diff options
| author | Justin S <3630356+codeandkey@users.noreply.github.com> | 2020-12-02 13:20:27 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2020-12-02 20:20:27 +0100 |
| commit | 651bd50d8660d3ede7704bbb70fc96d6248de10d (patch) | |
| tree | f75d781cc5a5271a80b54535065d60d2d25627d5 /var | |
| parent | c65090bac1e80b310278f7a799769c2cea71c525 (diff) | |
| download | spack-651bd50d8660d3ede7704bbb70fc96d6248de10d.tar.gz spack-651bd50d8660d3ede7704bbb70fc96d6248de10d.tar.bz2 spack-651bd50d8660d3ede7704bbb70fc96d6248de10d.tar.xz spack-651bd50d8660d3ede7704bbb70fc96d6248de10d.zip | |
py-mikado: new package at 20201016 (#20186)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-mikado/package.py | 45 |
1 files changed, 45 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-mikado/package.py b/var/spack/repos/builtin/packages/py-mikado/package.py new file mode 100644 index 0000000000..fd248a8f05 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-mikado/package.py @@ -0,0 +1,45 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyMikado(PythonPackage): + """Mikado is a lightweight Python3 pipeline whose purpose is to facilitate + the identification of expressed loci from RNA-Seq data * and to select + the best models in each locus.""" + + homepage = "https://github.com/EI-CoreBioinformatics/mikado" + git = "git://github.com/EI-CoreBioinformatics/mikado" + + version('20201016', commit='2501ba995d85e62e47165fe72592666a4c79f61a') + + depends_on('python@3:', type=('build', 'run')) + depends_on('py-setuptools', type='build') + depends_on('py-cython', type='build') + depends_on('py-wheel@0.28.0:', type=('build', 'run')) + depends_on('py-pyyaml', type=('build', 'run')) + depends_on('py-jsonschema@3.0.1:', type=('build', 'run')) + depends_on('py-numpy@1.16.0:', type=('build', 'run')) + depends_on('py-networkx@2:', type=('build', 'run')) + depends_on('py-sqlalchemy@1.3:', type=('build', 'run')) + depends_on('py-sqlalchemy-utils', type=('build', 'run')) + depends_on('py-biopython@1.78:', type=('build', 'run')) + depends_on('py-intervaltree', type=('build', 'run')) + depends_on('py-pytest', type=('build', 'run')) + depends_on('py-pyfaidx', type=('build', 'run')) + depends_on('py-scikit-learn@0.17.0:', type=('build', 'run')) + depends_on('py-scipy@1.0.0:', type=('build', 'run')) + depends_on('py-drmaa', type=('build', 'run')) + depends_on('snakemake', type=('build', 'run')) + depends_on('py-docutils@0.13.2:', type=('build', 'run')) + depends_on('py-tabulate', type=('build', 'run')) + depends_on('py-msgpack@1.0.0:', type=('build', 'run')) + depends_on('py-python-rapidjson@0.8:', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-jsonref', type=('build', 'run')) + depends_on('py-pysam@0.15.3:', type=('build', 'run')) + depends_on('py-toml', type=('build', 'run')) + depends_on('py-tomlkit', type=('build', 'run')) |