Add mpi support to R (#4286)

2 files changed, 93 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-rmpi/package.py b/var/spack/repos/builtin/packages/r-rmpi/package.py
new file mode 100644
index 0000000000..7b955545d8
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-rmpi/package.py
@@ -0,0 +1,55 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RRmpi(RPackage):
+    """An interface (wrapper) to MPI APIs. It also provides interactive R
+       manager and worker environment."""
+
+    homepage = "http://www.stats.uwo.ca/faculty/yu/Rmpi"
+    url      = "https://cran.r-project.org/src/contrib/Rmpi_0.6-6.tar.gz"
+    list_url = "https://cran.r-project.org/src/contrib/Archive/Rmpi"
+
+    version('0.6-6', '59ae8ce62ff0ff99342d53942c745779')
+
+    depends_on('mpi')
+    depends_on('r@2.15.1:')
+
+    def install(self, spec, prefix):
+        if 'mpich' in spec:
+            Rmpi_type = 'MPICH'
+        elif 'mvapich' in spec:
+            Rmpi_type = 'MVAPICH'
+        else:
+            Rmpi_type = 'OPENMPI'
+
+        my_mpi = spec['mpi']
+
+        R('CMD', 'INSTALL',
+          '--configure-args=--with-Rmpi-type=%s' % Rmpi_type +
+          ' --with-mpi=%s' % my_mpi.prefix,
+          '--library={0}'.format(self.module.r_lib_dir),
+          self.stage.source_path)
diff --git a/var/spack/repos/builtin/packages/r-snow/package.py b/var/spack/repos/builtin/packages/r-snow/package.py
new file mode 100644
index 0000000000..662cdd80a7
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-snow/package.py
@@ -0,0 +1,38 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the LICENSE file for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RSnow(RPackage):
+    """Support for simple parallel computing in R."""
+
+    homepage = "https://cran.r-project.org/web/packages/snow/index.html"
+    url      = "https://cran.r-project.org/src/contrib/snow_0.4-2.tar.gz"
+    list_url = "https://cran.r-project.org/src/contrib/Archive/snow"
+
+    version('0.4-2', 'afc7b0dfd4518aedb6fc81712fd2ac70')
+
+    depends_on('r-rmpi', type='run')
+    depends_on('r@2.13.1:', type=('build', 'run'))