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| author | Justin Stanley <molecuul@users.noreply.github.com> | 2018-12-07 19:39:07 -0600 |
|---|---|---|
| committer | Peter Scheibel <scheibel1@llnl.gov> | 2018-12-07 17:39:07 -0800 |
| commit | 4d5b13627058f6c6c8474aeef62813b1ba22d0e1 (patch) | |
| tree | 20da369303429a1e82803e2fe38e24ce17325ebe /var | |
| parent | 76ab54caec803e55034b531401e277dfd51ffe80 (diff) | |
| download | spack-4d5b13627058f6c6c8474aeef62813b1ba22d0e1.tar.gz spack-4d5b13627058f6c6c8474aeef62813b1ba22d0e1.tar.bz2 spack-4d5b13627058f6c6c8474aeef62813b1ba22d0e1.tar.xz spack-4d5b13627058f6c6c8474aeef62813b1ba22d0e1.zip | |
scallop: new package at 0.10.3 (#10041)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/scallop/package.py | 26 |
1 files changed, 26 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/scallop/package.py b/var/spack/repos/builtin/packages/scallop/package.py new file mode 100644 index 0000000000..d02c51fc86 --- /dev/null +++ b/var/spack/repos/builtin/packages/scallop/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class Scallop(AutotoolsPackage): + """Scallop is a reference-based transcriptome assembler for RNA-seq""" + + homepage = "https://github.com/Kingsford-Group/scallop" + url = "https://github.com/Kingsford-Group/scallop/releases/download/v0.10.3/scallop-0.10.3.tar.gz" + + version('0.10.3', sha256='04eb3ab27ed8c7ae38e1780d6b2af16b6a2c01807ffafd59e819d33bfeff58a0') + + depends_on('clp') + depends_on('boost') + depends_on('htslib@1.5:') + + def configure_args(self): + return [ + '--with-clp={0}'.format(self.spec['clp'].prefix), + '--with-htslib={0}'.format(self.spec['htslib'].prefix), + '--with-boost={0}'.format(self.spec['boost'].prefix), + ] |