++ loglevel = CIRCLE_LOG_INFO; ++ else if (!strcmp (word, "debug")) ++ loglevel = CIRCLE_LOG_DBG; ++ else ++ { ++ builtin_error (_("invalid log level \"%s\""), word); ++ return (EXECUTION_FAILURE); ++ } ++ ++ /* Set the log level. */ ++ CIRCLE_enable_logging (loglevel); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN circle_abort ++$FUNCTION circle_abort_builtin ++$SHORT_DOC circle_abort ++Terminate queue processing. ++ ++Exit Status: ++Returns 0 unless an error occurs. ++$END ++ ++/* Here is the circle_abort builtin. */ ++int ++circle_abort_builtin (list) ++ WORD_LIST *list; ++{ ++ no_args (list); ++ CIRCLE_abort (); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN circle_checkpoint ++$FUNCTION circle_checkpoint_builtin ++$SHORT_DOC circle_checkpoint ++Checkpoint a work queue to disk. ++ ++Write a file called circle${circle_rank}.txt containing the current ++queue state of rank ${circle_rank}. On a later run, a worker can ++invoke circle_read_restarts to repopulate its queue from such a ++checkpoint file. ++ ++Exit Status: ++Returns 0 unless an error occurs. ++$END ++/*'*/ ++ ++/* Here is the circle_checkpoint builtin. */ ++int ++circle_checkpoint_builtin (list) ++ WORD_LIST *list; ++{ ++ no_args (list); ++ CIRCLE_checkpoint (); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN circle_read_restarts ++$FUNCTION circle_read_restarts_builtin ++$SHORT_DOC circle_read_restarts ++Repopulate a work queue from a disk checkpoint. ++ ++Read queue contents from a file called circle${circle_rank}.txt, which ++was previously produced by circle_checkpoint. ++ ++Exit Status: ++Returns 0 unless an error occurs. ++$END ++/*'*/ ++ ++/* Here is the circle_read_restarts builtin. */ ++int ++circle_read_restarts_builtin (list) ++ WORD_LIST *list; ++{ ++ no_args (list); ++ CIRCLE_read_restarts (); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN circle_cb_reduce_init ++$FUNCTION circle_cb_reduce_init_builtin ++$SHORT_DOC circle_cb_reduce_init [func] ++Register a function that will initiate a reduction operation. ++ ++Arguments: ++ FUNC User-defined callback function that will invoke ++ circle_reduce when called ++ ++FUNC will be invoked on all ranks. ++ ++If FUNC is omitted, no function will be associated with reduction ++initialization. This can be used to nullify a previous ++circle_cb_reduce_init invocation. ++ ++Exit Status: ++Returns 0 unless an invalid function is given or an error occurs. ++$END ++ ++/* Here is the circle_cb_reduce_init builtin. */ ++int ++circle_cb_reduce_init_builtin (list) ++ WORD_LIST *list; ++{ ++ return find_callback_function (list, &reduce_init_func); ++} ++ ++$BUILTIN circle_cb_reduce_op ++$FUNCTION circle_cb_reduce_op_builtin ++$SHORT_DOC circle_cb_reduce_op [func] ++Register a function that will complete a reduction operation. ++ ++Arguments: ++ FUNC User-defined callback function that will receive ++ two items to reduce and invoke circle_reduce on ++ the reduced value ++ ++If FUNC is omitted, no function will be associated with reduction ++execution. This can be used to nullify a previous circle_cb_reduce_op ++invocation. ++ ++Exit Status: ++Returns 0 unless an invalid function is given or an error occurs. ++$END ++ ++/* Here is the circle_cb_reduce_op builtin. */ ++int ++circle_cb_reduce_op_builtin (list) ++ WORD_LIST *list; ++{ ++ return find_callback_function (list, &reduce_op_func); ++} ++ ++$BUILTIN circle_cb_reduce_fini ++$FUNCTION circle_cb_reduce_fini_builtin ++$SHORT_DOC circle_cb_reduce_fini [func] ++Register a function that will complete a reduction operation. ++ ++Arguments: ++ FUNC User-defined callback function that will receive ++ the final reduced data ++ ++If FUNC is omitted, no function will be associated with reduction ++completion. This can be used to nullify a previous ++circle_cb_reduce_fini invocation. ++ ++Libcircle guarantees that FUNC will be invoked only on rank 0. ++ ++Exit Status: ++Returns 0 unless an invalid function is given or an error occurs. ++$END ++ ++/* Here is the circle_cb_reduce_fini builtin. */ ++int ++circle_cb_reduce_fini_builtin (list) ++ WORD_LIST *list; ++{ ++ return find_callback_function (list, &reduce_fini_func); ++} ++ ++$BUILTIN circle_reduce ++$FUNCTION circle_reduce_builtin ++$SHORT_DOC circle_reduce work ++Seed the next phase of a reduction operation ++ ++Arguments: ++ WORK "Work" as represented by an arbitrary string of limited ++ size (generally around 4KB) ++ ++This function should be called both by the callback function ++registered with circle_reduce_init and the callback function ++registered with circle_reduce_op. ++ ++Exit Status: ++Returns 0 unless an error occurs. ++$END ++ ++/* Here is the circle_reduce builtin. */ ++int ++circle_reduce_builtin (list) ++ WORD_LIST *list; ++{ ++ char *work; /* Work to perform */ ++ ++ /* Extract the work argument. */ ++ YES_ARGS (list); ++ work = list->word->word; ++ list = list->next; ++ no_args (list); ++ ++ /* Complain if we're not within a proper callback function. */ ++ if (!within_reduction) ++ { ++ builtin_error (_("not within a Libcircle \"reduce_init\" or \"reduce_op\" callback function")); ++ return EXECUTION_FAILURE; ++ } ++ ++ /* Reduce the work. */ ++ CIRCLE_reduce (work, strlen (work)); ++ return EXECUTION_SUCCESS; ++} +diff -Naur bash-4.3/builtins/Makefile.in mpibash-4.3/builtins/Makefile.in +--- bash-4.3/builtins/Makefile.in 2012-05-25 07:29:19.000000000 -0600 ++++ mpibash-4.3/builtins/Makefile.in 2014-05-13 11:27:37.314100671 -0600 +@@ -141,7 +141,9 @@ + $(srcdir)/times.def $(srcdir)/trap.def $(srcdir)/type.def \ + $(srcdir)/ulimit.def $(srcdir)/umask.def $(srcdir)/wait.def \ + $(srcdir)/reserved.def $(srcdir)/pushd.def $(srcdir)/shopt.def \ +- $(srcdir)/printf.def $(srcdir)/complete.def $(srcdir)/mapfile.def ++ $(srcdir)/printf.def $(srcdir)/complete.def $(srcdir)/mapfile.def \ ++ $(srcdir)/mpi.def \ ++@CIRCLE@ $(srcdir)/circle.def + + STATIC_SOURCE = common.c evalstring.c evalfile.c getopt.c bashgetopt.c \ + getopt.h +@@ -153,7 +155,9 @@ + jobs.o kill.o let.o mapfile.o \ + pushd.o read.o return.o set.o setattr.o shift.o source.o \ + suspend.o test.o times.o trap.o type.o ulimit.o umask.o \ +- wait.o getopts.o shopt.o printf.o getopt.o bashgetopt.o complete.o ++ wait.o getopts.o shopt.o printf.o getopt.o bashgetopt.o complete.o \ ++ mpi.o \ ++@CIRCLE@ circle.o + + CREATED_FILES = builtext.h builtins.c psize.aux pipesize.h tmpbuiltins.c \ + tmpbuiltins.h +@@ -317,6 +321,8 @@ + getopts.o: getopts.def + reserved.o: reserved.def + complete.o: complete.def ++@CIRCLE@ circle.o: circle.def ++mpi.o: mpi.def + + # C files + bashgetopt.o: ../config.h $(topdir)/bashansi.h $(BASHINCDIR)/ansi_stdlib.h +@@ -644,6 +650,19 @@ + mapfile.o: $(topdir)/subst.h $(topdir)/externs.h $(BASHINCDIR)/maxpath.h + mapfile.o: $(topdir)/shell.h $(topdir)/syntax.h $(topdir)/variables.h $(topdir)/conftypes.h + mapfile.o: $(topdir)/arrayfunc.h ../pathnames.h ++@CIRCLE@ circle.o: $(topdir)/command.h ../config.h $(BASHINCDIR)/memalloc.h $(topdir)/error.h ++@CIRCLE@ circle.o: $(topdir)/general.h $(topdir)/xmalloc.h $(topdir)/subst.h $(topdir)/externs.h ++@CIRCLE@ circle.o: $(topdir)/quit.h $(topdir)/dispose_cmd.h $(topdir)/make_cmd.h ++@CIRCLE@ circle.o: $(topdir)/shell.h $(topdir)/syntax.h $(topdir)/unwind_prot.h $(topdir)/variables.h $(topdir)/conftypes.h ++@CIRCLE@ circle.o: $(BASHINCDIR)/maxpath.h ../pathnames.h ++mpi.o: ../config.h ../config-top.h ../config-bot.h ../bashintl.h ++mpi.o: ../include/gettext.h ../shell.h ../config.h ../bashjmp.h ++mpi.o: ../include/posixjmp.h ../command.h ../syntax.h ../general.h ++mpi.o: ../bashtypes.h ../include/chartypes.h ../xmalloc.h ../bashansi.h ++mpi.o: ../error.h ../variables.h ../array.h ../assoc.h ../hashlib.h ++mpi.o: ../conftypes.h ../arrayfunc.h ../quit.h ../sig.h ../include/maxpath.h ++mpi.o: ../unwind_prot.h ../dispose_cmd.h ../make_cmd.h ../include/ocache.h ++mpi.o: ../subst.h ../pathnames.h ../externs.h common.h bashgetopt.h + + #bind.o: $(RL_LIBSRC)chardefs.h $(RL_LIBSRC)readline.h $(RL_LIBSRC)keymaps.h + +diff -Naur bash-4.3/builtins/mpi.def mpibash-4.3/builtins/mpi.def +--- bash-4.3/builtins/mpi.def 1969-12-31 17:00:00.000000000 -0700 ++++ mpibash-4.3/builtins/mpi.def 2014-05-13 11:27:37.314100671 -0600 +@@ -0,0 +1,744 @@ ++This file is mpi.def, from which is created mpi.c. ++It implements all of the "mpi_*" builtins in Bash. ++ ++$PRODUCES mpi.c ++ ++#include <config.h> ++ ++#include <stdio.h> ++#if defined (HAVE_UNISTD_H) ++# ifdef _MINIX ++# include <sys/types.h> ++# endif ++# include <unistd.h> ++#endif ++ ++#include "../bashintl.h" ++#include "../shell.h" ++#include "common.h" ++#include "bashgetopt.h" ++#include <mpi.h> ++ ++extern int running_trap, trap_saved_exit_value; ++ ++/* Keep track of who we are within MPI_COMM_WORLD. */ ++static int mpi_rank; ++static int mpi_num_ranks; ++ ++/* Try an MPI operation. Return with an error message on failure. */ ++#define MPI_TRY(STMT) \ ++ do \ ++ { \ ++ int mpierr; \ ++ mpierr = STMT; \ ++ if (mpierr != MPI_SUCCESS) \ ++ return report_mpi_error (mpierr); \ ++ } \ ++ while (0) ++ ++/* Return with a usage message if no arguments remain. */ ++#define YES_ARGS(LIST) \ ++ if ((LIST) == 0) \ ++ { \ ++ builtin_usage (); \ ++ return (EX_USAGE); \ ++ } ++ ++/* Return with an error message if a given variable is read-only or if ++ * we can't write to it for any other reason (e.g., it's defined as a ++ * function). */ ++#define REQUIRE_WRITABLE(NAME) \ ++ do \ ++ { \ ++ SHELL_VAR *bindvar = find_shell_variable (NAME); \ ++ if (bindvar) \ ++ { \ ++ if (readonly_p (bindvar)) \ ++ { \ ++ err_readonly (NAME); \ ++ return (EXECUTION_FAILURE); \ ++ } \ ++ if (unbind_variable (NAME) == -1) \ ++ { \ ++ builtin_error ("Failed to write to variable %s", NAME); \ ++ return (EXECUTION_FAILURE); \ ++ } \ ++ } \ ++ } \ ++ while (0) ++ ++/* Initialize MPI. */ ++void ++initialize_mpi (argc, argv) ++ int argc; ++ char **argv; ++{ ++ int init_done; ++ ++ MPI_Initialized (&init_done); ++ if (!init_done) ++ MPI_Init (&argc, &argv); ++ MPI_Errhandler_set (MPI_COMM_WORLD, MPI_ERRORS_RETURN); ++ MPI_Comm_rank (MPI_COMM_WORLD, &mpi_rank); ++ MPI_Comm_size (MPI_COMM_WORLD, &mpi_num_ranks); ++} ++ ++/* Finalize MPI. */ ++void ++finalize_mpi () ++{ ++ MPI_Finalize (); ++} ++ ++/* Parse an operation name into an MPI_Op. Return 1 on success, 0 on ++ * failure. */ ++static int ++parse_operation (char *name, MPI_Op *op) ++{ ++ /* Define a mapping from operator names to MPI_Op values. */ ++ typedef struct { ++ char *name; /* Operation name (e.g., "sum") */ ++ MPI_Op value; /* Operation value (e.g., MPI_SUM) */ ++ } opname2value_t; ++ static opname2value_t oplist[] = { ++ {"max", MPI_MAX}, ++ {"min", MPI_MIN}, ++ {"sum", MPI_SUM}, ++ {"prod", MPI_PROD}, ++ {"land", MPI_LAND}, ++ {"band", MPI_BAND}, ++ {"lor", MPI_LOR}, ++ {"bor", MPI_BOR}, ++ {"lxor", MPI_LXOR}, ++ {"bxor", MPI_BXOR}, ++ {"maxloc", MPI_MAXLOC}, ++ {"minloc", MPI_MINLOC} ++ }; ++ size_t i; ++ ++ for (i = 0; i < sizeof(oplist)/sizeof(opname2value_t); i++) ++ if (!strcmp(name, oplist[i].name)) ++ { ++ *op = oplist[i].value; ++ if (i > 0) ++ { ++ /* As a performance optimization, bubble up the value we ++ * just found. */ ++ opname2value_t prev = oplist[i - 1]; ++ oplist[i - 1] = oplist[i]; ++ oplist[i] = prev; ++ } ++ return 1; ++ } ++ return 0; ++} ++ ++/* Report an error to the user and return EXECUTION_FAILURE. */ ++static int ++report_mpi_error (mpierr) ++ int mpierr; ++{ ++ char errstr[MPI_MAX_ERROR_STRING]; ++ int errstrlen; ++ ++ MPI_Error_string (mpierr, errstr, &errstrlen); ++ builtin_error ("%s", errstr); ++ return EXECUTION_FAILURE; ++} ++ ++/* Perform the same operation as bind_variable, but with VALUE being a ++ * number, not a string. */ ++static SHELL_VAR * ++bind_variable_number (name, value, flags) ++ const char *name; ++ long value; ++ int flags; ++{ ++ char numstr[25]; /* String version of VALUE */ ++ ++ sprintf (numstr, "%ld", value); ++ return bind_variable (name, numstr, flags); ++} ++ ++/* Perform the same operation as bind_array_variable, but with VALUE ++ * being a number, not a string. */ ++static SHELL_VAR * ++bind_array_variable_number (name, ind, value, flags) ++ char *name; ++ arrayind_t ind; ++ long value; ++ int flags; ++{ ++ char numstr[25]; /* String version of VALUE */ ++ ++ sprintf (numstr, "%ld", value); ++ return bind_array_variable (name, ind, numstr, flags); ++} ++ ++/* Define a reduction-type function (allreduce, scan, exscan, etc.). */ ++typedef int (*reduction_func_t)(void *, void *, int, MPI_Datatype, MPI_Op, MPI_Comm); ++ ++/* Perform any reduction-type operation (allreduce, scan, exscan, etc.). */ ++static int ++reduction_like (list, funcname, func) ++ WORD_LIST *list; ++ char *funcname; ++ reduction_func_t func; ++{ ++ char *word; /* One argument */ ++ struct { ++ long int value; /* Reduced value */ ++ int rank; /* Rank associated with the above */ ++ } number, result; ++ MPI_Op operation = MPI_SUM; /* Operation to perform */ ++ char *varname; /* Name of the variable to bind the results to */ ++ intmax_t n; ++ int i; ++ ++ /* Parse "-O OPERATION" (optional), where OPERATION is a reduction ++ * operation. */ ++ YES_ARGS (list); ++ word = list->word->word; ++ if (ISOPTION (word, 'O')) ++ { ++ list = list->next; ++ if (list == 0) ++ { ++ sh_needarg (funcname); ++ return (EX_USAGE); ++ } ++ word = list->word->word; ++ if (!parse_operation (word, &operation)) ++ { ++ sh_invalidopt ("-O"); ++ return (EX_USAGE); ++ } ++ list = list->next; ++ } ++ ++ /* Parse the argument, which must be a number. */ ++ YES_ARGS (list); ++ word = list->word->word; ++ if (!legal_number (word, &n)) ++ { ++ sh_neednumarg (funcname); ++ return (EX_USAGE); ++ } ++ number.value = (long int) n; ++ number.rank = mpi_rank; ++ list = list->next; ++ ++ /* Parse the target variable, which must not be read-only. */ ++ YES_ARGS (list); ++ varname = list->word->word; ++ if (mpi_rank != 0 || func != MPI_Exscan) ++ REQUIRE_WRITABLE (varname); ++ list = list->next; ++ no_args (list); ++ ++ /* Perform the reduction operation. Bind the given array variable ++ * to the result and, for minloc/maxloc, the associated rank. */ ++ if (mpi_rank != 0 || func != MPI_Exscan) { ++ bind_array_variable (varname, 0, "", 0); ++ bind_array_variable (varname, 1, "", 0); ++ } ++ if (operation == MPI_MINLOC || operation == MPI_MAXLOC) ++ { ++ MPI_TRY (func (&number, &result, 1, MPI_LONG_INT, operation, MPI_COMM_WORLD)); ++ if (mpi_rank != 0 || func != MPI_Exscan) ++ bind_array_variable_number (varname, 1, result.rank, 0); ++ } ++ else ++ MPI_TRY (func (&number.value, &result.value, 1, MPI_LONG, operation, MPI_COMM_WORLD)); ++ if (mpi_rank != 0 || func != MPI_Exscan) ++ bind_array_variable_number (varname, 0, result.value, 0); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN mpi_comm_rank ++$FUNCTION mpi_comm_rank_builtin ++$SHORT_DOC mpi_comm_rank name ++Return the process's rank in the MPI job. ++ ++Arguments: ++ NAME Scalar variable in which to receive the rank ++ ++Exit Status: ++Returns 0 unless an invalid option is given. ++$END ++/*'*/ ++ ++/* Here is the mpi_comm_rank builtin. */ ++int ++mpi_comm_rank_builtin (list) ++ WORD_LIST *list; ++{ ++ char *varname; /* Name of the variable to bind the results to */ ++ ++ YES_ARGS (list); ++ varname = list->word->word; ++ REQUIRE_WRITABLE (varname); ++ list = list->next; ++ no_args (list); ++ bind_variable_number (varname, mpi_rank, 0); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN mpi_comm_size ++$FUNCTION mpi_comm_size_builtin ++$SHORT_DOC mpi_comm_size name ++Return the total number of ranks in the MPI job. ++ ++Arguments: ++ NAME Scalar variable in which to receive the number of ranks ++ ++Exit Status: ++Returns 0 unless an invalid option is given. ++$END ++ ++/* Here is the mpi_comm_size builtin. */ ++int ++mpi_comm_size_builtin (list) ++ WORD_LIST *list; ++{ ++ char *varname; /* Name of the variable to bind the results to */ ++ ++ YES_ARGS (list); ++ varname = list->word->word; ++ REQUIRE_WRITABLE (varname); ++ list = list->next; ++ no_args (list); ++ bind_variable_number (varname, mpi_num_ranks, 0); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN mpi_abort ++$FUNCTION mpi_abort_builtin ++$SHORT_DOC mpi_abort [n] ++Abort all processes in the MPI job and exit the shell. ++ ++Exits not only the caller's shell (with a status of N) but also all ++remote shells that are part of the same MPI job. If N is omitted, the ++exit status is that of the last command executed. ++ ++This command should be used only in extreme circumstances. It is ++better for each process to exit normally on its own. ++$END ++/*'*/ ++ ++/* Here is the mpi_abort builtin. */ ++int ++mpi_abort_builtin (list) ++ WORD_LIST *list; ++{ ++ int exit_value; ++ ++ exit_value = (running_trap == 1 && list == 0) ? trap_saved_exit_value : get_exitstat (list); /* Copied from exit.def */ ++ MPI_TRY (MPI_Abort (MPI_COMM_WORLD, exit_value)); ++ return EXECUTION_FAILURE; ++} ++ ++$BUILTIN mpi_send ++$FUNCTION mpi_send_builtin ++$SHORT_DOC mpi_send [-t tag] rank message ++Send a message to a remote process in the same MPI job. ++ ++Options: ++ -t TAG Send the message using tag TAG (default: 0). TAG must ++ be a nonnegative integer. ++ ++Arguments: ++ RANK Whom to send the message to. RANK must be an integer in ++ the range [0, $(mpi_comm_size)-1]. ++ ++ MESSAGE String to send to rank RANK. ++ ++Exit Status: ++Returns 0 unless an invalid option is given or an error occurs. ++$END ++ ++/* Here is the mpi_send builtin. */ ++int ++mpi_send_builtin (list) ++ WORD_LIST *list; ++{ ++ char *word; /* One argument */ ++ intmax_t target_rank; /* MPI target rank */ ++ char *message; /* Message to send to rank target_rank */ ++ intmax_t tag = 0; /* Message tag to use */ ++ ++ /* Parse "-t TAG" (optional), where TAG is a number or "any". */ ++ YES_ARGS (list); ++ word = list->word->word; ++ if (ISOPTION (word, 't')) ++ { ++ list = list->next; ++ if (list == 0) ++ { ++ sh_needarg ("mpi_recv"); ++ return (EX_USAGE); ++ } ++ word = list->word->word; ++ if (!legal_number (word, &tag)) ++ { ++ sh_neednumarg ("-t"); ++ return (EX_USAGE); ++ } ++ list = list->next; ++ } ++ else if (*word == '-') ++ { ++ sh_invalidopt (word); ++ builtin_usage (); ++ return (EX_USAGE); ++ } ++ ++ /* Parse the target rank, which must be a number. */ ++ YES_ARGS (list); ++ word = list->word->word; ++ if (!legal_number (word, &target_rank)) ++ { ++ builtin_error (_("mpi_send: numeric rank required")); ++ return (EX_USAGE); ++ } ++ list = list->next; ++ ++ /* Parse the message to send. */ ++ YES_ARGS (list); ++ message = list->word->word; ++ list = list->next; ++ no_args (list); ++ ++ /* Send the message. */ ++ MPI_TRY (MPI_Send (message, strlen(message)+1, MPI_BYTE, (int)target_rank, (int)tag, MPI_COMM_WORLD)); ++ return EXECUTION_SUCCESS; ++} ++ ++ ++$BUILTIN mpi_recv ++$FUNCTION mpi_recv_builtin ++$SHORT_DOC mpi_recv [-t tag] rank name ++Receive a message from a remote process in the same MPI job. ++ ++Options: ++ -t TAG Receive only messages sent using tag TAG (default: 0). ++ TAG must be either a nonnegative integer or the string ++ "any" to receive messages sent using any tag. ++ ++Arguments: ++ RANK Receive only messages sent from sender RANK. RANK ++ must either be in the range [0, $(mpi_comm_size)-1] or ++ be the string "any" to receive messages from any sender. ++ ++ NAME Array variable in which to receive the message, sender ++ rank, and tag. ++ ++Exit Status: ++Returns 0 unless an invalid option is given or an error occurs. ++$END ++ ++/* Here is the mpi_recv builtin. */ ++int ++mpi_recv_builtin (list) ++ WORD_LIST *list; ++{ ++ char *word; /* One argument */ ++ intmax_t source_rank; /* MPI source rank */ ++ char *endptr; /* Used for parsing strings into numbers */ ++ MPI_Status status; /* Status of an MPI operation */ ++ int count; /* Message length in bytes */ ++ intmax_t tag = 0; /* Message tag to use */ ++ char *varname; /* Name of the variable to bind the results to */ ++ static char *message = NULL; /* Message received from MPI */ ++ static size_t alloced = 0; /* Number of bytes allocated for the above */ ++ int opt; /* Parsed option */ ++ ++ /* Parse any options provided. */ ++ reset_internal_getopt (); ++ while ((opt = internal_getopt (list, "t:")) != -1) ++ { ++ switch (opt) ++ { ++ case 't': ++ if (!strcmp (list_optarg, "any")) ++ tag = MPI_ANY_TAG; ++ else if (!legal_number (list_optarg, &tag)) ++ { ++ builtin_error (_("-t: numeric argument or \"any\" required")); ++ return (EX_USAGE); ++ } ++ break; ++ ++ default: ++ sh_invalidopt (word); ++ builtin_usage (); ++ return (EX_USAGE); ++ } ++ } ++ list = loptend; ++ ++ /* Parse the source rank, which must be a number or "any". */ ++ YES_ARGS (list); ++ word = list->word->word; ++ if (!legal_number (word, &source_rank)) ++ { ++ if (!strcmp (word, "any")) ++ source_rank = MPI_ANY_SOURCE; ++ else ++ { ++ builtin_error (_("mpi_recv: numeric rank or \"any\" required")); ++ return (EX_USAGE); ++ } ++ } ++ list = list->next; ++ ++ /* Parse the target variable, which must not be read-only. */ ++ YES_ARGS (list); ++ varname = list->word->word; ++ REQUIRE_WRITABLE (varname); ++ list = list->next; ++ no_args (list); ++ ++ /* Receive a message. Because we don't know long the message will ++ * be, we first probe to get the length. */ ++ MPI_TRY (MPI_Probe ((int)source_rank, (int)tag, MPI_COMM_WORLD, &status)); ++ MPI_TRY (MPI_Get_count (&status, MPI_BYTE, &count)); ++ if (alloced < count) ++ { ++ message = xrealloc (message, count); ++ alloced = count; ++ } ++ MPI_TRY (MPI_Recv (message, count, MPI_BYTE, status.MPI_SOURCE, status.MPI_TAG, MPI_COMM_WORLD, &status)); ++ bind_array_variable (varname, 0, message, 0); ++ bind_array_variable_number (varname, 1, status.MPI_SOURCE, 0); ++ bind_array_variable_number (varname, 2, status.MPI_TAG, 0); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN mpi_barrier ++$FUNCTION mpi_barrier_builtin ++$SHORT_DOC mpi_barrier ++Synchronizes all of the processes in the MPI job. ++ ++No process will return from mpi_barrier until all processes have ++called mpi_barrier. ++ ++Exit Status: ++Returns 0 unless an invalid option is given or an error occurs. ++$END ++ ++/* Here is the mpi_barrier builtin. */ ++int ++mpi_barrier_builtin (list) ++ WORD_LIST *list; ++{ ++ no_args (list); ++ MPI_TRY (MPI_Barrier (MPI_COMM_WORLD)); ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN mpi_bcast ++$FUNCTION mpi_bcast_builtin ++$SHORT_DOC mpi_bcast [message] name ++Broadcast a message to all processes in the same MPI job. ++ ++Arguments: ++ MESSAGE String to broadcast from one process to all the others. ++ ++ NAME Scalar variable in which to receive the broadcast message. ++ ++Exactly one process in the MPI job must specify a message to ++broadcast. No process will return from mpi_bcast until all processes ++have called mpi_bcast. ++ ++Exit Status: ++Returns 0 unless an invalid option is given or an error occurs. ++$END ++ ++/* Here is the mpi_bcast builtin. */ ++int ++mpi_bcast_builtin (list) ++ WORD_LIST *list; ++{ ++ char *word; /* One argument */ ++ int root; /* MPI root rank */ ++ char *root_message; /* Message to broadcast */ ++ int msglen; /* Length in bytes of the above (including the NULL byte) */ ++ char *varname; /* Name of the variable to bind the results to */ ++ static int *all_lengths = NULL; /* List of every rank's msglen */ ++ static char *message = NULL; /* Message received from the root */ ++ static int alloced = 0; /* Bytes allocated for the above */ ++ int i; ++ ++ /* Parse the optional message and target variable, which must not be ++ * read-only. */ ++ YES_ARGS (list); ++ if (list->next == NULL) ++ { ++ /* Non-root */ ++ root_message = NULL; ++ msglen = -1; ++ } ++ else ++ { ++ /* Root */ ++ root_message = list->word->word; ++ msglen = (int) strlen(root_message) + 1; ++ list = list->next; ++ } ++ varname = list->word->word; ++ REQUIRE_WRITABLE (varname); ++ list = list->next; ++ no_args (list); ++ ++ /* Acquire global agreement on the root and the message size. */ ++ if (all_lengths == NULL) ++ all_lengths = xmalloc (mpi_num_ranks*sizeof(int)); ++ MPI_TRY (MPI_Allgather (&msglen, 1, MPI_INT, all_lengths, 1, MPI_INT, MPI_COMM_WORLD)); ++ root = -1; ++ for (i = 0; i < mpi_num_ranks; i++) ++ { ++ if (all_lengths[i] == -1) ++ continue; ++ if (root != -1) ++ { ++ builtin_error (_("mpi_bcast: more than one process specified a message")); ++ return (EXECUTION_FAILURE); ++ } ++ root = i; ++ msglen = all_lengths[i]; ++ } ++ if (root == -1) ++ { ++ builtin_error (_("mpi_bcast: no process specified a message")); ++ return (EXECUTION_FAILURE); ++ } ++ ++ /* Broadcast the message. */ ++ if (mpi_rank == root) ++ { ++ MPI_TRY (MPI_Bcast (root_message, msglen, MPI_BYTE, root, MPI_COMM_WORLD)); ++ bind_variable (varname, root_message, 0); ++ } ++ else ++ { ++ if (alloced < msglen) ++ { ++ message = xrealloc (message, msglen); ++ alloced = msglen; ++ } ++ MPI_TRY (MPI_Bcast (message, msglen, MPI_BYTE, root, MPI_COMM_WORLD)); ++ bind_variable (varname, message, 0); ++ } ++ return EXECUTION_SUCCESS; ++} ++ ++$BUILTIN mpi_scan ++$FUNCTION mpi_scan_builtin ++$SHORT_DOC mpi_scan number name ++Perform an inclusive scan across all processes in the same MPI job. ++ ++ -O OPERATION Operation to perform. Must be one of "max", "min", ++ "sum", "prod", "land", "band", "lor", "bor", "lxor", ++ "bxor", "maxloc", or "minloc" (default: "sum"). ++ ++Arguments: ++ NUMBER Integer to use in the scan operation. ++ ++ NAME Array variable in which to receive the result and, in ++ the case of maxloc and minloc, the associated rank. ++ ++In an inclusive-scan operation, each process i presents a number, ++a[i]. Once all processes in the MPI job have presented their number, ++the command returns a[0] to rank 0, a[0]+a[1] to rank 1, ++a[0]+a[1]+a[2] to rank 2, and so forth. The -O option enables "+" to ++be replaced with other operations. ++ ++Inclusive scans can be useful for assigning a unique index to each ++process in the MPI job. ++ ++Exit Status: ++Returns 0 unless an invalid option is given or an error occurs. ++$END ++ ++/* Here is the mpi_scan builtin. */ ++int ++mpi_scan_builtin (list) ++ WORD_LIST *list; ++{ ++ return reduction_like (list, "mpi_scan", MPI_Scan); ++} ++ ++$BUILTIN mpi_exscan ++$FUNCTION mpi_exscan_builtin ++$SHORT_DOC mpi_exscan number name ++Perform an exclusive scan across all processes in the same MPI job. ++ ++ -O OPERATION Operation to perform. Must be one of "max", "min", ++ "sum", "prod", "land", "band", "lor", "bor", "lxor", ++ "bxor", "maxloc", or "minloc" (default: "sum"). ++ ++Arguments: ++ NUMBER Integer to use in the scan operation. ++ ++ NAME Array variable in which to receive the result and, in ++ the case of maxloc and minloc, the associated rank. ++ ++In a exclusive-scan operation, each process i presents a number, a[i]. ++Once all processes in the MPI job have presented their number, the ++command assigns a[0] to NAME on rank 1, a[0]+a[1] to NAME on rank 2, ++a[0]+a[1]+a[2] to NAME on rank 3, and so forth. No assignment is ++performed on rank 0. The -O option enables "+" to be replaced with ++other operations. ++ ++Exclusive scans can be useful for assigning a unique index to each ++process in the MPI job. ++ ++Exit Status: ++Returns 0 unless an invalid option is given or an error occurs. ++$END ++ ++/* Here is the mpi_exscan builtin. */ ++int ++mpi_exscan_builtin (list) ++ WORD_LIST *list; ++{ ++ return reduction_like (list, "mpi_exscan", MPI_Exscan); ++} ++ ++$BUILTIN mpi_allreduce ++$FUNCTION mpi_allreduce_builtin ++$SHORT_DOC mpi_allreduce number name ++Reduce numbers from all processes in an MPI job to a single number. ++ ++Options: ++ ++ -O OPERATION Operation to perform. Must be one of "max", "min", ++ "sum", "prod", "land", "band", "lor", "bor", "lxor", ++ "bxor", "maxloc", or "minloc" (default: "sum"). ++ ++Arguments: ++ NUMBER Integer to use in the allreduce operation. ++ ++ NAME Array variable in which to receive the result and, in ++ the case of maxloc and minloc, the associated rank. ++ ++In an all-reduce operation, each process i presents a number, a[i]. ++Once all processes in the MPI job have presented their number, the ++command returns a[0]+a[1]+...+a[n-1] to all ranks. The -O option ++enables "+" to be replaced with other operations. ++ ++All-reduces can be useful for reaching global agreement (e.g., of a ++termination condition). ++ ++Exit Status: ++Returns 0 unless an invalid option is given or an error occurs. ++$END ++ ++/* Here is the mpi_allreduce builtin. */ ++int ++mpi_allreduce_builtin (list) ++ WORD_LIST *list; ++{ ++ return reduction_like (list, "mpi_allreduce", MPI_Allreduce); ++} +diff -Naur bash-4.3/config.h.in mpibash-4.3/config.h.in +--- bash-4.3/config.h.in 2013-06-29 15:35:33.000000000 -0600 ++++ mpibash-4.3/config.h.in 2014-05-13 11:27:37.314100671 -0600 +@@ -1147,6 +1147,12 @@ + /* Define if you have the `__argz_stringify' function. */ + #undef HAVE___ARGZ_STRINGIFY + ++/* Define if you have both the <libcircle.h> header file and the libcircle library. */ ++#undef HAVE_LIBCIRCLE ++ ++/* Define if you have the `CIRCLE_cb_reduce_op' function. */ ++#undef HAVE_CIRCLE_CB_REDUCE_OP ++ + /* End additions for lib/intl */ + + #include "config-bot.h" +diff -Naur bash-4.3/configure.ac mpibash-4.3/configure.ac +--- bash-4.3/configure.ac 2014-02-11 08:37:53.000000000 -0700 ++++ mpibash-4.3/configure.ac 2014-05-13 11:27:37.302100179 -0600 +@@ -24,7 +24,7 @@ + AC_REVISION([for Bash 4.3, version 4.063])dnl + + define(bashvers, 4.3) +-define(relstatus, release) ++define(relstatus, MPI) + + AC_INIT([bash], bashvers-relstatus, [bug-bash@gnu.org]) + +@@ -813,6 +813,21 @@ + fi + ]) + ++dnl Ensure that we can find an MPI library. ++AC_CHECK_FUNCS([MPI_Init], [], [ ++ AC_MSG_ERROR([Cannot continue without MPI. Consider specifying CC=mpicc.])]) ++ ++dnl If we have Libcircle, use it, too. ++AC_SEARCH_LIBS([CIRCLE_cb_create], [circle], [AC_CHECK_HEADERS([libcircle.h])]) ++if test "x$ac_cv_header_libcircle_h" = xyes; then ++ libcircle_make_prefix="" ++ AC_DEFINE([HAVE_LIBCIRCLE], [1], [Define if you have the Libcircle header and library.]) ++ AC_CHECK_FUNCS([CIRCLE_cb_reduce_op]) ++else ++ libcircle_make_prefix="#" ++fi ++AC_SUBST([CIRCLE], [$libcircle_make_prefix]) ++ + BASH_CHECK_DECL(strtoimax) + BASH_CHECK_DECL(strtol) + BASH_CHECK_DECL(strtoll) +diff -Naur bash-4.3/Makefile.in mpibash-4.3/Makefile.in +--- bash-4.3/Makefile.in 2014-01-25 14:27:30.000000000 -0700 ++++ mpibash-4.3/Makefile.in 2014-05-13 11:27:37.314100671 -0600 +@@ -104,7 +104,7 @@ + VERSPROG = bashversion$(EXEEXT) + VERSOBJ = bashversion.$(OBJEXT) + +-Program = bash$(EXEEXT) ++Program = mpibash$(EXEEXT) + Version = @BASHVERS@ + PatchLevel = `$(BUILD_DIR)/$(VERSPROG) -p` + RELSTATUS = @RELSTATUS@ +diff -Naur bash-4.3/shell.c mpibash-4.3/shell.c +--- bash-4.3/shell.c 2014-01-14 06:04:32.000000000 -0700 ++++ mpibash-4.3/shell.c 2014-05-13 11:27:37.314100671 -0600 +@@ -107,6 +107,13 @@ + extern char *primary_prompt, *secondary_prompt; + extern char *this_command_name; + ++extern void initialize_mpi __P((int, char **)); ++extern void finalize_mpi __P((void)); ++#ifdef HAVE_LIBCIRCLE ++extern void initialize_libcircle __P((int, char **)); ++extern void finalize_libcircle __P((void)); ++#endif ++ + /* Non-zero means that this shell has already been run; i.e. you should + call shell_reinitialize () if you need to start afresh. */ + int shell_initialized = 0; +@@ -324,7 +331,7 @@ + static void init_interactive_script __P((void)); + + static void set_shell_name __P((char *)); +-static void shell_initialize __P((void)); ++static void shell_initialize __P((int, char **)); + static void shell_reinitialize __P((void)); + + static void show_shell_usage __P((FILE *, int)); +@@ -561,7 +568,7 @@ + + /* From here on in, the shell must be a normal functioning shell. + Variables from the environment are expected to be set, etc. */ +- shell_initialize (); ++ shell_initialize (argc, argv); + + set_default_lang (); + set_default_locale_vars (); +@@ -941,6 +948,12 @@ + end_job_control (); + #endif /* JOB_CONTROL */ + ++#ifdef HAVE_LIBCIRCLE ++ finalize_libcircle (); ++#else ++ finalize_mpi (); ++#endif ++ + /* Always return the exit status of the last command to our parent. */ + sh_exit (s); + } +@@ -1691,7 +1704,9 @@ + /* Do whatever is necessary to initialize the shell. + Put new initializations in here. */ + static void +-shell_initialize () ++shell_initialize (argc, argv) ++ int argc; ++ char **argv; + { + char hostname[256]; + +@@ -1760,6 +1775,17 @@ + initialize_shell_options (privileged_mode||running_setuid); + initialize_bashopts (privileged_mode||running_setuid); + #endif ++ ++ /* Initialize Libcircle and MPI. */ ++#ifdef HAVE_LIBCIRCLE ++ initialize_libcircle (argc, argv); ++ initialize_mpi (argc, argv); ++ bind_variable ("libcircle", "yes", 0); ++#else ++ initialize_mpi (argc, argv); ++ bind_variable ("libcircle", "no", 0); ++#endif ++ bind_variable ("mpibash", "yes", 0); + } + + /* Function called by main () when it appears that the shell has already diff --git a/var/spack/packages/mpibash/package.py b/var/spack/packages/mpibash/package.py new file mode 100644 index 0000000000..d0f6dafed6 --- /dev/null +++ b/var/spack/packages/mpibash/package.py @@ -0,0 +1,32 @@ +import os +from spack import * + +class Mpibash(Package): + """Parallel scripting right from the Bourne-Again Shell (Bash)""" + homepage = "http://www.ccs3.lanl.gov/~pakin/software/mpibash-4.3.html" + + version('4.3', '81348932d5da294953e15d4814c74dd1', + url="http://ftp.gnu.org/gnu/bash/bash-4.3.tar.gz") + + # patch -p1 < ../mpibash-4.3.patch + patch('mpibash-4.3.patch', level=1, when='@4.3') + + # above patch modifies configure.ac + depends_on('autoconf') + + # uses MPI_Exscan which is in MPI-1.2 and later + depends_on('mpi@1.2:') + + depends_on('libcircle') + + def install(self, spec, prefix): + # run autoconf to rebuild configure + autoconf = which('autoconf') + autoconf() + + configure("--prefix=" + prefix, + "CC=mpicc") + + make(parallel=False) + + make("install") diff --git a/var/spack/packages/muster/package.py b/var/spack/packages/muster/package.py new file mode 100644 index 0000000000..31d03f4b45 --- /dev/null +++ b/var/spack/packages/muster/package.py @@ -0,0 +1,21 @@ +from spack import * + +class Muster(Package): + """The Muster library provides implementations of sequential and + parallel K-Medoids clustering algorithms. It is intended as a + general framework for parallel cluster analysis, particularly + for performance data analysis on systems with very large + numbers of processes. + """ + homepage = "https://github.com/scalability-llnl/muster" + url = "https://github.com/scalability-llnl/muster/archive/v1.0.tar.gz" + + version('1.0', '2eec6979a4a36d3a65a792d12969be16') + + depends_on("boost") + depends_on("mpi") + + def install(self, spec, prefix): + cmake(".", *std_cmake_args) + make() + make("install") diff --git a/var/spack/packages/nasm/package.py b/var/spack/packages/nasm/package.py new file mode 100644 index 0000000000..933b6a62c5 --- /dev/null +++ b/var/spack/packages/nasm/package.py @@ -0,0 +1,14 @@ +from spack import * + +class Nasm(Package): + """NASM (Netwide Assembler) is an 80x86 assembler designed for + portability and modularity. It includes a disassembler as well.""" + homepage = "http://www.nasm.us" + url = "http://www.nasm.us/pub/nasm/releasebuilds/2.11.06/nasm-2.11.06.tar.xz" + + version('2.11.06', '2b958e9f5d200641e6fc9564977aecc5') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/ncurses/package.py b/var/spack/packages/ncurses/package.py index 4885caa628..a22e83503f 100644 --- a/var/spack/packages/ncurses/package.py +++ b/var/spack/packages/ncurses/package.py @@ -10,10 +10,14 @@ class Ncurses(Package): homepage = "http://invisible-island.net/ncurses/ncurses.html" version('5.9', '8cb9c412e5f2d96bc6f459aa8c6282a1', - url='http://invisible-island.net/datafiles/release/ncurses.tar.gz') + url='http://ftp.gnu.org/pub/gnu/ncurses/ncurses-5.9.tar.gz') def install(self, spec, prefix): - configure("--prefix=%s" % prefix) + configure("--prefix=%s" % prefix, + "--with-shared", + "--enable-widec", + "--disable-pc-files", + "--without-ada") make() make("install") diff --git a/var/spack/packages/netcdf/package.py b/var/spack/packages/netcdf/package.py new file mode 100644 index 0000000000..34284ea725 --- /dev/null +++ b/var/spack/packages/netcdf/package.py @@ -0,0 +1,28 @@ +from spack import * + +class Netcdf(Package): + """NetCDF is a set of software libraries and self-describing, machine-independent + data formats that support the creation, access, and sharing of array-oriented + scientific data.""" + + homepage = "http://www.unidata.ucar.edu/software/netcdf/" + url = "ftp://ftp.unidata.ucar.edu/pub/netcdf/netcdf-4.3.3.tar.gz" + + version('4.3.3', '5fbd0e108a54bd82cb5702a73f56d2ae') + + # Dependencies: + # >HDF5 + depends_on("hdf5") + + def install(self, spec, prefix): + configure( + "--prefix=%s" % prefix, + "--disable-dap", # Disable DAP. + "--disable-shared", # Don't build shared libraries (use static libs). + "CPPFLAGS=-I%s/include" % spec['hdf5'].prefix, # Link HDF5's include dir. + "LDFLAGS=-L%s/lib" % spec['hdf5'].prefix) # Link HDF5's lib dir. + + make("install") + + # Check the newly installed netcdf package. Currently disabled. + # make("check") diff --git a/var/spack/packages/nettle/package.py b/var/spack/packages/nettle/package.py new file mode 100644 index 0000000000..0f20bc06df --- /dev/null +++ b/var/spack/packages/nettle/package.py @@ -0,0 +1,15 @@ +from spack import * + +class Nettle(Package): + """The Nettle package contains the low-level cryptographic library + that is designed to fit easily in many contexts.""" + + homepage = "http://www.example.com" + url = "http://ftp.gnu.org/gnu/nettle/nettle-2.7.1.tar.gz" + + version('2.7', '2caa1bd667c35db71becb93c5d89737f') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/ompss/package.py b/var/spack/packages/ompss/package.py index 544671de38..e09e0a624f 100644 --- a/var/spack/packages/ompss/package.py +++ b/var/spack/packages/ompss/package.py @@ -16,8 +16,10 @@ class Ompss(Package): APIs like CUDA or OpenCL. Our OmpSs environment is built on top of our Mercurium compiler and Nanos++ runtime system.""" homepage = "http://pm.bsc.es/" - url = "http://pm.bsc.es/sites/default/files/ftp/ompss/releases/ompss-14.06.tar.gz" - version('14.06', '99be5dce74c0d7eea42636d26af47b4181ae2e11') + url = "http://pm.bsc.es/sites/default/files/ftp/ompss/releases/ompss-14.10.tar.gz" + list_url = 'http://pm.bsc.es/ompss-downloads' + + version('14.10', '404d161265748f2f96bb35fd8c7e79ee') # all dependencies are optional, really depends_on("mpi") @@ -46,4 +48,3 @@ class Ompss(Package): configure("--prefix=%s" % prefix, "--with-nanox=%s" % prefix, "--enable-ompss", "--with-mpi=%s" % mpi.prefix, *openmp_options) make() make("install") - diff --git a/var/spack/packages/openmpi/package.py b/var/spack/packages/openmpi/package.py index 1ef8a8f000..7e84cbaf65 100644 --- a/var/spack/packages/openmpi/package.py +++ b/var/spack/packages/openmpi/package.py @@ -13,9 +13,9 @@ class Openmpi(Package): version('1.8.2', 'ab538ed8e328079d566fc797792e016e', url='http://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.2.tar.gz') - version('1.6.5', '03aed2a4aa4d0b27196962a2a65fc475', url = "http://www.open-mpi.org/software/ompi/v1.6/downloads/openmpi-1.6.5.tar.bz2") + patch('ad_lustre_rwcontig_open_source.patch', when="@1.6.5") patch('llnl-platforms.patch', when="@1.6.5") @@ -27,8 +27,8 @@ class Openmpi(Package): # TODO: use variants for this, e.g. +lanl, +llnl, etc. # use this for LANL builds, but for LLNL builds, we need: # "--with-platform=contrib/platform/llnl/optimized" - if self.version == ver("1.6.5"): - confg_args.append("--with-platform=contrib/platform/lanl/tlcc2/optimized-nopanasas") + if self.version == ver("1.6.5") and '+lanl' in spec: + config_args.append("--with-platform=contrib/platform/lanl/tlcc2/optimized-nopanasas") # TODO: Spack should make it so that you can't actually find # these compilers if they're "disabled" for the current diff --git a/var/spack/packages/pango/package.py b/var/spack/packages/pango/package.py new file mode 100644 index 0000000000..df43625bf5 --- /dev/null +++ b/var/spack/packages/pango/package.py @@ -0,0 +1,19 @@ +from spack import * + +class Pango(Package): + """Pango is a library for laying out and rendering of text, with + an emphasis on internationalization. It can be used anywhere + that text layout is needed, though most of the work on Pango so + far has been done in the context of the GTK+ widget toolkit.""" + homepage = "http://www.pango.org" + url = "http://ftp.gnome.org/pub/gnome/sources/pango/1.36/pango-1.36.8.tar.xz" + + version('1.36.8', '217a9a753006275215fa9fa127760ece') + + depends_on("harfbuzz") + depends_on("cairo") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/pcre/package.py b/var/spack/packages/pcre/package.py new file mode 100644 index 0000000000..3424048a6c --- /dev/null +++ b/var/spack/packages/pcre/package.py @@ -0,0 +1,15 @@ +from spack import * + +class Pcre(Package): + """The PCRE package contains Perl Compatible Regular Expression + libraries. These are useful for implementing regular expression + pattern matching using the same syntax and semantics as Perl 5.""" + homepage = "http://www.pcre.org""" + url = "ftp://ftp.csx.cam.ac.uk/pub/software/programming/pcre/pcre-8.36.tar.bz2" + + version('8.36', 'b767bc9af0c20bc9c1fe403b0d41ad97') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/pixman/package.py b/var/spack/packages/pixman/package.py new file mode 100644 index 0000000000..895cbdbca5 --- /dev/null +++ b/var/spack/packages/pixman/package.py @@ -0,0 +1,18 @@ +from spack import * + +class Pixman(Package): + """The Pixman package contains a library that provides low-level + pixel manipulation features such as image compositing and + trapezoid rasterization.""" + homepage = "http://www.pixman.org" + url = "http://cairographics.org/releases/pixman-0.32.6.tar.gz" + + version('0.32.6', '3a30859719a41bd0f5cccffbfefdd4c2') + + depends_on("libpng") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--disable-gtk") + make() + make("install") diff --git a/var/spack/packages/ppl/package.py b/var/spack/packages/ppl/package.py new file mode 100644 index 0000000000..018d5c523d --- /dev/null +++ b/var/spack/packages/ppl/package.py @@ -0,0 +1,28 @@ +from spack import * + +class Ppl(Package): + """The Parma Polyhedra Library (PPL) provides numerical + abstractions especially targeted at applications in the field of + analysis and verification of complex systems. These abstractions + include convex polyhedra, some special classes of polyhedra shapes + that offer interesting complexity/precision tradeoffs, and grids + which represent regularly spaced points that satisfy a set of + linear congruence relations. The library also supports finite + powersets and products of polyhedra and grids, a mixed integer + linear programming problem solver using an exact-arithmetic + version of the simplex algorithm, a parametric integer programming + solver, and primitives for termination analysis via the automatic + synthesis of linear ranking functions.""" + + homepage = "http://bugseng.com/products/ppl/" + url = "http://bugseng.com/products/ppl/download/ftp/releases/1.1/ppl-1.1.tar.gz" + + version('1.1', '4f2422c0ef3f409707af32108deb30a7') + + depends_on("gmp") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--with-gmp=%s" % spec['gmp'].prefix) + make() + make("install") diff --git a/var/spack/packages/py-basemap/package.py b/var/spack/packages/py-basemap/package.py new file mode 100644 index 0000000000..45f1085ba1 --- /dev/null +++ b/var/spack/packages/py-basemap/package.py @@ -0,0 +1,20 @@ +from spack import * +import os + +class PyBasemap(Package): + """The matplotlib basemap toolkit is a library for plotting 2D data on maps in Python.""" + homepage = "http://matplotlib.org/basemap/" + url = "https://downloads.sourceforge.net/project/matplotlib/matplotlib-toolkits/basemap-1.0.7/basemap-1.0.7.tar.gz" + + version('1.0.7', '48c0557ced9e2c6e440b28b3caff2de8') + + extends('python') + depends_on('py-setuptools') + depends_on('py-numpy') + depends_on('py-matplotlib') + depends_on('py-pil') + depends_on("geos") + + def install(self, spec, prefix): + env['GEOS_DIR'] = spec['geos'].prefix + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-biopython/package.py b/var/spack/packages/py-biopython/package.py new file mode 100644 index 0000000000..8ecaf48626 --- /dev/null +++ b/var/spack/packages/py-biopython/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyBiopython(Package): + """It is a distributed collaborative effort to develop Python libraries and applications which address the needs of current and future work in bioinformatics.""" + homepage = "http://biopython.org/wiki/Main_Page" + url = "http://biopython.org/DIST/biopython-1.65.tar.gz" + + version('1.65', '143e7861ade85c0a8b5e2bbdd1da1f67') + + extends('python') + depends_on('py-mx') + depends_on('py-numpy') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-cython/package.py b/var/spack/packages/py-cython/package.py new file mode 100644 index 0000000000..af67a15526 --- /dev/null +++ b/var/spack/packages/py-cython/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyCython(Package): + """The Cython compiler for writing C extensions for the Python language.""" + homepage = "https://pypi.python.org/pypi/cython" + url = "https://pypi.python.org/packages/source/C/Cython/Cython-0.21.2.tar.gz" + + version('0.21.2', 'd21adb870c75680dc857cd05d41046a4') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-dateutil/package.py b/var/spack/packages/py-dateutil/package.py new file mode 100644 index 0000000000..3bd2f2ca13 --- /dev/null +++ b/var/spack/packages/py-dateutil/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyDateutil(Package): + """Extensions to the standard Python datetime module.""" + homepage = "https://pypi.python.org/pypi/dateutil" + url = "https://pypi.python.org/packages/source/p/python-dateutil/python-dateutil-2.4.0.tar.gz" + + version('2.4.0', '75714163bb96bedd07685cdb2071b8bc') + + extends('python') + depends_on('py-setuptools') + depends_on('py-six') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-epydoc/package.py b/var/spack/packages/py-epydoc/package.py new file mode 100644 index 0000000000..af05510504 --- /dev/null +++ b/var/spack/packages/py-epydoc/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyEpydoc(Package): + """Epydoc is a tool for generating API documentation documentation for Python modules, based on their docstrings.""" + homepage = "https://pypi.python.org/pypi/epydoc" + url = "https://pypi.python.org/packages/source/e/epydoc/epydoc-3.0.1.tar.gz" + + version('3.0.1', '36407974bd5da2af00bf90ca27feeb44') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-gnuplot/package.py b/var/spack/packages/py-gnuplot/package.py new file mode 100644 index 0000000000..ede4472c03 --- /dev/null +++ b/var/spack/packages/py-gnuplot/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyGnuplot(Package): + """Gnuplot.py is a Python package that allows you to create graphs from within Python using the gnuplot plotting program.""" + homepage = "http://gnuplot-py.sourceforge.net/" + url = "http://downloads.sourceforge.net/project/gnuplot-py/Gnuplot-py/1.8/gnuplot-py-1.8.tar.gz" + + version('1.8', 'abd6f571e7aec68ae7db90a5217cd5b1') + + extends('python') + depends_on('py-numpy') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-h5py/package.py b/var/spack/packages/py-h5py/package.py new file mode 100644 index 0000000000..f72b3ac06e --- /dev/null +++ b/var/spack/packages/py-h5py/package.py @@ -0,0 +1,18 @@ +from spack import * +import re + +class PyH5py(Package): + """The h5py package provides both a high- and low-level interface to the HDF5 library from Python.""" + homepage = "https://pypi.python.org/pypi/h5py" + url = "https://pypi.python.org/packages/source/h/h5py/h5py-2.4.0.tar.gz" + + version('2.4.0', '80c9a94ae31f84885cc2ebe1323d6758') + + extends('python', ignore=lambda f: re.match(r'cy*', f)) + depends_on('hdf5') + depends_on('py-numpy') + depends_on('py-cython') + + def install(self, spec, prefix): + python('setup.py', 'configure', '--hdf5=%s' % spec['hdf5'].prefix) + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-ipython/package.py b/var/spack/packages/py-ipython/package.py new file mode 100644 index 0000000000..907ea9edcd --- /dev/null +++ b/var/spack/packages/py-ipython/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyIpython(Package): + """IPython provides a rich toolkit to help you make the most out of using Python interactively.""" + homepage = "https://pypi.python.org/pypi/ipython" + url = "https://pypi.python.org/packages/source/i/ipython/ipython-2.3.1.tar.gz" + + version('2.3.1', '2b7085525dac11190bfb45bb8ec8dcbf') + + extends('python') + depends_on('py-pygments') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-libxml2/package.py b/var/spack/packages/py-libxml2/package.py new file mode 100644 index 0000000000..59005428e4 --- /dev/null +++ b/var/spack/packages/py-libxml2/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyLibxml2(Package): + """A Python wrapper around libxml2.""" + homepage = "https://xmlsoft.org/python.html" + url = "ftp://xmlsoft.org/libxml2/python/libxml2-python-2.6.21.tar.gz" + + version('2.6.21', '229dd2b3d110a77defeeaa73af83f7f3') + + extends('python') + depends_on('libxml2') + depends_on('libxslt') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-mako/package.py b/var/spack/packages/py-mako/package.py new file mode 100644 index 0000000000..3e91ffd8e5 --- /dev/null +++ b/var/spack/packages/py-mako/package.py @@ -0,0 +1,16 @@ +from spack import * + +class PyMako(Package): + """A super-fast templating language that borrows the best + ideas from the existing templating languages.""" + + homepage = "https://pypi.python.org/pypi/mako" + url = "https://pypi.python.org/packages/source/M/Mako/Mako-1.0.1.tar.gz" + + version('1.0.1', '9f0aafd177b039ef67b90ea350497a54') + + depends_on('py-setuptools') + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-matplotlib/package.py b/var/spack/packages/py-matplotlib/package.py new file mode 100644 index 0000000000..04037f004e --- /dev/null +++ b/var/spack/packages/py-matplotlib/package.py @@ -0,0 +1,46 @@ +from spack import * +import os + +class PyMatplotlib(Package): + """Python plotting package.""" + homepage = "https://pypi.python.org/pypi/matplotlib" + url = "https://pypi.python.org/packages/source/m/matplotlib/matplotlib-1.4.2.tar.gz" + + version('1.4.2', '7d22efb6cce475025733c50487bd8898') + + extends('python', ignore=r'bin/nosetests.*$') + + depends_on('py-pyside') + depends_on('py-ipython') + depends_on('py-pyparsing') + depends_on('py-six') + depends_on('py-dateutil') + depends_on('py-pytz') + depends_on('py-nose') + depends_on('py-numpy') + + depends_on('qt') + depends_on('bzip2') + depends_on('tcl') + depends_on('tk') + depends_on('qhull') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) + + if str(self.version) == '1.4.2': + # hack to fix configuration file + config_file = None + for p,d,f in os.walk(prefix.lib): + for file in f: + if file.find('matplotlibrc') != -1: + config_file = join_path(p, 'matplotlibrc') + print config_file + if config_file == None: + raise InstallError('could not find config file') + filter_file(r'backend : pyside', + 'backend : Qt4Agg', + config_file) + filter_file(r'#backend.qt4 : PyQt4', + 'backend.qt4 : PySide', + config_file) diff --git a/var/spack/packages/py-mpi4py/package.py b/var/spack/packages/py-mpi4py/package.py new file mode 100644 index 0000000000..8001689a18 --- /dev/null +++ b/var/spack/packages/py-mpi4py/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyMpi4py(Package): + """This package provides Python bindings for the Message Passing Interface (MPI) standard. It is implemented on top of the MPI-1/MPI-2 specification and exposes an API which grounds on the standard MPI-2 C++ bindings.""" + homepage = "https://pypi.python.org/pypi/mpi4py" + url = "https://pypi.python.org/packages/source/m/mpi4py/mpi4py-1.3.1.tar.gz" + + version('1.3.1', 'dbe9d22bdc8ed965c23a7ceb6f32fc3c') + extends('python') + depends_on('py-setuptools') + depends_on('mpi') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-mx/package.py b/var/spack/packages/py-mx/package.py new file mode 100644 index 0000000000..717ee0562b --- /dev/null +++ b/var/spack/packages/py-mx/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyMx(Package): + """The eGenix.com mx Base Distribution for Python is a collection of professional quality software tools which enhance Python's usability in many important areas such as fast text searching, date/time processing and high speed data types.""" + homepage = "http://www.egenix.com/products/python/mxBase/" + url = "https://downloads.egenix.com/python/egenix-mx-base-3.2.8.tar.gz" + + version('3.2.8', '9d9d3a25f9dc051a15e97f452413423b') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-nose/package.py b/var/spack/packages/py-nose/package.py new file mode 100644 index 0000000000..155019289d --- /dev/null +++ b/var/spack/packages/py-nose/package.py @@ -0,0 +1,16 @@ +from spack import * + +class PyNose(Package): + """nose extends the test loading and running features of unittest, + making it easier to write, find and run tests.""" + + homepage = "https://pypi.python.org/pypi/nose" + url = "https://pypi.python.org/packages/source/n/nose/nose-1.3.4.tar.gz" + + version('1.3.4', '6ed7169887580ddc9a8e16048d38274d') + + extends('python', ignore=r'bin/nosetests.*$') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-numpy/package.py b/var/spack/packages/py-numpy/package.py new file mode 100644 index 0000000000..e6cb6a464f --- /dev/null +++ b/var/spack/packages/py-numpy/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyNumpy(Package): + """array processing for numbers, strings, records, and objects.""" + homepage = "https://pypi.python.org/pypi/numpy" + url = "https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz" + + version('1.9.1', '78842b73560ec378142665e712ae4ad9') + + extends('python') + depends_on('py-nose') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pexpect/package.py b/var/spack/packages/py-pexpect/package.py new file mode 100644 index 0000000000..ff5fac84e0 --- /dev/null +++ b/var/spack/packages/py-pexpect/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPexpect(Package): + """Pexpect allows easy control of interactive console applications.""" + homepage = "https://pypi.python.org/pypi/pexpect" + url = "https://pypi.python.org/packages/source/p/pexpect/pexpect-3.3.tar.gz" + + version('3.3', '0de72541d3f1374b795472fed841dce8') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pil/package.py b/var/spack/packages/py-pil/package.py new file mode 100644 index 0000000000..743b761981 --- /dev/null +++ b/var/spack/packages/py-pil/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyPil(Package): + """The Python Imaging Library (PIL) adds image processing capabilities to your Python interpreter. This library supports many file formats, and provides powerful image processing and graphics capabilities.""" + + homepage = "http://www.pythonware.com/products/pil/" + url = "http://effbot.org/media/downloads/Imaging-1.1.7.tar.gz" + + version('1.1.7', 'fc14a54e1ce02a0225be8854bfba478e') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pmw/package.py b/var/spack/packages/py-pmw/package.py new file mode 100644 index 0000000000..56131811e9 --- /dev/null +++ b/var/spack/packages/py-pmw/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPmw(Package): + """Pmw is a toolkit for building high-level compound widgets, or megawidgets, constructed using other widgets as component parts.""" + homepage = "https://pypi.python.org/pypi/Pmw" + url = "https://pypi.python.org/packages/source/P/Pmw/Pmw-2.0.0.tar.gz" + + version('2.0.0', 'c7c3f26c4f5abaa99807edefee578fc0') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pychecker/package.py b/var/spack/packages/py-pychecker/package.py new file mode 100644 index 0000000000..bda5a746aa --- /dev/null +++ b/var/spack/packages/py-pychecker/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPychecker(Package): + """""" + homepage = "http://pychecker.sourceforge.net/" + url = "http://sourceforge.net/projects/pychecker/files/pychecker/0.8.19/pychecker-0.8.19.tar.gz" + + version('0.8.19', 'c37182863dfb09209d6ba4f38fce9d2b') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pygments/package.py b/var/spack/packages/py-pygments/package.py new file mode 100644 index 0000000000..990eebde65 --- /dev/null +++ b/var/spack/packages/py-pygments/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PyPygments(Package): + """Pygments is a syntax highlighting package written in Python.""" + homepage = "https://pypi.python.org/pypi/pygments" + url = "https://pypi.python.org/packages/source/P/Pygments/Pygments-2.0.1.tar.gz" + + version('2.0.1', 'e0daf4c14a4fe5b630da765904de4d6c') + + extends('python') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pylint/package.py b/var/spack/packages/py-pylint/package.py new file mode 100644 index 0000000000..7a6ee7dbbc --- /dev/null +++ b/var/spack/packages/py-pylint/package.py @@ -0,0 +1,16 @@ +from spack import * +import re + +class PyPylint(Package): + """array processing for numbers, strings, records, and objects.""" + homepage = "https://pypi.python.org/pypi/pylint" + url = "https://pypi.python.org/packages/source/p/pylint/pylint-1.4.1.tar.gz" + + version('1.4.1', 'df7c679bdcce5019389038847e4de622') + + extends('python') + depends_on('py-nose') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pyparsing/package.py b/var/spack/packages/py-pyparsing/package.py new file mode 100644 index 0000000000..a6e50ad139 --- /dev/null +++ b/var/spack/packages/py-pyparsing/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPyparsing(Package): + """A Python Parsing Module.""" + homepage = "https://pypi.python.org/pypi/pyparsing" + url = "https://pypi.python.org/packages/source/p/pyparsing/pyparsing-2.0.3.tar.gz" + + version('2.0.3', '0fe479be09fc2cf005f753d3acc35939') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-pyqt/package.py b/var/spack/packages/py-pyqt/package.py new file mode 100644 index 0000000000..8edca105bb --- /dev/null +++ b/var/spack/packages/py-pyqt/package.py @@ -0,0 +1,24 @@ +from spack import * + +class PyPyqt(Package): + """PyQt is a set of Python v2 and v3 bindings for Digia's Qt + application framework and runs on all platforms supported by Qt + including Windows, MacOS/X and Linux.""" + homepage = "http://www.riverbankcomputing.com/software/pyqt/intro" + url = "http://sourceforge.net/projects/pyqt/files/PyQt4/PyQt-4.11.3/PyQt-x11-gpl-4.11.3.tar.gz" + + version('4.11.3', '997c3e443165a89a559e0d96b061bf70') + + extends('python') + depends_on('py-sip') + + # TODO: allow qt5 when conditional deps are supported. + # TODO: Fix version matching so that @4 works like @:4 + depends_on('qt@:4') + + def install(self, spec, prefix): + python('configure.py', + '--confirm-license', + '--destdir=%s' % site_packages_dir) + make() + make('install') diff --git a/var/spack/packages/py-pyside/package.py b/var/spack/packages/py-pyside/package.py new file mode 100644 index 0000000000..bb5da44d02 --- /dev/null +++ b/var/spack/packages/py-pyside/package.py @@ -0,0 +1,45 @@ +from spack import * +import os + +class PyPyside(Package): + """array processing for numbers, strings, records, and objects.""" + homepage = "https://pypi.python.org/pypi/pyside" + url = "https://pypi.python.org/packages/source/P/PySide/PySide-1.2.2.tar.gz" + + version('1.2.2', 'c45bc400c8a86d6b35f34c29e379e44d') + + # TODO: make build dependency + # depends_on("cmake") + + extends('python') + depends_on('py-setuptools') + depends_on('qt@:4') + + def patch(self): + """Undo PySide RPATH handling and add Spack RPATH.""" + # Figure out the special RPATH + pypkg = self.spec['python'].package + rpath = self.rpath + rpath.append(os.path.join(self.prefix, pypkg.site_packages_dir, 'PySide')) + + # Add Spack's standard CMake args to the sub-builds. + # They're called BY setup.py so we have to patch it. + filter_file( + r'OPTION_CMAKE,', + r'OPTION_CMAKE, ' + ( + '"-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=FALSE", ' + '"-DCMAKE_INSTALL_RPATH=%s",' % ':'.join(rpath)), + 'setup.py') + + # PySide tries to patch ELF files to remove RPATHs + # Disable this and go with the one we set. + filter_file( + r'^\s*rpath_cmd\(pyside_path, srcpath\)', + r'#rpath_cmd(pyside_path, srcpath)', + 'pyside_postinstall.py') + + + def install(self, spec, prefix): + python('setup.py', 'install', + '--prefix=%s' % prefix, + '--jobs=%s' % make_jobs) diff --git a/var/spack/packages/py-pytz/package.py b/var/spack/packages/py-pytz/package.py new file mode 100644 index 0000000000..80bcfe82ca --- /dev/null +++ b/var/spack/packages/py-pytz/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyPytz(Package): + """World timezone definitions, modern and historical.""" + homepage = "https://pypi.python.org/pypi/pytz" + url = "https://pypi.python.org/packages/source/p/pytz/pytz-2014.10.tar.gz" + + version('2014.10', 'eb1cb941a20c5b751352c52486aa1dd7') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-rpy2/package.py b/var/spack/packages/py-rpy2/package.py new file mode 100644 index 0000000000..dd0c0672af --- /dev/null +++ b/var/spack/packages/py-rpy2/package.py @@ -0,0 +1,16 @@ +from spack import * + +class PyRpy2(Package): + """rpy2 is a redesign and rewrite of rpy. It is providing a low-level interface to R from Python, a proposed high-level interface, including wrappers to graphical libraries, as well as R-like structures and functions.""" + homepage = "https://pypi.python.org/pypi/rpy2" + url = "https://pypi.python.org/packages/source/r/rpy2/rpy2-2.5.4.tar.gz" + + version('2.5.4', '115a20ac30883f096da2bdfcab55196d') + + extends('python') + depends_on('py-setuptools') + + depends_on('R') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-scientificpython/package.py b/var/spack/packages/py-scientificpython/package.py new file mode 100644 index 0000000000..020d830703 --- /dev/null +++ b/var/spack/packages/py-scientificpython/package.py @@ -0,0 +1,17 @@ +from spack import * + +class PyScientificpython(Package): + """ScientificPython is a collection of Python modules for + scientific computing. It contains support for geometry, + mathematical functions, statistics, physical units, IO, + visualization, and parallelization.""" + + homepage = "https://sourcesup.renater.fr/projects/scientific-py/" + url = "https://sourcesup.renater.fr/frs/download.php/4411/ScientificPython-2.8.1.tar.gz" + + version('2.8.1', '73ee0df19c7b58cdf2954261f0763c77') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-scikit-learn/package.py b/var/spack/packages/py-scikit-learn/package.py new file mode 100644 index 0000000000..c59c05a619 --- /dev/null +++ b/var/spack/packages/py-scikit-learn/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PyScikitLearn(Package): + """""" + homepage = "https://pypi.python.org/pypi/scikit-learn" + url = "https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.15.2.tar.gz" + + version('0.15.2', 'd9822ad0238e17b382a3c756ea94fe0d') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-scipy/package.py b/var/spack/packages/py-scipy/package.py new file mode 100644 index 0000000000..b5325b919f --- /dev/null +++ b/var/spack/packages/py-scipy/package.py @@ -0,0 +1,15 @@ +from spack import * + +class PyScipy(Package): + """Scientific Library for Python.""" + homepage = "https://pypi.python.org/pypi/scipy" + url = "https://pypi.python.org/packages/source/s/scipy/scipy-0.15.0.tar.gz" + + version('0.15.0', '639112f077f0aeb6d80718dc5019dc7a') + + extends('python') + depends_on('py-nose') + depends_on('py-numpy') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-setuptools/package.py b/var/spack/packages/py-setuptools/package.py new file mode 100644 index 0000000000..755288d55c --- /dev/null +++ b/var/spack/packages/py-setuptools/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PySetuptools(Package): + """Easily download, build, install, upgrade, and uninstall Python packages.""" + homepage = "https://pypi.python.org/pypi/setuptools" + url = "https://pypi.python.org/packages/source/s/setuptools/setuptools-11.3.tar.gz" + + version('11.3.1', '01f69212e019a2420c1693fb43593930') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-shiboken/package.py b/var/spack/packages/py-shiboken/package.py new file mode 100644 index 0000000000..e4bf4ce07e --- /dev/null +++ b/var/spack/packages/py-shiboken/package.py @@ -0,0 +1,45 @@ +from spack import * +import os + +class PyShiboken(Package): + """Shiboken generates bindings for C++ libraries using CPython source code.""" + homepage = "https://shiboken.readthedocs.org/" + url = "https://pypi.python.org/packages/source/S/Shiboken/Shiboken-1.2.2.tar.gz" + + version('1.2.2', '345cfebda221f525842e079a6141e555') + + # TODO: make build dependency + # depends_on("cmake") + + extends('python') + depends_on("py-setuptools") + depends_on("libxml2") + depends_on("qt@:4.8") + + def patch(self): + """Undo Shiboken RPATH handling and add Spack RPATH.""" + # Add Spack's standard CMake args to the sub-builds. + # They're called BY setup.py so we have to patch it. + pypkg = self.spec['python'].package + rpath = self.rpath + rpath.append(os.path.join(self.prefix, pypkg.site_packages_dir, 'Shiboken')) + + filter_file( + r'OPTION_CMAKE,', + r'OPTION_CMAKE, ' + ( + '"-DCMAKE_INSTALL_RPATH_USE_LINK_PATH=FALSE", ' + '"-DCMAKE_INSTALL_RPATH=%s",' % ':'.join(rpath)), + 'setup.py') + + # Shiboken tries to patch ELF files to remove RPATHs + # Disable this and go with the one we set. + filter_file( + r'^\s*rpath_cmd\(shiboken_path, srcpath\)', + r'#rpath_cmd(shiboken_path, srcpath)', + 'shiboken_postinstall.py') + + + def install(self, spec, prefix): + python('setup.py', 'install', + '--prefix=%s' % prefix, + '--jobs=%s' % make_jobs) diff --git a/var/spack/packages/py-sip/package.py b/var/spack/packages/py-sip/package.py new file mode 100644 index 0000000000..6753bdd2a5 --- /dev/null +++ b/var/spack/packages/py-sip/package.py @@ -0,0 +1,20 @@ +from spack import * +import os + +class PySip(Package): + """SIP is a tool that makes it very easy to create Python bindings for C and C++ libraries.""" + homepage = "http://www.riverbankcomputing.com/software/sip/intro" + url = "http://sourceforge.net/projects/pyqt/files/sip/sip-4.16.5/sip-4.16.5.tar.gz" + + version('4.16.5', '6d01ea966a53e4c7ae5c5e48c40e49e5') + + extends('python') + + def install(self, spec, prefix): + python('configure.py', + '--destdir=%s' % site_packages_dir, + '--bindir=%s' % spec.prefix.bin, + '--incdir=%s' % python_include_dir, + '--sipdir=%s' % os.path.join(spec.prefix.share, 'sip')) + make() + make('install') diff --git a/var/spack/packages/py-six/package.py b/var/spack/packages/py-six/package.py new file mode 100644 index 0000000000..05c5bd00a9 --- /dev/null +++ b/var/spack/packages/py-six/package.py @@ -0,0 +1,14 @@ +from spack import * + +class PySix(Package): + """Python 2 and 3 compatibility utilities.""" + homepage = "https://pypi.python.org/pypi/six" + url = "https://pypi.python.org/packages/source/s/six/six-1.9.0.tar.gz" + + version('1.9.0', '476881ef4012262dfc8adc645ee786c4') + + extends('python') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-sympy/package.py b/var/spack/packages/py-sympy/package.py new file mode 100644 index 0000000000..c17e35b95f --- /dev/null +++ b/var/spack/packages/py-sympy/package.py @@ -0,0 +1,13 @@ +from spack import * + +class PySympy(Package): + """SymPy is a Python library for symbolic mathematics.""" + homepage = "https://pypi.python.org/pypi/sympy" + url = "https://pypi.python.org/packages/source/s/sympy/sympy-0.7.6.tar.gz" + + version('0.7.6', '3d04753974306d8a13830008e17babca') + + extends('python') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/py-virtualenv/package.py b/var/spack/packages/py-virtualenv/package.py new file mode 100644 index 0000000000..2d10d440a6 --- /dev/null +++ b/var/spack/packages/py-virtualenv/package.py @@ -0,0 +1,15 @@ +from spack import * +import shutil + +class PyVirtualenv(Package): + """virtualenv is a tool to create isolated Python environments.""" + homepage = "http://virtualenv.readthedocs.org/projects/virtualenv/" + url = "https://pypi.python.org/packages/source/v/virtualenv/virtualenv-1.11.6.tar.gz" + + version('1.11.6', 'f61cdd983d2c4e6aeabb70b1060d6f49') + + extends('python') + depends_on('py-setuptools') + + def install(self, spec, prefix): + python('setup.py', 'install', '--prefix=%s' % prefix) diff --git a/var/spack/packages/python/package.py b/var/spack/packages/python/package.py new file mode 100644 index 0000000000..31a12ea653 --- /dev/null +++ b/var/spack/packages/python/package.py @@ -0,0 +1,157 @@ +import os +import re +from contextlib import closing +from llnl.util.lang import match_predicate + +from spack import * +import spack + + +class Python(Package): + """The Python programming language.""" + homepage = "http://www.python.org" + url = "http://www.python.org/ftp/python/2.7.8/Python-2.7.8.tar.xz" + + extendable = True + + version('2.7.8', 'd235bdfa75b8396942e360a70487ee00') + + depends_on("openssl") + depends_on("bzip2") + depends_on("readline") + depends_on("ncurses") + depends_on("sqlite") + + def install(self, spec, prefix): + # Need this to allow python build to find the Python installation. + env['PYTHONHOME'] = prefix + + # Rest of install is pretty standard. + configure("--prefix=%s" % prefix, + "--with-threads", + "--enable-shared") + make() + make("install") + + + # ======================================================================== + # Set up environment to make install easy for python extensions. + # ======================================================================== + + @property + def python_lib_dir(self): + return os.path.join('lib', 'python%d.%d' % self.version[:2]) + + + @property + def python_include_dir(self): + return os.path.join('include', 'python%d.%d' % self.version[:2]) + + + @property + def site_packages_dir(self): + return os.path.join(self.python_lib_dir, 'site-packages') + + + def setup_dependent_environment(self, module, spec, ext_spec): + """Called before python modules' install() methods. + + In most cases, extensions will only need to have one line:: + + python('setup.py', 'install', '--prefix=%s' % prefix) + """ + # Python extension builds can have a global python executable function + module.python = Executable(join_path(spec.prefix.bin, 'python')) + + # Add variables for lib/pythonX.Y and lib/pythonX.Y/site-packages dirs. + module.python_lib_dir = os.path.join(ext_spec.prefix, self.python_lib_dir) + module.python_include_dir = os.path.join(ext_spec.prefix, self.python_include_dir) + module.site_packages_dir = os.path.join(ext_spec.prefix, self.site_packages_dir) + + # Make the site packages directory if it does not exist already. + mkdirp(module.site_packages_dir) + + # Set PYTHONPATH to include site-packages dir for the + # extension and any other python extensions it depends on. + python_paths = [] + for d in ext_spec.traverse(): + if d.package.extends(self.spec): + python_paths.append(os.path.join(d.prefix, self.site_packages_dir)) + os.environ['PYTHONPATH'] = ':'.join(python_paths) + + + # ======================================================================== + # Handle specifics of activating and deactivating python modules. + # ======================================================================== + + def python_ignore(self, ext_pkg, args): + """Add some ignore files to activate/deactivate args.""" + ignore_arg = args.get('ignore', lambda f: False) + + # Always ignore easy-install.pth, as it needs to be merged. + patterns = [r'easy-install\.pth$'] + + # Ignore pieces of setuptools installed by other packages. + if ext_pkg.name != 'py-setuptools': + patterns.append(r'/site\.pyc?$') + patterns.append(r'setuptools\.pth') + patterns.append(r'bin/easy_install[^/]*$') + patterns.append(r'setuptools.*egg$') + + return match_predicate(ignore_arg, patterns) + + + def write_easy_install_pth(self, exts): + paths = [] + for ext in sorted(exts.values()): + ext_site_packages = os.path.join(ext.prefix, self.site_packages_dir) + easy_pth = "%s/easy-install.pth" % ext_site_packages + + if not os.path.isfile(easy_pth): + continue + + with closing(open(easy_pth)) as f: + for line in f: + line = line.rstrip() + + # Skip lines matching these criteria + if not line: continue + if re.search(r'^(import|#)', line): continue + if (ext.name != 'py-setuptools' and + re.search(r'setuptools.*egg$', line)): continue + + paths.append(line) + + site_packages = os.path.join(self.prefix, self.site_packages_dir) + main_pth = "%s/easy-install.pth" % site_packages + + if not paths: + if os.path.isfile(main_pth): + os.remove(main_pth) + + else: + with closing(open(main_pth, 'w')) as f: + f.write("import sys; sys.__plen = len(sys.path)\n") + for path in paths: + f.write("%s\n" % path) + f.write("import sys; new=sys.path[sys.__plen:]; del sys.path[sys.__plen:]; " + "p=getattr(sys,'__egginsert',0); sys.path[p:p]=new; sys.__egginsert = p+len(new)\n") + + + def activate(self, ext_pkg, **args): + args.update(ignore=self.python_ignore(ext_pkg, args)) + super(Python, self).activate(ext_pkg, **args) + + exts = spack.install_layout.extension_map(self.spec) + exts[ext_pkg.name] = ext_pkg.spec + self.write_easy_install_pth(exts) + + + def deactivate(self, ext_pkg, **args): + args.update(ignore=self.python_ignore(ext_pkg, args)) + super(Python, self).deactivate(ext_pkg, **args) + + exts = spack.install_layout.extension_map(self.spec) + if ext_pkg.name in exts: # Make deactivate idempotent. + del exts[ext_pkg.name] + self.write_easy_install_pth(exts) diff --git a/var/spack/packages/qhull/package.py b/var/spack/packages/qhull/package.py new file mode 100644 index 0000000000..9da4078a70 --- /dev/null +++ b/var/spack/packages/qhull/package.py @@ -0,0 +1,27 @@ +from spack import * + +class Qhull(Package): + """Qhull computes the convex hull, Delaunay triangulation, Voronoi + diagram, halfspace intersection about a point, furt hest-site + Delaunay triangulation, and furthest-site Voronoi diagram. The + source code runs in 2-d, 3-d, 4-d, and higher dimensions. Qhull + implements the Quickhull algorithm for computing the convex + hull. It handles roundoff errors from floating point + arithmetic. It computes volumes, surface areas, and + approximations to the convex hull. + + Qhull does not support triangulation of non-convex surfaces, + mesh generation of non-convex objects, medium-sized inputs in + 9-D and higher, alpha shapes, weighted Voronoi diagrams, + Voronoi volumes, or constrained Delaunay triangulations.""" + + homepage = "http://www.qhull.org" + + version('1.0', 'd0f978c0d8dfb2e919caefa56ea2953c', + url="http://www.qhull.org/download/qhull-2012.1-src.tgz") + + def install(self, spec, prefix): + with working_dir('spack-build', create=True): + cmake('..', *std_cmake_args) + make() + make("install") diff --git a/var/spack/packages/qt/package.py b/var/spack/packages/qt/package.py new file mode 100644 index 0000000000..4a9a867511 --- /dev/null +++ b/var/spack/packages/qt/package.py @@ -0,0 +1,107 @@ +import os +from spack import * +import os + +class Qt(Package): + """Qt is a comprehensive cross-platform C++ application framework.""" + homepage = "http://qt.io" + list_url = 'http://download.qt-project.org/official_releases/qt/' + list_depth = 2 + + version('5.4.0', 'e8654e4b37dd98039ba20da7a53877e6', + url='http://download.qt-project.org/official_releases/qt/5.4/5.4.0/single/qt-everywhere-opensource-src-5.4.0.tar.gz') + version('5.3.2', 'febb001129927a70174467ecb508a682', + url='http://download.qt.io/archive/qt/5.3/5.3.2/single/qt-everywhere-opensource-src-5.3.2.tar.gz') + + version('5.2.1', 'a78408c887c04c34ce615da690e0b4c8', + url='http://download.qt.io/archive/qt/5.2/5.2.1/single/qt-everywhere-opensource-src-5.2.1.tar.gz') + version('4.8.6', '2edbe4d6c2eff33ef91732602f3518eb', + url="http://download.qt-project.org/official_releases/qt/4.8/4.8.6/qt-everywhere-opensource-src-4.8.6.tar.gz") + + # Use system openssl for security. + #depends_on("openssl") + + depends_on("glib") + depends_on("gtkplus") + depends_on("libxml2") + depends_on("zlib") + depends_on("dbus") + depends_on("libtiff") + depends_on("libpng") + depends_on("libmng") + depends_on("jpeg") + + # Webkit + # depends_on("gperf") + # depends_on("flex") + # depends_on("bison") + # depends_on("ruby") + # depends_on("icu4c") + + # OpenGL hardware acceleration + depends_on("mesa") + depends_on("libxcb") + + + def setup_dependent_environment(self, module, spec, dep_spec): + """Dependencies of Qt find it using the QTDIR environment variable.""" + os.environ['QTDIR'] = self.prefix + + + def patch(self): + if self.spec.satisfies('@4'): + qmake_conf = 'mkspecs/common/g++-base.conf' + elif self.spec.satisfies('@5'): + qmake_conf = 'qtbase/mkspecs/common/g++-base.conf' + else: + return + + # Fix qmake compilers in the default mkspec + filter_file(r'^QMAKE_COMPILER *=.*$', 'QMAKE_COMPILER = cc', qmake_conf) + filter_file(r'^QMAKE_CC *=.*$', 'QMAKE_CC = cc', qmake_conf) + filter_file(r'^QMAKE_CXX *=.*$', 'QMAKE_CXX = c++', qmake_conf) + + + + @property + def common_config_args(self): + return [ + '-prefix', self.prefix, + '-v', + '-opensource', + '-opengl', + "-release", + '-shared', + '-confirm-license', + '-openssl-linked', + '-dbus-linked', + '-optimized-qmake', + '-no-openvg', + '-no-pch', + # NIS is deprecated in more recent glibc + "-no-nis"] + # Don't disable all the database drivers, but should + # really get them into spack at some point. + + + @when('@4') + def configure(self): + configure('-fast', + '-no-webkit', + *self.common_config_args) + + + @when('@5') + def configure(self): + configure('-no-eglfs', + '-no-directfb', + '-qt-xcb', + # If someone wants to get a webkit build working, be my guest! + '-skip', 'qtwebkit', + *self.common_config_args) + + + def install(self, spec, prefix): + self.configure() + make() + make("install") diff --git a/var/spack/packages/qthreads/package.py b/var/spack/packages/qthreads/package.py new file mode 100644 index 0000000000..dacdb71524 --- /dev/null +++ b/var/spack/packages/qthreads/package.py @@ -0,0 +1,22 @@ +from spack import * + +class Qthreads(Package): + """The qthreads API is designed to make using large numbers of + threads convenient and easy, and to allow portable access to + threading constructs used in massively parallel shared memory + environments. The API maps well to both MTA-style threading and + PIM-style threading, and we provide an implementation of this + interface in both a standard SMP context as well as the SST + context. The qthreads API provides access to full/empty-bit + (FEB) semantics, where every word of memory can be marked + either full or empty, and a thread can wait for any word to + attain either state.""" + homepage = "http://www.cs.sandia.gov/qthreads/" + url = "https://qthreads.googlecode.com/files/qthread-1.10.tar.bz2" + + version('1.10', '5af8c8bbe88c2a6d45361643780d1671') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/readline/package.py b/var/spack/packages/readline/package.py new file mode 100644 index 0000000000..1b870e0e7f --- /dev/null +++ b/var/spack/packages/readline/package.py @@ -0,0 +1,21 @@ +from spack import * + +class Readline(Package): + """The GNU Readline library provides a set of functions for use by + applications that allow users to edit command li nes as they + are typed in. Both Emacs and vi editing modes are + available. The Readline library includes additional functions + to maintain a list of previously-entered command lines, to + recall and perhaps reedit those lines, and perform csh-like + history expansion on previous commands. """ + homepage = "http://cnswww.cns.cwru.edu/php/chet/readline/rltop.html" + url = "ftp://ftp.cwru.edu/pub/bash/readline-6.3.tar.gz" + + version('6.3', '33c8fb279e981274f485fd91da77e94a') + + depends_on("ncurses") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make("SHLIB_LIBS=-lncurses") + make("install") diff --git a/var/spack/packages/rose/add_spack_compiler_recognition.patch b/var/spack/packages/rose/add_spack_compiler_recognition.patch new file mode 100644 index 0000000000..ce61ae4e4c --- /dev/null +++ b/var/spack/packages/rose/add_spack_compiler_recognition.patch @@ -0,0 +1,13 @@ +diff --git a/config/compiler-defs.m4 b/config/compiler-defs.m4 +index d7d85d2..780c8de 100644 +--- a/config/compiler-defs.m4 ++++ b/config/compiler-defs.m4 +@@ -28,7 +28,7 @@ dnl predefined by a specific compiler + # g++|gcc|mpicc|mpic++|mpicxx|mpiCC) + # TOO (2/16/2011): added support for tensilica compilers, assuming they are + # like GCC (they use a GCC front-end) +- g++*|gcc*|mpicc|mpic++|mpicxx|mpiCC|xt-xc++|xt-xcc) ++ cc*|c++*|g++*|gcc*|mpicc|mpic++|mpicxx|mpiCC|xt-xc++|xt-xcc) + BACKEND_GCC_MAJOR=`echo|$BACKEND_CXX_COMPILER -dumpversion | cut -d\. -f1` + BACKEND_GCC_MINOR=`echo|$BACKEND_CXX_COMPILER -dumpversion | cut -d\. -f2` + BACKEND_GCC_PATCHLEVEL=`echo|$BACKEND_CXX_COMPILER -dumpversion | cut -d\. -f3` diff --git a/var/spack/packages/rose/package.py b/var/spack/packages/rose/package.py new file mode 100644 index 0000000000..1d7294acab --- /dev/null +++ b/var/spack/packages/rose/package.py @@ -0,0 +1,39 @@ +#------------------------------------------------------------------------------ +# Author: Justin Too <too1@llnl.gov> +#------------------------------------------------------------------------------ + +from spack import * + +class Rose(Package): + """A compiler infrastructure to build source-to-source program + transformation and analysis tools. + (Developed at Lawrence Livermore National Lab)""" + + homepage = "http://rosecompiler.org/" + url = "https://github.com/rose-compiler/edg4x-rose" + + version('master', branch='master', git='https://github.com/rose-compiler/edg4x-rose.git') + + patch('add_spack_compiler_recognition.patch') + + depends_on("autoconf@2.69") + depends_on("automake@1.14") + depends_on("libtool@2.4") + depends_on("boost@1.54.0") + depends_on("jdk@8u25-linux-x64") + + def install(self, spec, prefix): + # Bootstrap with autotools + bash = which('bash') + bash('build') + + # Configure, compile & install + with working_dir('rose-build', create=True): + boost = spec['boost'] + + configure = Executable('../configure') + configure("--prefix=" + prefix, + "--with-boost=" + boost.prefix, + "--disable-boost-version-check") + make("install-core") + diff --git a/var/spack/packages/ruby/package.py b/var/spack/packages/ruby/package.py new file mode 100644 index 0000000000..718fd0a3be --- /dev/null +++ b/var/spack/packages/ruby/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Ruby(Package): + """A dynamic, open source programming language with a focus on + simplicity and productivity.""" + + homepage = "https://www.ruby-lang.org/" + url = "http://cache.ruby-lang.org/pub/ruby/2.2/ruby-2.2.0.tar.gz" + + version('2.2.0', 'cd03b28fd0b555970f5c4fd481700852') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/scr/package.py b/var/spack/packages/scr/package.py index d456ecaba0..74b75a8742 100644 --- a/var/spack/packages/scr/package.py +++ b/var/spack/packages/scr/package.py @@ -28,7 +28,7 @@ class Scr(Package): """SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint/restart capability for MPI codes""" - homepage = "https://computation-rnd.llnl.gov/scr" + homepage = "https://computation.llnl.gov/project/scr/" url = "http://downloads.sourceforge.net/project/scalablecr/releases/scr-1.1-7.tar.gz" depends_on("mpi") diff --git a/var/spack/packages/spindle/package.py b/var/spack/packages/spindle/package.py index fd59282ebb..06a1e14284 100644 --- a/var/spack/packages/spindle/package.py +++ b/var/spack/packages/spindle/package.py @@ -30,7 +30,7 @@ class Spindle(Package): overload on a shared file system when loading dynamically linked libraries, causing site-wide performance problems. """ - homepage = "https://computation-rnd.llnl.gov/spindle" + homepage = "https://computation.llnl.gov/project/spindle/" url = "https://github.com/hpc/Spindle/archive/v0.8.1.tar.gz" list_url = "https://github.com/hpc/Spindle/releases" diff --git a/var/spack/packages/tcl/package.py b/var/spack/packages/tcl/package.py new file mode 100644 index 0000000000..529adf7788 --- /dev/null +++ b/var/spack/packages/tcl/package.py @@ -0,0 +1,22 @@ +from spack import * + +class Tcl(Package): + """Tcl (Tool Command Language) is a very powerful but easy to + learn dynamic programming language, suitable for a very wide + range of uses, including web and desktop applications, + networking, administration, testing and many more. Open source + and business-friendly, Tcl is a mature yet evolving language + that is truly cross platform, easily deployed and highly + extensible.""" + homepage = "http://www.tcl.tk" + + version('8.6.3', 'db382feca91754b7f93da16dc4cdad1f', + url="http://prdownloads.sourceforge.net/tcl/tcl8.6.3-src.tar.gz") + + depends_on('zlib') + + def install(self, spec, prefix): + with working_dir('unix'): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/tk/package.py b/var/spack/packages/tk/package.py new file mode 100644 index 0000000000..96736f6f95 --- /dev/null +++ b/var/spack/packages/tk/package.py @@ -0,0 +1,22 @@ +from spack import * + +class Tk(Package): + """Tk is a graphical user interface toolkit that takes developing + desktop applications to a higher level than conventional + approaches. Tk is the standard GUI not only for Tcl, but for + many other dynamic languages, and can produce rich, native + applications that run unchanged across Windows, Mac OS X, Linux + and more.""" + homepage = "http://www.tcl.tk" + url = "http://prdownloads.sourceforge.net/tcl/tk8.6.3-src.tar.gz" + + version('src', '85ca4dbf4dcc19777fd456f6ee5d0221') + + depends_on("tcl") + + def install(self, spec, prefix): + with working_dir('unix'): + configure("--prefix=%s" % prefix, + "--with-tcl=%s" % spec['tcl'].prefix.lib) + make() + make("install") diff --git a/var/spack/packages/util-linux/package.py b/var/spack/packages/util-linux/package.py new file mode 100644 index 0000000000..cb7ceabf57 --- /dev/null +++ b/var/spack/packages/util-linux/package.py @@ -0,0 +1,20 @@ +from spack import * +import os + +class UtilLinux(Package): + """Util-linux is a suite of essential utilities for any Linux system.""" + + homepage = "http://freecode.com/projects/util-linux" + url = "https://www.kernel.org/pub/linux/utils/util-linux/v2.25/util-linux-2.25.tar.gz" + + version('2.25', 'f6d7fc6952ec69c4dc62c8d7c59c1d57') + + depends_on("python@2.7:") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "PKG_CONFIG_PATH=%s/pkgconfig" % spec['python'].prefix.lib, + "--disable-use-tty-group") + + make() + make("install") diff --git a/var/spack/packages/vtk/package.py b/var/spack/packages/vtk/package.py new file mode 100644 index 0000000000..4a27a8fedb --- /dev/null +++ b/var/spack/packages/vtk/package.py @@ -0,0 +1,40 @@ +from spack import * + +class Vtk(Package): + """The Visualization Toolkit (VTK) is an open-source, freely + available software system for 3D computer graphics, image + processing and visualization. """ + homepage = "http://www.vtk.org" + url = "http://www.vtk.org/files/release/6.1/VTK-6.1.0.tar.gz" + + version('6.1.0', '25e4dfb3bad778722dcaec80cd5dab7d') + + depends_on("qt") + + def install(self, spec, prefix): + with working_dir('spack-build', create=True): + cmake_args = [ + "..", + "-DBUILD_SHARED_LIBS=ON", + # Disable wrappers for other languages. + "-DVTK_WRAP_PYTHON=OFF", + "-DVTK_WRAP_JAVA=OFF", + "-DVTK_WRAP_TCL=OFF"] + cmake_args.extend(std_cmake_args) + + # Enable Qt support here. + cmake_args.extend([ + "-DQT_QMAKE_EXECUTABLE:PATH=%s/qmake" % spec['qt'].prefix.bin, + "-DVTK_Group_Qt:BOOL=ON", + # Ignore webkit because it's hard to build w/Qt + "-DVTK_Group_Qt=OFF", + "-DModule_vtkGUISupportQt:BOOL=ON", + "-DModule_vtkGUISupportQtOpenGL:BOOL=ON" + ]) + + if spec['qt'].satisfies('@5'): + cmake_args.append("-DVTK_QT_VERSION:STRING=5") + + cmake(*cmake_args) + make() + make("install") diff --git a/var/spack/packages/wget/package.py b/var/spack/packages/wget/package.py new file mode 100644 index 0000000000..c8fd025122 --- /dev/null +++ b/var/spack/packages/wget/package.py @@ -0,0 +1,21 @@ +from spack import * + +class Wget(Package): + """GNU Wget is a free software package for retrieving files using + HTTP, HTTPS and FTP, the most widely-used Internet protocols. It + is a non-interactive commandline tool, so it may easily be called + from scripts, cron jobs, terminals without X-Windows support, + etc.""" + + homepage = "http://www.gnu.org/software/wget/" + url = "http://ftp.gnu.org/gnu/wget/wget-1.16.tar.xz" + + version('1.16', 'fe102975ab3a6c049777883f1bb9ad07') + + depends_on("openssl") + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix, + "--with-ssl=openssl") + make() + make("install") diff --git a/var/spack/packages/xcb-proto/package.py b/var/spack/packages/xcb-proto/package.py new file mode 100644 index 0000000000..17a94bd892 --- /dev/null +++ b/var/spack/packages/xcb-proto/package.py @@ -0,0 +1,15 @@ +from spack import * + +class XcbProto(Package): + """Protocol for libxcb""" + + homepage = "http://xcb.freedesktop.org/" + url = "http://xcb.freedesktop.org/dist/xcb-proto-1.11.tar.gz" + + version('1.11', 'c8c6cb72c84f58270f4db1f39607f66a') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + + make() + make("install") diff --git a/var/spack/packages/xz/package.py b/var/spack/packages/xz/package.py new file mode 100644 index 0000000000..88c5793018 --- /dev/null +++ b/var/spack/packages/xz/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Xz(Package): + """XZ Utils is free general-purpose data compression software with + high compression ratio. XZ Utils were written for POSIX-like + systems, but also work on some not-so-POSIX systems. XZ Utils are + the successor to LZMA Utils.""" + homepage = "http://tukaani.org/xz/" + url = "http://tukaani.org/xz/xz-5.2.0.tar.bz2" + + version('5.2.0', '867cc8611760240ebf3440bd6e170bb9') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") diff --git a/var/spack/packages/yasm/package.py b/var/spack/packages/yasm/package.py new file mode 100644 index 0000000000..d3a695b16d --- /dev/null +++ b/var/spack/packages/yasm/package.py @@ -0,0 +1,16 @@ +from spack import * + +class Yasm(Package): + """Yasm is a complete rewrite of the NASM-2.11.06 assembler. It + supports the x86 and AMD64 instruction sets, accepts NASM and + GAS assembler syntaxes and outputs binary, ELF32 and ELF64 + object formats.""" + homepage = "http://yasm.tortall.net" + url = "http://www.tortall.net/projects/yasm/releases/yasm-1.3.0.tar.gz" + + version('1.3.0', 'fc9e586751ff789b34b1f21d572d96af') + + def install(self, spec, prefix): + configure("--prefix=%s" % prefix) + make() + make("install") |