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| author | Hector Martinez-Seara <hseara@gmail.com> | 2019-11-26 17:42:39 +0100 |
|---|---|---|
| committer | Adam J. Stewart <ajstewart426@gmail.com> | 2019-11-26 10:42:39 -0600 |
| commit | ad2cc38f220323e48ca1ba6c0c675bd871abe202 (patch) | |
| tree | e14ca6492a197e830eb10f4a58ad1ced2319c71f /var | |
| parent | 7d3d03dea99cace26ac7440227edf341167c3bed (diff) | |
| download | spack-ad2cc38f220323e48ca1ba6c0c675bd871abe202.tar.gz spack-ad2cc38f220323e48ca1ba6c0c675bd871abe202.tar.bz2 spack-ad2cc38f220323e48ca1ba6c0c675bd871abe202.tar.xz spack-ad2cc38f220323e48ca1ba6c0c675bd871abe202.zip | |
Py-pymol package has been updated to the latest version (#13764)
* Added new package libmmtf-cpp required by py-pymol
* Added SPDX-License-Identifier to MIT
* Updated py-pymol to version 2.3.0
* py-pymol: Added mising py-pmw dependency
* py-pymol: flake8 minor change
* py-pymol: Added patch for apbstools_tcltk8.6
This patch is borrowed from archlinux
https://bugs.archlinux.org/task/39526
* libmmtf-cpp: flake8 compliance
* libmmtf-cpp: flake8 compliance
* libmmtf-cpp: change license to (Apache-2.0 OR MIT) when refering to the MIT license
* libmmtf-cpp: Added header text about license as in examples
* py-pymol: removed unnecesary dependency mesa-glu
* py-pymol: removed unnecesary patch
* py-pymol: Removed empty line at the end of the file to comply with flake8.
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/libmmtf-cpp/package.py | 19 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/py-pymol/package.py | 25 |
2 files changed, 31 insertions, 13 deletions
diff --git a/var/spack/repos/builtin/packages/libmmtf-cpp/package.py b/var/spack/repos/builtin/packages/libmmtf-cpp/package.py new file mode 100644 index 0000000000..039f1489ae --- /dev/null +++ b/var/spack/repos/builtin/packages/libmmtf-cpp/package.py @@ -0,0 +1,19 @@ +# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class LibmmtfCpp(CMakePackage): + """The macromolecular transmission format (MMTF) is a binary encoding of + biological structures. This repository holds the C++-03 compatible API, + encoding and decoding libraries.""" + + homepage = "https://github.com/rcsb/mmtf-cpp" + url = "https://github.com/rcsb/mmtf-cpp/archive/v1.0.0.tar.gz" + + version('1.0.0', sha256='881f69c4bb56605fa63fd5ca50842facc4947f686cbf678ad04930674d714f40') + + depends_on('msgpack-c') diff --git a/var/spack/repos/builtin/packages/py-pymol/package.py b/var/spack/repos/builtin/packages/py-pymol/package.py index c85f380d24..53d9d6c712 100644 --- a/var/spack/repos/builtin/packages/py-pymol/package.py +++ b/var/spack/repos/builtin/packages/py-pymol/package.py @@ -13,20 +13,19 @@ class PyPymol(PythonPackage): movies. Open Source PyMOL is free to everyone!""" homepage = "https://pymol.org" - url = "https://sourceforge.net/projects/pymol/files/pymol/2/pymol-v2.1.0.tar.bz2" + url = "https://github.com/schrodinger/pymol-open-source/archive/v2.3.0.tar.gz" - version('2.1.0', sha256='7ae8ebb899533d691a67c1ec731b00518dea456ab3e258aa052a65c24b63eae2') + version('2.3.0', sha256='62aa21fafd1db805c876f89466e47513809f8198395e1f00a5f5cc40d6f40ed0') depends_on('python+tkinter', type=('build', 'run')) - depends_on('tcl') - depends_on('tk') - depends_on('py-pmw') - depends_on('gl') - depends_on('glu') + depends_on('freetype', type=('build', 'run')) depends_on('glew') - depends_on('libpng') - depends_on('freetype') - depends_on('libxml2') - depends_on('msgpack-c') - depends_on('py-pyqt4', type=('build', 'run')) - depends_on('freeglut') + depends_on('glm') + depends_on('freeglut', type=('build', 'run')) + depends_on('py-numpy', type=('build', 'run')) + depends_on('tcsh', type=('build', 'run')) + depends_on('py-pyqt5', type=('build', 'run')) + depends_on('py-pmw', type=('build', 'run')) + + depends_on('libmmtf-cpp', type=('build')) + depends_on('msgpack-c', type=('build')) |