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| author | snehring <snehring@users.noreply.github.com> | 2018-10-15 14:43:02 -0500 |
|---|---|---|
| committer | Peter Scheibel <scheibel1@llnl.gov> | 2018-10-15 12:43:02 -0700 |
| commit | ac68ed8fa8319d2792eefaf81f8d8a8ae230ea1c (patch) | |
| tree | aa26b7a386021a2667a0d973174782c65e49cdac /var | |
| parent | 13c83b8ca4d843989dcbcc69df01b0bb1f9d525c (diff) | |
| download | spack-ac68ed8fa8319d2792eefaf81f8d8a8ae230ea1c.tar.gz spack-ac68ed8fa8319d2792eefaf81f8d8a8ae230ea1c.tar.bz2 spack-ac68ed8fa8319d2792eefaf81f8d8a8ae230ea1c.tar.xz spack-ac68ed8fa8319d2792eefaf81f8d8a8ae230ea1c.zip | |
redundans: replace incorrect hard-coded path for sspace-standard (#9483)
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/redundans/package.py | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/redundans/package.py b/var/spack/repos/builtin/packages/redundans/package.py index ea3bea2c17..2364ce082b 100644 --- a/var/spack/repos/builtin/packages/redundans/package.py +++ b/var/spack/repos/builtin/packages/redundans/package.py @@ -46,7 +46,12 @@ class Redundans(Package): depends_on('snap-berkeley@1.0beta.18:', type=('build', 'run')) def install(self, spec, prefix): + sspace_location = join_path(spec['sspace-standard'].prefix, + 'SSPACE_Standard_v3.0.pl') mkdirp(prefix.bin) + filter_file(r'sspacebin = os.path.join(.*)$', + 'sspacebin = \'' + sspace_location + '\'', + 'redundans.py') install('redundans.py', prefix.bin) with working_dir('bin'): install('fasta2homozygous.py', prefix.bin) |