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| author | George Young <A-N-Other@users.noreply.github.com> | 2023-07-05 13:36:55 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-07-05 14:36:55 +0200 |
| commit | 8861fe029426649c15f273575e5d7e260c2febc6 (patch) | |
| tree | 1ab36e7274b556bcf84214d55ff6005e213494b6 /var | |
| parent | 12427c6974c644ca6c45ffd62207dbec32625e79 (diff) | |
| download | spack-8861fe029426649c15f273575e5d7e260c2febc6.tar.gz spack-8861fe029426649c15f273575e5d7e260c2febc6.tar.bz2 spack-8861fe029426649c15f273575e5d7e260c2febc6.tar.xz spack-8861fe029426649c15f273575e5d7e260c2febc6.zip | |
salmon: patching to build with %gcc@13: (#38553)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/salmon/package.py | 9 |
1 files changed, 9 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/salmon/package.py b/var/spack/repos/builtin/packages/salmon/package.py index fbc9224640..553a2d1767 100644 --- a/var/spack/repos/builtin/packages/salmon/package.py +++ b/var/spack/repos/builtin/packages/salmon/package.py @@ -85,6 +85,15 @@ class Salmon(CMakePackage): when="@{0}".format(ver), ) + # `%gcc13:` requires `<cstdint>` to be manually included. Fixed upstream, + # so we patch to allow building of previous salmon versions + patch( + "https://github.com/COMBINE-lab/salmon/commit/ffb2a11.patch?full_index=1", + sha256="5ed3512bae665c1d72002911ab9ee6d213f10df63019ebd9e8e0ecde03823a73", + when="@:1.10.1%gcc@13:", + level=1, + ) + def patch(self): # remove static linking to libstdc++ filter_file("-static-libstdc++", "", "CMakeLists.txt", string=True) |