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| author | downloadico <download@carc.unm.edu> | 2023-01-23 13:13:05 -0700 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-01-23 12:13:05 -0800 |
| commit | c2d68975bcba920094347e3421b2e848cbac46db (patch) | |
| tree | 931ef855a61b66f350e31bcdd5f5f14141e39e4c /var | |
| parent | b9e196e40c18c2776c088534208452617ab7479b (diff) | |
| download | spack-c2d68975bcba920094347e3421b2e848cbac46db.tar.gz spack-c2d68975bcba920094347e3421b2e848cbac46db.tar.bz2 spack-c2d68975bcba920094347e3421b2e848cbac46db.tar.xz spack-c2d68975bcba920094347e3421b2e848cbac46db.zip | |
update Samtools, bcftools, and htslib versions (#35043)
* samtools: add version 1.6.1
* htslib: update version to 1.6
* bcftools: update version to 1.6
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/bcftools/package.py | 3 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/htslib/package.py | 3 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/samtools/package.py | 3 |
3 files changed, 6 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/bcftools/package.py b/var/spack/repos/builtin/packages/bcftools/package.py index 563ff457a7..a74a54a733 100644 --- a/var/spack/repos/builtin/packages/bcftools/package.py +++ b/var/spack/repos/builtin/packages/bcftools/package.py @@ -1,4 +1,4 @@ -# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) @@ -16,6 +16,7 @@ class Bcftools(AutotoolsPackage): homepage = "https://samtools.github.io/bcftools/" url = "https://github.com/samtools/bcftools/releases/download/1.3.1/bcftools-1.3.1.tar.bz2" + version("1.16", sha256="293010736b076cf684d2873928924fcc3d2c231a091084c2ac23a8045c7df982") version("1.15.1", sha256="f21f9564873eb27ccf22d13b91a64acb8fbbfe4f9e4c37933a54b9a95857f2d7") version("1.14", sha256="b7ef88ae89fcb55658c5bea2e8cb8e756b055e13860036d6be13756782aa19cb") version("1.13", sha256="13bfa1da2a5edda8fa51196a47a0b4afb3fef17516451e4f0e78477f3dd30b90") diff --git a/var/spack/repos/builtin/packages/htslib/package.py b/var/spack/repos/builtin/packages/htslib/package.py index 05e65d58df..394f3cf6ff 100644 --- a/var/spack/repos/builtin/packages/htslib/package.py +++ b/var/spack/repos/builtin/packages/htslib/package.py @@ -1,4 +1,4 @@ -# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) @@ -12,6 +12,7 @@ class Htslib(AutotoolsPackage): homepage = "https://github.com/samtools/htslib" url = "https://github.com/samtools/htslib/releases/download/1.13/htslib-1.13.tar.bz2" + version("1.16", sha256="606b7c7aff73734cf033ecd156f40529fa5792f54524952a28938ca0890d7924") version("1.15.1", sha256="8d7f8bf9658226942eeab70af2a22aca618577eaa8fe2ed9416ee306d5351aa1") version("1.15", sha256="1a9f49911503a22f56817cc82ea9b87fb7e7467b5ff989ca5aa61c12e7d532d9") version("1.14", sha256="ed221b8f52f4812f810eebe0cc56cd8355a5c9d21c62d142ac05ad0da147935f") diff --git a/var/spack/repos/builtin/packages/samtools/package.py b/var/spack/repos/builtin/packages/samtools/package.py index 0b7bcc26aa..28385976f6 100644 --- a/var/spack/repos/builtin/packages/samtools/package.py +++ b/var/spack/repos/builtin/packages/samtools/package.py @@ -1,4 +1,4 @@ -# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Copyright 2013-2022 Lawrence Livermore National Security, LLC and other # Spack Project Developers. See the top-level COPYRIGHT file for details. # # SPDX-License-Identifier: (Apache-2.0 OR MIT) @@ -41,6 +41,7 @@ class Samtools(Package): depends_on("python", type="run") # htslib became standalone @1.3.1, must use corresponding version + depends_on("htslib@1.16", when="@1.16.1") depends_on("htslib@1.15.1", when="@1.15.1") depends_on("htslib@1.15", when="@1.15") depends_on("htslib@1.14", when="@1.14") |