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| author | George Young <A-N-Other@users.noreply.github.com> | 2023-06-08 20:55:03 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-06-08 15:55:03 -0400 |
| commit | a97bd31afe4cbf848e9f6f58917dfd05ebb2d147 (patch) | |
| tree | 3d3422d018ecbeb0ddfca87fab2a9c115b35b2a0 /var | |
| parent | d7719b26f98180fcb1e58e3b3dc0dd8ea624eb19 (diff) | |
| download | spack-a97bd31afe4cbf848e9f6f58917dfd05ebb2d147.tar.gz spack-a97bd31afe4cbf848e9f6f58917dfd05ebb2d147.tar.bz2 spack-a97bd31afe4cbf848e9f6f58917dfd05ebb2d147.tar.xz spack-a97bd31afe4cbf848e9f6f58917dfd05ebb2d147.zip | |
trimgalore: add 0.6.10, adding variants (#38206)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/trimgalore/package.py | 8 |
1 files changed, 8 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/trimgalore/package.py b/var/spack/repos/builtin/packages/trimgalore/package.py index 0e689efea3..bc05c4fcbb 100644 --- a/var/spack/repos/builtin/packages/trimgalore/package.py +++ b/var/spack/repos/builtin/packages/trimgalore/package.py @@ -14,6 +14,7 @@ class Trimgalore(Package): homepage = "https://github.com/FelixKrueger/TrimGalore" url = "https://github.com/FelixKrueger/TrimGalore/archive/0.4.4.tar.gz" + version("0.6.10", sha256="3a4e414fc658d6eb4356f1572351204e8475a9d7dc79f6798270b57d35bda017") version("0.6.9", sha256="d50ce6106f979c316c89c7e7bcb44e5f841935d88bc4f756ccf0bc4cbab4e6f5") version("0.6.6", sha256="b8db8ffd131d9d9e7c8532a5a1f1caee656c0c58d3eafd460fee3c39b9fcab5e") version("0.6.4", sha256="eb57e18203d8a1dce1397b930a348a9969eebaa758b8a7304d04c22f216cea2d") @@ -24,9 +25,16 @@ class Trimgalore(Package): version("0.4.5", sha256="a6b97e554944ddc6ecd50e78df486521f17225d415aad84e9911163faafe1f3c") version("0.4.4", sha256="485a1357e08eadeb5862bbb796022a25a6ace642c4bc13bbaf453b7dc7cff8e2") + variant("pigz", default=False, description="Use pigz for compression", when="@0.6.0:") + variant("igzip", default=False, description="Use igzip for compression", when="@0.6.8:") + + # general dependencies depends_on("perl", type=("build", "run")) depends_on("py-cutadapt", type=("build", "run")) depends_on("fastqc") + # variant dependencies + depends_on("pigz", type="run", when="+pigz") + depends_on("libisal", type="run", when="+igzip") def install(self, spec, prefix): filter_file(r"#!/usr/bin/perl", "#!/usr/bin/env perl", "trim_galore") |