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| author | Erin Newcomer <95434668+erinpnewcomer@users.noreply.github.com> | 2022-07-07 16:06:55 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2022-07-07 14:06:55 -0700 |
| commit | 44b48cfe46d05c1bd5fd2ceb51b8884089cb4fe3 (patch) | |
| tree | da36d6b7dfbc19b1e89c3d2b5a2ef0c6edc07304 /var | |
| parent | a12ce9fd59c32e650b43610925e454322995a81d (diff) | |
| download | spack-44b48cfe46d05c1bd5fd2ceb51b8884089cb4fe3.tar.gz spack-44b48cfe46d05c1bd5fd2ceb51b8884089cb4fe3.tar.bz2 spack-44b48cfe46d05c1bd5fd2ceb51b8884089cb4fe3.tar.xz spack-44b48cfe46d05c1bd5fd2ceb51b8884089cb4fe3.zip | |
Package/py phylophlan (#31422)
* py-phylophlan: new package
* py-phyloseq: new package
* py-phylophlan: style fix
* py-phylophlan: fixed dependencies
* py-phylophlan: style fix
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-phylophlan/package.py | 27 |
1 files changed, 27 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-phylophlan/package.py b/var/spack/repos/builtin/packages/py-phylophlan/package.py new file mode 100644 index 0000000000..1a8698cd50 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-phylophlan/package.py @@ -0,0 +1,27 @@ +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class PyPhylophlan(PythonPackage): + """PhyloPhlAn 3.0 is an integrated pipeline for large-scale + phylogenetic profiling of genomes and metagenomes.""" + + homepage = "https://github.com/biobakery/phylophlan" + url = "https://github.com/biobakery/phylophlan/archive/refs/tags/3.0.2.tar.gz" + + version('3.0.2', sha256='c342116662bbfbb49f0665291fc7c0be5a0d04a02a7be2da81de0322eb2256b4') + + depends_on('python@3:', type=('build', 'run')) + depends_on('py-numpy@1.12.1:', type=('build', 'run')) + depends_on('py-biopython@1.70:', type=('build', 'run')) + depends_on('py-dendropy@4.2.0:', type=('build', 'run')) + depends_on('muscle', type=('build', 'run')) + depends_on('blast-plus', type=('build', 'run')) + depends_on('diamond', type=('build', 'run')) + depends_on('py-matplotlib', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-seaborn', type=('build', 'run')) |