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author | Yifan Zhu <ifanzhu@foxmail.com> | 2017-10-24 04:14:04 -0500 |
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committer | Todd Gamblin <tgamblin@llnl.gov> | 2017-10-24 11:14:04 +0200 |
commit | f9f0c1472f96e7edc0d4a73fee2e6c9f8d6ffce1 (patch) | |
tree | 977b1bbd6d399dd6f247adcb4c6bbbf3ac86bb45 /var | |
parent | cea33af464813046942c080dfcd5172aa1cf8b54 (diff) | |
download | spack-f9f0c1472f96e7edc0d4a73fee2e6c9f8d6ffce1.tar.gz spack-f9f0c1472f96e7edc0d4a73fee2e6c9f8d6ffce1.tar.bz2 spack-f9f0c1472f96e7edc0d4a73fee2e6c9f8d6ffce1.tar.xz spack-f9f0c1472f96e7edc0d4a73fee2e6c9f8d6ffce1.zip |
r-siggenes: new package (#5831)
* r-siggenes: created new package
* deleted extra indent
Diffstat (limited to 'var')
-rw-r--r-- | var/spack/repos/builtin/packages/r-siggenes/package.py | 42 |
1 files changed, 42 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-siggenes/package.py b/var/spack/repos/builtin/packages/r-siggenes/package.py new file mode 100644 index 0000000000..41468da957 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-siggenes/package.py @@ -0,0 +1,42 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RSiggenes(RPackage): + """Identification of differentially expressed genes and estimation of the + False Discovery Rate (FDR) using both the Significance Analysis of + Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays + (EBAM).""" + + homepage = "http://bioconductor.org/packages/siggenes/" + url = "https://git.bioconductor.org/packages/siggenes" + list_url = homepage + + version('1.50.0', git='https://git.bioconductor.org/packages/siggenes', commit='b1818f26e1449005ffd971df6bda8da0303080bc') + + depends_on('r-biobase', type=('build', 'run')) + depends_on('r-multtest', type=('build', 'run')) + depends_on('r@3.4.0:3.4.9', when='@1.50.0') |