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| author | Justin Stanley <molecuul@users.noreply.github.com> | 2018-12-22 12:09:20 -0600 |
|---|---|---|
| committer | Massimiliano Culpo <massimiliano.culpo@gmail.com> | 2018-12-22 19:09:20 +0100 |
| commit | 90dce26db9cd12506fd7d3ec6147e5490b338719 (patch) | |
| tree | 00ff2ccc84ac01e7db01dece334624c868811ee0 /var | |
| parent | fad4ecc90bf3c1369b01b3d22bf0bd7d018e2083 (diff) | |
| download | spack-90dce26db9cd12506fd7d3ec6147e5490b338719.tar.gz spack-90dce26db9cd12506fd7d3ec6147e5490b338719.tar.bz2 spack-90dce26db9cd12506fd7d3ec6147e5490b338719.tar.xz spack-90dce26db9cd12506fd7d3ec6147e5490b338719.zip | |
r-corhmm: new package at 1.22 (#9859)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-corhmm/package.py | 31 |
1 files changed, 31 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-corhmm/package.py b/var/spack/repos/builtin/packages/r-corhmm/package.py new file mode 100644 index 0000000000..e59264d11d --- /dev/null +++ b/var/spack/repos/builtin/packages/r-corhmm/package.py @@ -0,0 +1,31 @@ +# Copyright 2013-2018 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class RCorhmm(RPackage): + """corHMM: Analysis of Binary Character Evolution + + Fits a hidden rates model that allows different transition rate classes + on different portions of a phylogeny by treating rate classes as hidden + states in a Markov process and various other functions for evaluating + models of binary character evolution.""" + + homepage = "https://cran.r-project.org/package=corHMM" + url = "https://cran.r-project.org/src/contrib/corHMM_1.22.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/corHMM/" + + version('1.22', sha256='d262fa1183eab32087afb70f1789fabae6fb49bec01d627974c54a088a48b10d') + + depends_on('r-ape', type=('build', 'run')) + depends_on('r-nloptr', type=('build', 'run')) + depends_on('r-gensa', type=('build', 'run')) + depends_on('r-expm', type=('build', 'run')) + depends_on('r-numderiv', type=('build', 'run')) + depends_on('r-nnet', type=('build', 'run')) + depends_on('r-corpcor', type=('build', 'run')) + depends_on('r-phangorn', type=('build', 'run')) + depends_on('r-rmpfr', type=('build', 'run')) |