py-libsonata: new package starting at 0.1.25 (#43372)

* py-libsonata: new package starting at 0.1.25
* align spack version with the git branch
* Fix min required versions / use spack packages instead of submodules

1 files changed, 34 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-libsonata/package.py b/var/spack/repos/builtin/packages/py-libsonata/package.py
new file mode 100644
index 0000000000..d8ef9b9b83
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-libsonata/package.py
@@ -0,0 +1,34 @@
+# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack.package import *
+
+
+class PyLibsonata(PythonPackage):
+    """SONATA files reader"""
+
+    homepage = "https://github.com/BlueBrain/libsonata"
+    git = "https://github.com/BlueBrain/libsonata.git"
+    pypi = "libsonata/libsonata-0.1.14.tar.gz"
+
+    maintainers("tristan0x")
+
+    version("master", branch="master")
+    version("0.1.25", sha256="b332efa718123ee265263e1583a5998eaa945a13b8a22903873764cf1d8173fa")
+
+    depends_on("catch2@2.13:", type="test")
+    depends_on("cmake@3.16:", type="build")
+    depends_on("fmt@7.1:")
+    depends_on("hdf5@1.14:")
+    depends_on("highfive@2.9:")
+    depends_on("nlohmann-json@3.9.1")
+    depends_on("py-pybind11@2.11.1:")
+
+    depends_on("py-numpy@1.17.3:", type=("build", "run"))
+    depends_on("py-setuptools@42:", type="build", when="@0.1:")
+    depends_on("py-setuptools-scm@3.4:", type="build", when="@0.1:")
+
+    def patch(self):
+        filter_file("-DEXTLIB_FROM_SUBMODULES=ON", "-DEXTLIB_FROM_SUBMODULES=OFF", "setup.py")