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authorHarry Sharma <96082317+harrysharma1@users.noreply.github.com>2023-12-28 08:45:59 +0000
committerGitHub <noreply@github.com>2023-12-28 09:45:59 +0100
commiteec5dd88e05e9a8876d7b7c0e3c4e1f0cea0faf0 (patch)
tree2b4968fc3a25b7a786f024083e89031521a84d0d /var
parent582476849e7ebee15d2a273a2f26beefe3dd4174 (diff)
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vbz-compression: new package (#41714)
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/vbz-compression/package.py50
1 files changed, 50 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/vbz-compression/package.py b/var/spack/repos/builtin/packages/vbz-compression/package.py
new file mode 100644
index 0000000000..787370e6c1
--- /dev/null
+++ b/var/spack/repos/builtin/packages/vbz-compression/package.py
@@ -0,0 +1,50 @@
+# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other
+# Spack Project Developers. See the top-level COPYRIGHT file for details.
+#
+# SPDX-License-Identifier: (Apache-2.0 OR MIT)
+
+
+from spack.package import *
+
+
+class VbzCompression(CMakePackage):
+ """
+ VBZ Compression uses variable byte integer encoding to compress nanopore signal data and is built using the following libraries:
+
+ https://github.com/lemire/streamvbyte
+ https://github.com/facebook/zstd
+
+ The performance of VBZ is achieved by taking advantage of the properties of the raw signal and therefore is most effective when applied to the signal dataset.
+ Other datasets you may have in your Fast5 files will not be able to take advantage of the default VBZ settings for compression.
+ VBZ will be used as the default compression scheme in a future release of MinKNOW.
+ """
+
+ homepage = "https://nanoporetech.com"
+ git = "https://github.com/nanoporetech/vbz_compression.git"
+
+ license("MPL-2.0")
+
+ version("1.0.3", commit="02fb8f50b93921ffa3c040106e809aaf8adbe5c5", submodules=True)
+ version("1.0.2", commit="3f77a01c6a0a41707b7a5bcea959e734178b6ce2", submodules=True)
+ version("1.0.1", commit="975cbcf33640d131b5cf2d2a124eed1a702b54f7", submodules=True)
+ version("1.0.0", commit="2db0e3f62fa7a612dc42dc802401c26781eed068", submodules=True)
+ version("0.9.3", commit="9a748efcdd0754be835e1080cf7086f3451e17d1", submodules=True)
+
+ depends_on("cmake@3.11:", type="build")
+ depends_on("zstd@1.3.1:")
+ depends_on("hdf5@1.8.16:")
+
+ variant(
+ "build_type",
+ default="Release",
+ description="CMake build type",
+ values=("Release", "Default"),
+ )
+
+ def cmake_args(self):
+ args = [
+ self.define("ENABLE_CONAN", False),
+ self.define("ENABLE_PERF_TESTING", False),
+ self.define("ENABLE_PYTHON", False),
+ ]
+ return args