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| author | Gavin John <gavinnjohn@gmail.com> | 2023-10-03 09:55:15 -0500 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-10-03 09:55:15 -0500 |
| commit | e8f230199fc96e29c2651d3f632af1c01c54cbc0 (patch) | |
| tree | 031ad067f43d78a0350b21be209cfee0b46fada5 /var | |
| parent | 1e3c7abc1c3ad50b259bc0bd97b21969e1e32265 (diff) | |
| download | spack-e8f230199fc96e29c2651d3f632af1c01c54cbc0.tar.gz spack-e8f230199fc96e29c2651d3f632af1c01c54cbc0.tar.bz2 spack-e8f230199fc96e29c2651d3f632af1c01c54cbc0.tar.xz spack-e8f230199fc96e29c2651d3f632af1c01c54cbc0.zip | |
py-biom-format: Fix package file issues and bring up to date (#39962)
* Fix python versioning issue for py-biom-format
* Update deps according to feedback
* Remove version requirement for py-cython
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Only depend on py-six for versions >=2.1.10
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Add py-future as non-dependency for 2.1.15
* There we are. Everything anyone could ever want
* Missed cython version change
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
---------
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-biom-format/package.py | 28 |
1 files changed, 19 insertions, 9 deletions
diff --git a/var/spack/repos/builtin/packages/py-biom-format/package.py b/var/spack/repos/builtin/packages/py-biom-format/package.py index e96614165e..79175dbfcb 100644 --- a/var/spack/repos/builtin/packages/py-biom-format/package.py +++ b/var/spack/repos/builtin/packages/py-biom-format/package.py @@ -13,6 +13,10 @@ class PyBiomFormat(PythonPackage): pypi = "biom-format/biom-format-2.1.6.tar.gz" + version("2.1.15", sha256="3bda2096e663dc1cb6f90f51b394da0838b9be5164a44370c134ce5b3b2a4dd3") + version("2.1.14", sha256="c8bac94ab6aa8226c0d38af7a3341d65e5f3664b9f45ec44fdf8b5275b2f92c1") + version("2.1.13", sha256="c48ed8fe978adaff5832f9d65ffcf8b735298bb2175b0360251d556baac5d4dc") + version("2.1.12", sha256="a4460e803b2abfcabe76d5d8fec0f3f7e76a8cd0e09bf22bb38dea9fca224ac2") version("2.1.10", sha256="f5a277a8144f0b114606852c42f657b9cfde44b3cefa0b2638ab1c1d5e1d0488") version("2.1.9", sha256="18a6e4d4b4b2a6bf2d5544fa357ad168bedeac93f0837015ef9c72f41fa89491") version("2.1.7", sha256="b47e54282ef13cddffdb00aea9183a87175a2372c91a915259086a3f444c42f4") @@ -20,12 +24,18 @@ class PyBiomFormat(PythonPackage): depends_on("python@2.7:", type=("build", "run")) depends_on("python@3:", type=("build", "run"), when="@2.1.9:") - depends_on("py-setuptools", type=("build", "run")) - depends_on("py-cython@0.29:", type="build") - depends_on("py-h5py", type=("build", "run")) - depends_on("py-click", type=("build", "run"), when="@2.1.5:") - depends_on("py-numpy@1.9.2:", type=("build", "run")) - depends_on("py-future@0.16.0:", type=("build", "run")) - depends_on("py-scipy@1.3.1:", type=("build", "run")) - depends_on("py-pandas@0.20.0:", type=("build", "run")) - depends_on("py-six@1.10.0:", type=("build", "run")) + depends_on("py-setuptools", type="build") + depends_on("py-cython", type="build") + depends_on("py-h5py@2.2.0:", type=("build", "run")) + depends_on("py-click", type=("build", "run")) + depends_on("py-numpy@1.3.0:", type=("build", "run")) + depends_on("py-numpy@1.9.2:", type=("build", "run"), when="@2.1.7:") + depends_on("py-future@0.16.0:", type=("build", "run"), when="@:2.1.10") + depends_on("py-scipy@0.13.0:", type=("build", "run")) + depends_on("py-scipy@1.3.1:", type=("build", "run"), when="@2.1.8:") + depends_on("py-pandas@0.19.2:", type=("build", "run")) + depends_on("py-pandas@0.20.0:", type=("build", "run"), when="@2.1.7:") + depends_on("py-six@1.10.0:", type=("build", "run"), when="@:2.1.10") + + # https://github.com/biocore/biom-format/pull/865 + conflicts("^python@3.10:", when="@:2.1.10") |