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| author | George Young <A-N-Other@users.noreply.github.com> | 2023-06-08 21:01:56 +0100 |
|---|---|---|
| committer | GitHub <noreply@github.com> | 2023-06-08 16:01:56 -0400 |
| commit | e92554414b1596735d8e0d5bab60abcf5c16d892 (patch) | |
| tree | 7b6ba9a3ac12c560f2ca670a05bfba7698593731 /var | |
| parent | d165e2c94be9c2eb2f37c0a5fcb4052cb2d3c1ef (diff) | |
| download | spack-e92554414b1596735d8e0d5bab60abcf5c16d892.tar.gz spack-e92554414b1596735d8e0d5bab60abcf5c16d892.tar.bz2 spack-e92554414b1596735d8e0d5bab60abcf5c16d892.tar.xz spack-e92554414b1596735d8e0d5bab60abcf5c16d892.zip | |
gatk: add 4.4, update to java@17 (#38211)
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/gatk/package.py | 4 |
1 files changed, 3 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/gatk/package.py b/var/spack/repos/builtin/packages/gatk/package.py index ba6edd46b2..2e84107b61 100644 --- a/var/spack/repos/builtin/packages/gatk/package.py +++ b/var/spack/repos/builtin/packages/gatk/package.py @@ -19,6 +19,7 @@ class Gatk(Package): list_url = "https://github.com/broadinstitute/gatk/releases" maintainers("snehring") + version("4.4.0.0", sha256="444600f7b38b46ad0b3606b7d40ce921e0ff1910a50165872f1c73c7c4a1a390") version("4.3.0.0", sha256="e2c27229b34c3e22445964adf00639a0909887bbfcc040f6910079177bc6e2dd") version("4.2.6.1", sha256="1125cfc862301d437310506c8774d36c3a90d00d52c7b5d6b59dac7241203628") version("4.2.2.0", sha256="ddd902441d1874493796566159288e9df178714ac18216ba05092136db1497fd") @@ -61,7 +62,8 @@ class Gatk(Package): # output. variant("r", default=False, description="Use R for plotting") - depends_on("java@8:", type="run") + depends_on("java@17", type="run", when="@4.4:") + depends_on("java@8", type="run", when="@:4.3") depends_on("python@2.6:2.8,3.6:", type="run", when="@4.0:") depends_on("r@3.2:", type="run", when="@4.0: +r") |