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authorYifan Zhu <ifanzhu@foxmail.com>2017-10-24 04:14:04 -0500
committerTodd Gamblin <tgamblin@llnl.gov>2017-10-24 11:14:04 +0200
commitf9f0c1472f96e7edc0d4a73fee2e6c9f8d6ffce1 (patch)
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parentcea33af464813046942c080dfcd5172aa1cf8b54 (diff)
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r-siggenes: new package (#5831)
* r-siggenes: created new package * deleted extra indent
Diffstat (limited to 'var')
-rw-r--r--var/spack/repos/builtin/packages/r-siggenes/package.py42
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-siggenes/package.py b/var/spack/repos/builtin/packages/r-siggenes/package.py
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+++ b/var/spack/repos/builtin/packages/r-siggenes/package.py
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+##############################################################################
+# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class RSiggenes(RPackage):
+ """Identification of differentially expressed genes and estimation of the
+ False Discovery Rate (FDR) using both the Significance Analysis of
+ Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays
+ (EBAM)."""
+
+ homepage = "http://bioconductor.org/packages/siggenes/"
+ url = "https://git.bioconductor.org/packages/siggenes"
+ list_url = homepage
+
+ version('1.50.0', git='https://git.bioconductor.org/packages/siggenes', commit='b1818f26e1449005ffd971df6bda8da0303080bc')
+
+ depends_on('r-biobase', type=('build', 'run'))
+ depends_on('r-multtest', type=('build', 'run'))
+ depends_on('r@3.4.0:3.4.9', when='@1.50.0')