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| author | ilbiondo <61497728+ilbiondo@users.noreply.github.com> | 2020-11-05 18:02:43 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-11-05 11:02:43 -0600 |
| commit | 4c254c6c9f67a43247c0be5c3da256e057c958d8 (patch) | |
| tree | 01ece71b77bd5b3161fb61050f00e888eadf3377 /var | |
| parent | 08e825f47433972ddcdb35f1187d41be91f6318a (diff) | |
| download | spack-4c254c6c9f67a43247c0be5c3da256e057c958d8.tar.gz spack-4c254c6c9f67a43247c0be5c3da256e057c958d8.tar.bz2 spack-4c254c6c9f67a43247c0be5c3da256e057c958d8.tar.xz spack-4c254c6c9f67a43247c0be5c3da256e057c958d8.zip | |
bamaddrg package (#19729)
* bamaddrg package
* Change version to URL rather than git
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/bamaddrg/package.py | 24 |
1 files changed, 24 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/bamaddrg/package.py b/var/spack/repos/builtin/packages/bamaddrg/package.py new file mode 100644 index 0000000000..c828d048aa --- /dev/null +++ b/var/spack/repos/builtin/packages/bamaddrg/package.py @@ -0,0 +1,24 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Bamaddrg(MakefilePackage): + """bamaddrg adds read groups to input BAM files, + streams BAM output on stdout""" + + homepage = "https://github.com/ekg/bamaddrg" + url = "https://github.com/ilbiondo/bamaddrg/archive/v0.1.tar.gz" + git = "https://github.com/ilbiondo/bamaddrg.git" + + version('0.1', sha256='725a689d8326d72f865837b231005a9211d6c70a25b7a3a754df4f90d2996355') + + depends_on("bamtools", type="build") + + def setup_build_environment(self, env): + + env.set('BAMTOOLS_ROOT', self.spec['bamtools'].prefix) + env.set('PREFIX', self.prefix) |