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authorJoseph Ciurej <ciurej1@llnl.gov>2016-11-29 14:18:03 -0800
committerTodd Gamblin <tgamblin@llnl.gov>2016-11-29 16:18:03 -0600
commit3d439d89465ecaa229c6beef37c0f597f0ed6b8d (patch)
tree7b019e17fbfc3131177e4b9f30cee19b5f6f16b8 /var
parentc3e34b480a6402b5f08c94aa0e206b75c37fcff4 (diff)
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Added the '+debug' and '+except' variants to the 'tetgen' package. (#2370)
Fixed a bug that was causing memory errors after asserts in 'tetgen@1.5.0'.
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/tetgen/package.py34
-rw-r--r--var/spack/repos/builtin/packages/tetgen/tetgen-1.5.0-free.patch49
2 files changed, 78 insertions, 5 deletions
diff --git a/var/spack/repos/builtin/packages/tetgen/package.py b/var/spack/repos/builtin/packages/tetgen/package.py
index 7ac55a6785..6e5ed79c36 100644
--- a/var/spack/repos/builtin/packages/tetgen/package.py
+++ b/var/spack/repos/builtin/packages/tetgen/package.py
@@ -22,7 +22,9 @@
# License along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
+
from spack import *
+import glob
class Tetgen(Package):
@@ -33,13 +35,35 @@ class Tetgen(Package):
"""
homepage = "http://www.tetgen.org"
- url = "http://www.tetgen.org/files/tetgen1.4.3.tar.gz"
- version('1.4.3', 'd6a4bcdde2ac804f7ec66c29dcb63c18')
- version('1.5.0', '3b9fd9cdec121e52527b0308f7aad5c1',
- url='http://www.tetgen.org/1.5/src/tetgen1.5.0.tar.gz')
+ version('1.5.0', '3b9fd9cdec121e52527b0308f7aad5c1', url='http://www.tetgen.org/1.5/src/tetgen1.5.0.tar.gz')
+ version('1.4.3', 'd6a4bcdde2ac804f7ec66c29dcb63c18', url='http://www.tetgen.org/files/tetgen1.4.3.tar.gz')
+
+ variant('debug', default=False, description='Builds the library in debug mode.')
+ variant('except', default=False, description='Replaces asserts with exceptions for better C++ compatibility.')
+
+ patch('tetgen-1.5.0-free.patch', when='@1.5.0')
+
+ def patch(self):
+ cflags = '-g -O0' if '+debug' in self.spec else '-g0 -O3'
+
+ mff = FileFilter('makefile')
+ mff.filter(r'^(C(XX)?FLAGS\s*=)(.*)$', r'\1 {0}'.format(cflags))
+
+ if '+except' in self.spec:
+ hff = FileFilter('tetgen.h')
+ hff.filter(r'(\b)(throw)(\b)(.*);', r'\1assert_throw(false);')
+ hff.filter(r'^(#define\s*tetgenH\s*)$', r'\1{0}'.format("""\n
+#include <stdexcept>
+
+inline void assert_throw(bool assertion)
+{
+ if(!assertion)
+ throw std::runtime_error("Tetgen encountered a problem (assert failed)!");
+}\n"""))
- depends_on('cmake@2.8.7:', when='@1.5.0:', type='build')
+ sff = FileFilter(*(glob.glob('*.cxx')))
+ sff.filter(r'(\b)(assert)(\b)', r'\1assert_throw\3')
def install(self, spec, prefix):
make('tetgen', 'tetlib')
diff --git a/var/spack/repos/builtin/packages/tetgen/tetgen-1.5.0-free.patch b/var/spack/repos/builtin/packages/tetgen/tetgen-1.5.0-free.patch
new file mode 100644
index 0000000000..009ccd834f
--- /dev/null
+++ b/var/spack/repos/builtin/packages/tetgen/tetgen-1.5.0-free.patch
@@ -0,0 +1,49 @@
+diff --git a/tetgen.h b/tetgen.h
+index 3196e03..2ff3138 100644
+--- a/tetgen.h
++++ b/tetgen.h
+@@ -2206,6 +2206,44 @@ public:
+ if (highordertable != NULL) {
+ delete [] highordertable;
+ }
++
++ bgm = NULL;
++
++ points = NULL;
++ dummypoint = NULL;
++
++ tetrahedrons = NULL;
++
++ subfaces = NULL;
++ subsegs = NULL;
++
++ tet2segpool = NULL;
++ tet2subpool = NULL;
++
++ flippool = NULL;
++ unflipqueue = NULL;
++
++ cavetetlist = NULL;
++ cavebdrylist = NULL;
++ caveoldtetlist = NULL;
++ cavetetvertlist = NULL;
++
++ caveshlist = NULL;
++ caveshbdlist = NULL;
++ cavesegshlist = NULL;
++ cavetetshlist = NULL;
++ cavetetseglist = NULL;
++ caveencshlist = NULL;
++ caveencseglist = NULL;
++
++ subsegstack = NULL;
++ subfacstack = NULL;
++ subvertstack = NULL;
++
++ idx2facetlist = NULL;
++ facetverticeslist = NULL;
++ segmentendpointslist = NULL;
++ highordertable = NULL;
+ }
+
+ ~tetgenmesh()