diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/genemark-et/package.py | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/var/spack/repos/builtin/packages/genemark-et/package.py b/var/spack/repos/builtin/packages/genemark-et/package.py index 621ef7e320..bb41a3e7ff 100644 --- a/var/spack/repos/builtin/packages/genemark-et/package.py +++ b/var/spack/repos/builtin/packages/genemark-et/package.py @@ -10,10 +10,16 @@ import glob class GenemarkEt(Package): """Gene Prediction in Bacteria, archaea, Metagenomes and - Metatranscriptomes.""" + Metatranscriptomes. + When downloaded this file is named the same for all versions. + Spack will search your current directory for the download file. + Alternatively, add this file to a mirror so that Spack can find it. + For instructions on how to set up a mirror, see + http://spack.readthedocs.io/en/latest/mirrors.html""" homepage = "http://topaz.gatech.edu/GeneMark" + version('4.38', sha256='cee3bd73d331be44159eac15469560d0b07ffa2c98ac764c37219e1f3b7d3146') version('4.33', '4ab7d7d3277a685dfb49e11bc5b493c3') depends_on('perl', type=('build', 'run')) @@ -23,12 +29,14 @@ class GenemarkEt(Package): def install(self, spec, prefix): mkdirp(prefix.bin) + mkdirp(prefix.bin.heu_dir) with working_dir('gmes_petap'): install_tree('lib', prefix.lib) files = glob.iglob('*') for file in files: if os.path.isfile(file): install(file, prefix.bin) + install_tree('heu_dir', prefix.bin.heu_dir) def setup_environment(self, spack_env, run_env): run_env.prepend_path('PERL5LIB', prefix.lib) |