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| author | snehring <7978778+snehring@users.noreply.github.com> | 2023-06-05 13:45:15 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-06-05 11:45:15 -0700 |
| commit | 9bfa840c27bcca7b7ebc62c6ceb26b6274827728 (patch) | |
| tree | 53646158d69886891e4d9f58358914b58157619d /var | |
| parent | 9865f423359155851cc9d3567a087c677fd9993e (diff) | |
| download | spack-9bfa840c27bcca7b7ebc62c6ceb26b6274827728.tar.gz spack-9bfa840c27bcca7b7ebc62c6ceb26b6274827728.tar.bz2 spack-9bfa840c27bcca7b7ebc62c6ceb26b6274827728.tar.xz spack-9bfa840c27bcca7b7ebc62c6ceb26b6274827728.zip | |
ncbi-rmblastn: adding new version 2.14.0 (#38173)
* ncbi-rmblastn: adding new version 2.14.0
* ncbi-rmblastn: add maintainer
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/ncbi-rmblastn/package.py | 14 |
1 files changed, 13 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/ncbi-rmblastn/package.py b/var/spack/repos/builtin/packages/ncbi-rmblastn/package.py index 1dfd26ed79..c18f556540 100644 --- a/var/spack/repos/builtin/packages/ncbi-rmblastn/package.py +++ b/var/spack/repos/builtin/packages/ncbi-rmblastn/package.py @@ -9,12 +9,15 @@ from spack.package import * class NcbiRmblastn(AutotoolsPackage): """RMBlast search engine for NCBI""" - homepage = "https://www.repeatmasker.org/RMBlast.html" + homepage = "https://www.repeatmasker.org/rmblast/" url = "ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.9.0/ncbi-blast-2.9.0+-src.tar.gz" + version("2.14.0", sha256="bf477f1b0c3b82f0b7a7094bf003a9a83e37e3b0716c1df799060c4feab17500") version("2.11.0", sha256="d88e1858ae7ce553545a795a2120e657a799a6d334f2a07ef0330cc3e74e1954") version("2.9.0", sha256="a390cc2d7a09422759fc178db84de9def822cbe485916bbb2ec0d215dacdc257") + maintainers("snehring") + # There is a corresponding gzipped patch file associated with each version. # According to the documentation, https://www.repeatmasker.org/RMBlast.html, # Download NCBI Blast+ and rmblast patch file: @@ -23,6 +26,12 @@ class NcbiRmblastn(AutotoolsPackage): # The patch is downloaded and unzipped in the ncbi-rmblastn Spack package # directory to make it available for the patch directive. patch( + "http://www.repeatmasker.org/rmblast/isb-2.14.0+-rmblast.patch.gz", + sha256="cd083f256551c6d6021897a1b08e023976e82c59576787d4885f57d36f9e6fdf", + archive_sha256="9de0e67467a4cffdde0c5f67e3658fb52ed313e4550f9a36a251bddb2ba33f49", + when="@2.14.0", + ) + patch( "https://www.repeatmasker.org/isb-2.11.0+-rmblast.patch.gz", sha256="ce985abd3512834adb9ad3e4078fbf9608a33a2ee6538a1e94b641490c92f899", archive_sha256="0fc27781c2ea2f17645247e2f3775b5d18c56f0b62761a865347be745ea4f6be", @@ -37,6 +46,9 @@ class NcbiRmblastn(AutotoolsPackage): depends_on("cpio", type="build") depends_on("boost") depends_on("lzo") + depends_on("bzip2") + depends_on("zstd") + depends_on("xz") configure_directory = "c++" |