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-rw-r--r--var/spack/repos/builtin/packages/preseq/package.py44
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diff --git a/var/spack/repos/builtin/packages/preseq/package.py b/var/spack/repos/builtin/packages/preseq/package.py
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+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Preseq(MakefilePackage):
+ """The preseq package is aimed at predicting and estimating the complexity
+ of a genomic sequencing library, equivalent to predicting and
+ estimating the number of redundant reads from a given sequencing depth
+ and how many will be expected from additional sequencing using an
+ initial sequencing experiment."""
+
+ homepage = "https://github.com/smithlabcode/preseq"
+ url = "https://github.com/smithlabcode/preseq/releases/download/v2.0.2/preseq_v2.0.2.tar.bz2"
+
+ version('2.0.2', '9f2a7b597c9f08b821db6ee55e2ea39c')
+
+ depends_on('samtools')
+ depends_on('gsl')
+
+ def setup_environment(self, spack_env, run_env):
+ spack_env.set('PREFIX', self.prefix)