diff options
| author | Desmond Orton <odesmond21@gmail.com> | 2021-01-06 01:54:36 -0600 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2021-01-06 08:54:36 +0100 |
| commit | 8d0f5c0a6f17b55c5b43653b8126343fc00066e3 (patch) | |
| tree | 77308224a3848db9adf121e45768ca8c7c5855a3 /var | |
| parent | 7dbc4d32db439063eba4859facbc4b4b759cf50c (diff) | |
| download | spack-8d0f5c0a6f17b55c5b43653b8126343fc00066e3.tar.gz spack-8d0f5c0a6f17b55c5b43653b8126343fc00066e3.tar.bz2 spack-8d0f5c0a6f17b55c5b43653b8126343fc00066e3.tar.xz spack-8d0f5c0a6f17b55c5b43653b8126343fc00066e3.zip | |
py-picrust2: added new package (#20455)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-biom-format/package.py | 21 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/py-picrust2/package.py | 26 |
2 files changed, 38 insertions, 9 deletions
diff --git a/var/spack/repos/builtin/packages/py-biom-format/package.py b/var/spack/repos/builtin/packages/py-biom-format/package.py index ce62c7a05b..a298bff954 100644 --- a/var/spack/repos/builtin/packages/py-biom-format/package.py +++ b/var/spack/repos/builtin/packages/py-biom-format/package.py @@ -13,17 +13,20 @@ class PyBiomFormat(PythonPackage): pypi = "biom-format/biom-format-2.1.6.tar.gz" + version('2.1.10', sha256='f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488') + version('2.1.9', sha256='18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491') + version('2.1.7', sha256='b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4') version('2.1.6', sha256='8eefc275a85cc937f6d6f408d91b7b45eae854cd5d1cbda411a3af51f5b49b0d') - variant('h5py', default=True, description='For use with BIOM 2.0+ files') - + depends_on('python@2.7:', type=('build', 'run')) + depends_on('python@3:', type=('build', 'run'), when='@2.1.9:') depends_on('py-setuptools', type=('build', 'run')) - depends_on('py-cython', type='build') - depends_on('py-h5py', type=('build', 'run'), when='+h5py') - depends_on('py-click', type=('build', 'run')) - depends_on('py-numpy@1.3.0:', type=('build', 'run')) + depends_on('py-cython@0.29:', type='build') + depends_on('py-h5py', type=('build', 'run')) + depends_on('py-click', type=('build', 'run'), when='@2.1.5:') + depends_on('py-numpy@1.9.2:', type=('build', 'run')) depends_on('py-future@0.16.0:', type=('build', 'run')) - depends_on('py-scipy@0.13.0:', type=('build', 'run')) - depends_on('py-pandas@0.19.2:', type=('build', 'run')) + depends_on('py-scipy@1.3.1:', type=('build', 'run')) + depends_on('py-pandas@0.20.0:', type=('build', 'run')) depends_on('py-six@1.10.0:', type=('build', 'run')) - depends_on('py-pyqi', type=('build', 'run')) + depends_on('py-pyqi', type=('build', 'run'), when='^python@:2') diff --git a/var/spack/repos/builtin/packages/py-picrust2/package.py b/var/spack/repos/builtin/packages/py-picrust2/package.py new file mode 100644 index 0000000000..fb897bc257 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-picrust2/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyPicrust2(PythonPackage): + """PICRUSt2 is a software for predicting functional + abundances based only on marker gene sequences.""" + + homepage = "https://github.com/picrust/picrust2" + url = "https://github.com/picrust/picrust2/archive/v2.3.0-b.tar.gz" + + maintainers = ['dorton21'] + + version('2.3.0-b', sha256='ac12c372bc263e750d9101eca0cd0e57de37089b661fa1a13caf5a544d293737') + version('2.2.0-b', sha256='c41e1f487b33179f4aecede50cfd8b652aa3cef2ea1ae5fd022f531c7d549097') + version('2.1.4-b', sha256='f781eb323914979b6d3bca088a5152f085f53e6e38f1c3be94b35f99fc1db2d8') + + depends_on('py-setuptools', type=('build')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('py-h5py', type=('build', 'run')) + depends_on('py-joblib', type=('build', 'run')) + depends_on('py-biom-format', type=('build', 'run')) |