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| author | George Young <A-N-Other@users.noreply.github.com> | 2023-06-15 20:53:32 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-06-15 12:53:32 -0700 |
| commit | 1577eb96022e8db57465cdac27125f639a504c57 (patch) | |
| tree | f12ee038b540fd045154e202ca73fe9bd137a421 /var | |
| parent | 2f97c6ead2b13390e162d535e47adb9ba87efea2 (diff) | |
| download | spack-1577eb96022e8db57465cdac27125f639a504c57.tar.gz spack-1577eb96022e8db57465cdac27125f639a504c57.tar.bz2 spack-1577eb96022e8db57465cdac27125f639a504c57.tar.xz spack-1577eb96022e8db57465cdac27125f639a504c57.zip | |
star: add 2.7.10 (#38197)
* star: add 2.7.10
* star: fix building for non-avx2 arch processors
* convert to MakefilePackage, second take at fixing for aarch64
* style
---------
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/star/package.py | 19 |
1 files changed, 15 insertions, 4 deletions
diff --git a/var/spack/repos/builtin/packages/star/package.py b/var/spack/repos/builtin/packages/star/package.py index 8c05e1d209..492e4a710f 100644 --- a/var/spack/repos/builtin/packages/star/package.py +++ b/var/spack/repos/builtin/packages/star/package.py @@ -6,12 +6,14 @@ from spack.package import * -class Star(Package): +class Star(MakefilePackage): """STAR is an ultrafast universal RNA-seq aligner.""" homepage = "https://github.com/alexdobin/STAR" url = "https://github.com/alexdobin/STAR/archive/2.7.6a.tar.gz" + version("2.7.10b", sha256="0d1b71de6c5be1c5d90b32130d2abcd5785a4fc7c1e9bf19cc391947f2dc46e5") + version("2.7.10a", sha256="af0df8fdc0e7a539b3ec6665dce9ac55c33598dfbc74d24df9dae7a309b0426a") version("2.7.6a", sha256="9320797c604673debea0fe8f2e3762db364915cc59755de1a0d87c8018f97d51") version("2.7.0e", sha256="2fc9d9103bd02811904d41e3a3d50e47c7de17cb55c3b4880ea5f39300a9ba0d") version("2.7.0d", sha256="7a757478868dc73fe7619bf6ea302dd642bd30e1c8c1fb4acdbe7fa151cf9fd1") @@ -33,9 +35,18 @@ class Star(Package): depends_on("zlib") - def install(self, spec, prefix): - with working_dir("source"): + build_directory = "source" + + def edit(self, spec, prefix): + if "avx2" not in spec.target: + env["CXXFLAGS_SIMD"] = "" + + def build(self, spec, prefix): + with working_dir(self.build_directory): make("STAR", "STARlong") - mkdirp(prefix.bin) + + def install(self, spec, prefix): + mkdirp(prefix.bin) + with working_dir(self.build_directory): install("STAR", prefix.bin) install("STARlong", prefix.bin) |