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| author | Desmond Orton <odesmond21@gmail.com> | 2021-09-03 16:04:24 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-09-03 14:04:24 -0700 |
| commit | 0aedafda19f533661e92ede1e5435b42e01a1c81 (patch) | |
| tree | ecc2380857eab7e79073e74cbaa8382f384097fb /var | |
| parent | ac3ccad1e24ef8df8a179336d38c68eb11dd32ba (diff) | |
| download | spack-0aedafda19f533661e92ede1e5435b42e01a1c81.tar.gz spack-0aedafda19f533661e92ede1e5435b42e01a1c81.tar.bz2 spack-0aedafda19f533661e92ede1e5435b42e01a1c81.tar.xz spack-0aedafda19f533661e92ede1e5435b42e01a1c81.zip | |
New package: getOrganelle@1.7.5.0 (#25725)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-getorganelle/package.py | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-getorganelle/package.py b/var/spack/repos/builtin/packages/py-getorganelle/package.py new file mode 100644 index 0000000000..b65ad0efa5 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-getorganelle/package.py @@ -0,0 +1,33 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyGetorganelle(PythonPackage): + """Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)""" + + homepage = "https://github.com/Kinggerm/GetOrganelle" + url = "https://github.com/Kinggerm/GetOrganelle/archive/refs/tags/1.7.5.0.tar.gz" + + maintainers = ['dorton21'] + + version('1.7.5.0', sha256='c498196737726cb4c0158f23037bf301a069f5028ece729bb4d09c7d915df93d') + + depends_on('py-setuptools', type='build') + depends_on('py-numpy@1.16.4:', type=('build', 'run')) + depends_on('py-scipy@1.3.0:', type=('build', 'run')) + depends_on('py-sympy@1.4:', type=('build', 'run')) + depends_on('py-requests', type=('build', 'run')) + + depends_on('bowtie2', type='run') + depends_on('spades', type='run') + depends_on('blast-plus', type='run') + + # Allow access to relevant runtime scripts + # I.e. get_organelle_config.py, get_organelle_from_reads.py, etc. + def setup_run_environment(self, env): + env.prepend_path('PATH', prefix) + env.prepend_path('PATH', prefix.Utilities) |