diff options
| author | Audrey Thoma <las_thoma15@iastate.edu> | 2017-08-09 17:00:59 -0500 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2017-08-09 17:00:59 -0500 |
| commit | 7ca5e4f7347999cbee33428761d173fe1fdfb145 (patch) | |
| tree | 14436290ea08f9d3fe1b4ed064d9bf38aa1ea59f /var | |
| parent | 28b0421eb13ddc40033b54b63f1dfa2966257384 (diff) | |
| download | spack-7ca5e4f7347999cbee33428761d173fe1fdfb145.tar.gz spack-7ca5e4f7347999cbee33428761d173fe1fdfb145.tar.bz2 spack-7ca5e4f7347999cbee33428761d173fe1fdfb145.tar.xz spack-7ca5e4f7347999cbee33428761d173fe1fdfb145.zip | |
soapsnp: new package (#5046)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/soapsnp/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/soapsnp/package.py b/var/spack/repos/builtin/packages/soapsnp/package.py new file mode 100644 index 0000000000..3d22a579bf --- /dev/null +++ b/var/spack/repos/builtin/packages/soapsnp/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class Soapsnp(MakefilePackage): + """SOAPsnp uses a method based on Bayes' theorem (the reverse probability + model) to call consensus genotype by carefully considering the data + quality, alignment, and recurring experimental errors.""" + + homepage = "http://soap.genomics.org.cn/soapsnp.html" + url = "http://soap.genomics.org.cn/down/SOAPsnp-v1.03.tar.gz" + + version('1.03', '8d69e196013657357ff840b611762ebc') + + depends_on('boost') + + def install(self, spec, prefix): + mkdirp(prefix.bin) + install('soapsnp', prefix.bin) |