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| author | Gavin John <gavinnjohn@gmail.com> | 2023-12-06 09:04:17 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-12-06 09:04:17 -0600 |
| commit | 1da0d0342bef7e86e7cb49e2e2fc809d30e0e632 (patch) | |
| tree | e74afbe8382f7bdaa12aad26ff0fb1e858537244 /var | |
| parent | 6f7d91aebf4e3b1e769bf8687e9f892148e725f3 (diff) | |
| download | spack-1da0d0342bef7e86e7cb49e2e2fc809d30e0e632.tar.gz spack-1da0d0342bef7e86e7cb49e2e2fc809d30e0e632.tar.bz2 spack-1da0d0342bef7e86e7cb49e2e2fc809d30e0e632.tar.xz spack-1da0d0342bef7e86e7cb49e2e2fc809d30e0e632.zip | |
Add new versions of py-quast (#40788)
* Add new versions of py-quast
* Update hashes
* Add joblib and simplejson
* Fat finger
* Update dependency type
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-quast/package.py | 18 |
1 files changed, 12 insertions, 6 deletions
diff --git a/var/spack/repos/builtin/packages/py-quast/package.py b/var/spack/repos/builtin/packages/py-quast/package.py index 7ba99767b6..a574185b0b 100644 --- a/var/spack/repos/builtin/packages/py-quast/package.py +++ b/var/spack/repos/builtin/packages/py-quast/package.py @@ -11,11 +11,15 @@ class PyQuast(PythonPackage): """Quality Assessment Tool for Genome Assemblies""" homepage = "https://cab.spbu.ru/software/quast" - url = "https://github.com/ablab/quast/archive/quast_4.6.1.tar.gz" + pypi = "quast/quast-5.2.0.tar.gz" - version("4.6.3", sha256="d7f5e670563d17d683f6df057086f7b816b6a088266c6270f7114a1406aaab63") - version("4.6.1", sha256="a8071188545710e5c0806eac612daaabde9f730819df2c44be3ffa9317b76a58") - version("4.6.0", sha256="6bee86654b457a981718a19acacffca6a3e74f30997ad06162a70fd2a181ca2e") + version("5.2.0", sha256="23649fbd93253c6da982c0b67d719f9262461deecdc6dffbd690b75dfd790ad7") + version("5.0.2", sha256="cdb8f83e20cc38f218ff7172b454280fcb1c7e2dff74e1f8618cacc53d46b48e") + version("5.0.1", sha256="b1e4443b6598b01faaefddfc0f06fb270414ed4bdaffd0ad9aa420bc0d07d8ad") + version("5.0.0", sha256="46bba247c7f92c2ccaca8c0abeab2a8d40a257a0cbe2fa0a4ffa981ca0267526") + version("4.6.3", sha256="f9267e5deadf20cfe67731a42e775e7ef1d0850927a2a76c4b3d49bc77b1fab5") + version("4.6.1", sha256="7ace5bebebe9d2a70ad45e5339f998bd651c1c6b9025f7a3b51f44c87ea5bae0") + version("4.6.0", sha256="3a7ee7a2abfeb0541b299b67f263ba95f9743f8809ddf5dfaca9c3c8f9b6a215") depends_on("boost@1.56.0") @@ -23,10 +27,12 @@ class PyQuast(PythonPackage): # for instance depends_on('boost +filesystem') # See https://github.com/spack/spack/pull/22303 for reference depends_on(Boost.with_default_variants) - depends_on("perl@5.6.0:") - depends_on("python@2.5:,3.3:") + depends_on("perl@5.6.0:", type=("build", "run")) + depends_on("python@2.5:,3.3:", type=("build", "run")) depends_on("py-setuptools", type="build") depends_on("py-matplotlib", type=("build", "run")) + depends_on("py-joblib", type=("build", "run")) + depends_on("py-simplejson", type=("build", "run")) depends_on("java", type=("build", "run")) depends_on("perl-time-hires", type=("build", "run")) depends_on("gnuplot", type=("build", "run")) |