new package: r-signac (#31703)

Also includes new package depdendency for r-rcpproll.

2 files changed, 69 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-rcpproll/package.py b/var/spack/repos/builtin/packages/r-rcpproll/package.py
new file mode 100644
index 0000000000..f234262250
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-rcpproll/package.py
@@ -0,0 +1,22 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class RRcpproll(RPackage):
+    """Efficient Rolling / Windowed Operations.
+
+    Provides fast and efficient routines for common rolling / windowed
+    operations. Routines for the efficient computation of windowed mean,
+    median, sum, product, minimum, maximum, standard deviation and variance are
+    provided."""
+
+    cran = "RcppRoll"
+
+    version('0.3.0', sha256='cbff2096443a8a38a6f1dabf8c90b9e14a43d2196b412b5bfe5390393f743f6b')
+
+    depends_on('r@2.15.1:', type=('build', 'run'))
+    depends_on('r-rcpp', type=('build', 'run'))
diff --git a/var/spack/repos/builtin/packages/r-signac/package.py b/var/spack/repos/builtin/packages/r-signac/package.py
new file mode 100644
index 0000000000..c77fa05632
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-signac/package.py
@@ -0,0 +1,47 @@
+# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class RSignac(RPackage):
+    """Analysis of Single-Cell Chromatin Data.
+
+    A framework for the analysis and exploration of single-cell chromatin data.
+    The 'Signac' package contains functions for quantifying single-cell
+    chromatin data, computing per-cell quality control metrics, dimension
+    reduction and normalization, visualization, and DNA sequence motif
+    analysis. Reference: Stuart et al. (2021)
+    <doi:10.1038/s41592-021-01282-5>."""
+
+    cran = "Signac"
+
+    version('1.7.0', sha256='5e4456eeab29fa2df7f6236b050dec8cb9c073d7652a89ee5030a27f94e5e4bf')
+
+    depends_on('r@4.0.0:', type=('build', 'run'))
+    depends_on('r-genomeinfodb@1.29.3:', type=('build', 'run'))
+    depends_on('r-genomicranges', type=('build', 'run'))
+    depends_on('r-iranges', type=('build', 'run'))
+    depends_on('r-matrix', type=('build', 'run'))
+    depends_on('r-rsamtools', type=('build', 'run'))
+    depends_on('r-s4vectors', type=('build', 'run'))
+    depends_on('r-seuratobject@4.0.0:', type=('build', 'run'))
+    depends_on('r-data-table', type=('build', 'run'))
+    depends_on('r-dplyr@1.0.0:', type=('build', 'run'))
+    depends_on('r-future', type=('build', 'run'))
+    depends_on('r-future-apply', type=('build', 'run'))
+    depends_on('r-ggplot2', type=('build', 'run'))
+    depends_on('r-irlba', type=('build', 'run'))
+    depends_on('r-pbapply', type=('build', 'run'))
+    depends_on('r-tidyr', type=('build', 'run'))
+    depends_on('r-patchwork', type=('build', 'run'))
+    depends_on('r-biocgenerics', type=('build', 'run'))
+    depends_on('r-stringi', type=('build', 'run'))
+    depends_on('r-fastmatch', type=('build', 'run'))
+    depends_on('r-rcpproll', type=('build', 'run'))
+    depends_on('r-scales', type=('build', 'run'))
+    depends_on('r-rcpp', type=('build', 'run'))
+    depends_on('r-tidyselect', type=('build', 'run'))
+    depends_on('r-vctrs', type=('build', 'run'))