Feature/py picrust New Package (#9096)

* added py-picrust

* flake8 edits

* fixed boilerplate, added type='build', 'run'

* fixed errors

* added deps

* fixed error

* fixed numpy max version

* fixed future version

* fixed version issues

1 files changed, 42 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/py-picrust/package.py b/var/spack/repos/builtin/packages/py-picrust/package.py
new file mode 100644
index 0000000000..dff2e89619
--- /dev/null
+++ b/var/spack/repos/builtin/packages/py-picrust/package.py
@@ -0,0 +1,42 @@
+##############################################################################
+# Copyright (c) 2013-2018, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/spack/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class PyPicrust(PythonPackage):
+    """bioinformatics software package designed to predict metagenome
+        functional content from marker gene surveys and full genomes."""
+
+    homepage = "http://picrust.github.io/picrust/index.html"
+    url      = "https://github.com/picrust/picrust/releases/download/v1.1.3/picrust-1.1.3.tar.gz"
+
+    version('1.1.3', sha256='7538c8544899b8855deb73a2d7a4ccac4808ff294e161530a8c8762d472d8906')
+
+    depends_on('python@2.7.15:2.999', type=('build', 'run'))
+    depends_on('py-cogent@1.5.3', type=('build', 'run'))
+    depends_on('py-biom-format@2.1.4:2.1.999', type=('build', 'run'))
+    depends_on('py-setuptools', type='build')
+    depends_on('py-future@0.16.0', type=('build', 'run'))
+    depends_on('py-numpy@1.5.1:', type=('build', 'run'))