r-dada2: new package at 1.14 (#13492)

* r-dada2: new package at 1.14

* r-dada2: add gmake dependency

* Update var/spack/repos/builtin/packages/r-dada2/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

1 files changed, 29 insertions, 0 deletions

diff --git a/var/spack/repos/builtin/packages/r-dada2/package.py b/var/spack/repos/builtin/packages/r-dada2/package.py
new file mode 100644
index 0000000000..41354055fe
--- /dev/null
+++ b/var/spack/repos/builtin/packages/r-dada2/package.py
@@ -0,0 +1,29 @@
+# Copyright 2013-2019 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+from spack import *
+
+
+class RDada2(RPackage):
+    """Accurate sample inference from amplicon data with single nucleotide
+       resolution"""
+
+    homepage = "http://benjjneb.github.io/dada2/"
+    url      = "https://github.com/benjjneb/dada2/archive/v1.14.tar.gz"
+
+    version('1.14', sha256='19980b9d7b0a0e80e86010357cae11d1fc07c2d02067c4445169143cf1f99906')
+
+    depends_on('r@3.4:', type=('build', 'run'))
+    depends_on('r-rcpp@0.12.0:', type=('build', 'run'))
+    depends_on('r-biostrings@2.42.1:', type=('build', 'run'))
+    depends_on('r-ggplot2@2.1.0:', type=('build', 'run'))
+    depends_on('r-reshape2@1.4.1:', type=('build', 'run'))
+    depends_on('r-shortread@1.32.0:', type=('build', 'run'))
+    depends_on('r-rcppparallel@4.3.0:', type=('build', 'run'))
+    depends_on('r-iranges@2.6.0:', type=('build', 'run'))
+    depends_on('r-xvector@0.16.0:', type=('build', 'run'))
+    depends_on('r-biocgenerics@0.22.0:', type=('build', 'run'))
+
+    depends_on('gmake', type='build')