diff options
321 files changed, 965 insertions, 174 deletions
diff --git a/var/spack/repos/builtin/packages/r-ade4/package.py b/var/spack/repos/builtin/packages/r-ade4/package.py index cf6ef6b349..ce1df4640c 100644 --- a/var/spack/repos/builtin/packages/r-ade4/package.py +++ b/var/spack/repos/builtin/packages/r-ade4/package.py @@ -19,6 +19,7 @@ class RAde4(RPackage): cran = "ade4" + version("1.7-22", sha256="007df54e83a2a6cb8d6da8006f0aace011e7eaa7744dc5f8230ac2c002b393b4") version("1.7-20", sha256="ddc75788b55902f17dabda209eb67c378aa0233767697e00fa3f8fc85e4bad7b") version("1.7-19", sha256="c85111881ff93a261ca34a5b5ef313d1c0ff9b84f0b23596bc56cfa696f165ef") version("1.7-18", sha256="ecb6f4c42c60f39702aa96f454bb536a333049c9608ee2b6bdf8795e059cc525") @@ -31,5 +32,7 @@ class RAde4(RPackage): depends_on("r-mass", type=("build", "run")) depends_on("r-pixmap", type=("build", "run"), when="@1.7-16:") depends_on("r-sp", type=("build", "run"), when="@1.7-16:") + depends_on("r-rcpp", type=("build", "run"), when="@1.7-22:") + depends_on("r-rcpparmadillo", type=("build", "run"), when="@1.7-22:") depends_on("r-progress", type=("build", "run"), when="@1.7-16") diff --git a/var/spack/repos/builtin/packages/r-adegenet/package.py b/var/spack/repos/builtin/packages/r-adegenet/package.py index 65ae04c261..e0947b8d0b 100644 --- a/var/spack/repos/builtin/packages/r-adegenet/package.py +++ b/var/spack/repos/builtin/packages/r-adegenet/package.py @@ -21,6 +21,7 @@ class RAdegenet(RPackage): cran = "adegenet" + version("2.1.10", sha256="ab62780ac1dd575d01f3e0869b34728a74b2ca2eaeeccb2f520007e9a578b163") version("2.1.8", sha256="80d72c3eefe077723dec91c98b7d46815b9659ab7196581d18b6e9d6c27f5025") version("2.1.6", sha256="7823de4933634cb887481fe4b12cf2faacbaa1b4b66939584d10fcb7ce2da26b") version("2.1.5", sha256="e4eee8c41dae6cb0841db74ec6f9adb2580873f3e313471f37df58324c1857f2") diff --git a/var/spack/repos/builtin/packages/r-adegraphics/package.py b/var/spack/repos/builtin/packages/r-adegraphics/package.py index c4f14fadd5..e01e96d865 100644 --- a/var/spack/repos/builtin/packages/r-adegraphics/package.py +++ b/var/spack/repos/builtin/packages/r-adegraphics/package.py @@ -15,6 +15,7 @@ class RAdegraphics(RPackage): cran = "adegraphics" + version("1.0-18", sha256="8fe07fc0f73e9917e098de2ee8e6fdb3e07775446683b6222692a3298e4d563c") version("1.0-16", sha256="7ba59ce9aeefe1c25b4b118d08ef458ffd34115412c147cc428629e72a82ec3a") version("1.0-15", sha256="87bbcd072e9a898955f5ede4315e82365086a50a2887bf5bd2e94bbb4d3f678a") diff --git a/var/spack/repos/builtin/packages/r-adespatial/package.py b/var/spack/repos/builtin/packages/r-adespatial/package.py index 11331e9760..b9d95a9203 100644 --- a/var/spack/repos/builtin/packages/r-adespatial/package.py +++ b/var/spack/repos/builtin/packages/r-adespatial/package.py @@ -17,6 +17,7 @@ class RAdespatial(RPackage): cran = "adespatial" + version("0.3-21", sha256="4ff65f9bc05892a2d37d34ab2b77dbd24f980adc891f5f94f8e56aec771ea79f") version("0.3-20", sha256="f88e009563087c52af5be490bd111cc38b0b70437bbfa189e846080a069b64eb") version("0.3-19", sha256="db50f1c42961e40bcef6d714a89a09b1345dab2dd013cea8e2122fdf99d5d223") version("0.3-16", sha256="987bd6e0bc6a32ac8e678338ffbbd88580007c4916129b51da681c331818a821") diff --git a/var/spack/repos/builtin/packages/r-afex/package.py b/var/spack/repos/builtin/packages/r-afex/package.py index 23e980a666..3656805ca9 100644 --- a/var/spack/repos/builtin/packages/r-afex/package.py +++ b/var/spack/repos/builtin/packages/r-afex/package.py @@ -24,6 +24,7 @@ class RAfex(RPackage): cran = "afex" + version("1.3-0", sha256="f8e276a1070288c54b83db1d1214fd88fe8d8b8698cf0c2743ef2a45f61e1933") version("1.2-1", sha256="e3a8cecd46db9521039275a5bf27937afb3ec4021644cc4fac94096cc585aacb") version("1.2-0", sha256="8b57ffb8ba2f6354185fc79c8b0cab2703d753b89a100f4325bb2e4c7a3531c2") version("1.1-1", sha256="66011599b193ebbb3bd241eb7200bd68ac4b5d2d1df84e63e9fdd72fb4110427") diff --git a/var/spack/repos/builtin/packages/r-amelia/package.py b/var/spack/repos/builtin/packages/r-amelia/package.py index 81a8d7e6b2..dd1fdd7322 100644 --- a/var/spack/repos/builtin/packages/r-amelia/package.py +++ b/var/spack/repos/builtin/packages/r-amelia/package.py @@ -27,10 +27,12 @@ class RAmelia(RPackage): cran = "Amelia" + version("1.8.1", sha256="120ce62a2acfc845dbeb155ce3f33b41ebad324bc73693a918a95194a9fc47e4") version("1.8.0", sha256="3ec1d5a68dac601b354227916aa8ec72fa1216b603dd887aae2b24cb69b5995e") version("1.7.6", sha256="63c08d374aaf78af46c34dc78da719b3085e58d9fabdc76c6460d5193a621bea") depends_on("r@3.0.2:", type=("build", "run")) depends_on("r-rcpp@0.11:", type=("build", "run")) depends_on("r-foreign", type=("build", "run")) + depends_on("r-rlang", type=("build", "run"), when="@1.8.1:") depends_on("r-rcpparmadillo", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-ape/package.py b/var/spack/repos/builtin/packages/r-ape/package.py index c5e303eca3..8bb27e4f09 100644 --- a/var/spack/repos/builtin/packages/r-ape/package.py +++ b/var/spack/repos/builtin/packages/r-ape/package.py @@ -27,6 +27,7 @@ class RApe(RPackage): cran = "ape" + version("5.7-1", sha256="8b09c71218d8aa629e43bc807b433a4e30a61847d91b2810e31c366f0fe5057a") version("5.6-2", sha256="9b62450a0390a1f07df007d348ad4cedcd814d42cb11c5a300ed33550fd41257") version("5.6-1", sha256="25401e036576eed1200e15bf68879ccd85611303a3508b989e15164cd4c0f7f7") version("5.4-1", sha256="f0316c8e74ce900053e8b3e8c9322b9d10e7730f3be2150365f74630bee7eee4") @@ -37,6 +38,8 @@ class RApe(RPackage): version("4.1", sha256="935af5ddadcba832d3f9cc032a80fc1a2e627a7ed54ef5f3773f87e06374a924") depends_on("r@3.2:", type=("build", "run")) + depends_on("r@3.2.0:", type=("build", "run"), when="@5.7-1:") depends_on("r-nlme", type=("build", "run")) depends_on("r-lattice", type=("build", "run")) depends_on("r-rcpp@0.12.0:", type=("build", "run")) + depends_on("r-digest", type=("build", "run"), when="@5.7-1:") diff --git a/var/spack/repos/builtin/packages/r-aplot/package.py b/var/spack/repos/builtin/packages/r-aplot/package.py index d1726e9dfc..2ba3522629 100644 --- a/var/spack/repos/builtin/packages/r-aplot/package.py +++ b/var/spack/repos/builtin/packages/r-aplot/package.py @@ -18,6 +18,7 @@ class RAplot(RPackage): cran = "aplot" + version("0.1.10", sha256="d937768241f887628b88bb3b49dd6cbe9b7dae39ae7054e7380a9836721a67d1") version("0.1.8", sha256="d931d7769dc7ce4bc938e8c068973721e89da0aa5f40a04f8a9119621b33459c") version("0.1.7", sha256="f6250f5f6d1addc8d5717be80a92c569bfd83d35bce2e3dbeb251c9ae1be8616") version("0.1.6", sha256="7d69d1968bc613d8ceccc05c53362b0f62b632e1c6ef5100c91b65b15afa200c") @@ -26,6 +27,7 @@ class RAplot(RPackage): depends_on("r-ggfun@0.0.4:", type=("build", "run"), when="@0.1.2:") depends_on("r-ggfun@0.0.6:", type=("build", "run"), when="@0.1.4:") + depends_on("r-ggfun@0.0.9:", type=("build", "run"), when="@0.1.10:") depends_on("r-ggplot2", type=("build", "run")) depends_on("r-ggplotify", type=("build", "run")) depends_on("r-patchwork", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-bayesm/package.py b/var/spack/repos/builtin/packages/r-bayesm/package.py index b510bbc399..58dc59f077 100644 --- a/var/spack/repos/builtin/packages/r-bayesm/package.py +++ b/var/spack/repos/builtin/packages/r-bayesm/package.py @@ -31,6 +31,7 @@ class RBayesm(RPackage): cran = "bayesm" + version("3.1-5", sha256="f223074ca41ede293b48350eac77a565e034f0f8cf3dd72d0e1d126cc58047a2") version("3.1-4", sha256="061b216c62bc72eab8d646ad4075f2f78823f9913344a781fa53ea7cf4a48f94") version("3.1-3", sha256="51e4827eca8cd4cf3626f3c2282543df7c392b3ffb843f4bfb386fe104642a10") version("3.1-2", sha256="a332f16e998ab10b17a2b1b9838d61660c36e914fe4d2e388a59f031d52ad736") diff --git a/var/spack/repos/builtin/packages/r-bh/package.py b/var/spack/repos/builtin/packages/r-bh/package.py index 8796a20a08..5f7482d333 100644 --- a/var/spack/repos/builtin/packages/r-bh/package.py +++ b/var/spack/repos/builtin/packages/r-bh/package.py @@ -26,6 +26,7 @@ class RBh(RPackage): cran = "BH" + version("1.81.0-1", sha256="f51c8badd6f181e06353314e1d15a6ec1495cc498ee74b6fa4ea8aba6e97ff64") version("1.78.0-0", sha256="3b9e9d07682013e0c06a396dda176b405eab99a7273eca6c40d1b4c4110e8cb3") version("1.75.0-0", sha256="ae4c10992607dd697663f60675a46a5770851da159330bb63c4a68890bdd6f5a") version("1.72.0-3", sha256="888ec1a3316bb69e1ba749b08ba7e0903ebc4742e3a185de8d148c13cddac8ab") diff --git a/var/spack/repos/builtin/packages/r-biasedurn/package.py b/var/spack/repos/builtin/packages/r-biasedurn/package.py index 649de6d018..388c7df064 100644 --- a/var/spack/repos/builtin/packages/r-biasedurn/package.py +++ b/var/spack/repos/builtin/packages/r-biasedurn/package.py @@ -18,5 +18,6 @@ class RBiasedurn(RPackage): cran = "BiasedUrn" + version("2.0.9", sha256="bac62bbbc3e2417772f8784996a6c2d0857adb42e86e46b1a9703b187a406b09") version("2.0.8", sha256="205e7f8da8fba76fbf4bd9d12a027599b685dedecc818aad39de5c51dc47b856") version("1.07", sha256="2377c2e59d68e758a566452d7e07e88663ae61a182b9ee455d8b4269dda3228e") diff --git a/var/spack/repos/builtin/packages/r-bibtex/package.py b/var/spack/repos/builtin/packages/r-bibtex/package.py index 63d3b6da67..a65e992905 100644 --- a/var/spack/repos/builtin/packages/r-bibtex/package.py +++ b/var/spack/repos/builtin/packages/r-bibtex/package.py @@ -13,11 +13,11 @@ class RBibtex(RPackage): cran = "bibtex" + version("0.5.1", sha256="f3c1a0a4e666c4addd73ff13ce8ce073d73d10ebca36d333328ade8a0b493ed1") version("0.5.0", sha256="ec81b4ee5b43f2114afd18d266f4633451abe20013422eb03848f00924b79167") version("0.4.2.3", sha256="7bad194920b412781ac9754ad41058d52d3cd7186e1851c2bce3640490e9bc6d") version("0.4.2", sha256="1f06ab3660c940405230ad16ff6e4ba38d4418a59cd9b16d78a4349f8b488372") depends_on("r@3.0.2:", type=("build", "run")) depends_on("r-backports@1.4.0:", type=("build", "run"), when="@0.5.0:") - depends_on("r-stringr", type=("build", "run")) - depends_on("r-stringr", when="@:0.4.2.3") + depends_on("r-stringr", type=("build", "run"), when="@:0.4.2.3") diff --git a/var/spack/repos/builtin/packages/r-bigmemory-sri/package.py b/var/spack/repos/builtin/packages/r-bigmemory-sri/package.py index ebb559aeb7..413ec4422e 100644 --- a/var/spack/repos/builtin/packages/r-bigmemory-sri/package.py +++ b/var/spack/repos/builtin/packages/r-bigmemory-sri/package.py @@ -14,4 +14,5 @@ class RBigmemorySri(RPackage): cran = "bigmemory.sri" + version("0.1.6", sha256="3bfa6ac966ce0ea93283f5856a853d0ee5ff85aedd7a7d1ca8a93d0aa642860c") version("0.1.3", sha256="55403252d8bae9627476d1f553236ea5dc7aa6e54da6980526a6cdc66924e155") diff --git a/var/spack/repos/builtin/packages/r-bigmemory/package.py b/var/spack/repos/builtin/packages/r-bigmemory/package.py index 50f262285f..3637e7b3c1 100644 --- a/var/spack/repos/builtin/packages/r-bigmemory/package.py +++ b/var/spack/repos/builtin/packages/r-bigmemory/package.py @@ -24,3 +24,4 @@ class RBigmemory(RPackage): depends_on("r-rcpp", type=("build", "run")) depends_on("r-uuid@1.0-2:", type=("build", "run"), when="@4.6.1:") depends_on("r-bh", type=("build", "run")) + depends_on("uuid", when="@4.6.1:") diff --git a/var/spack/repos/builtin/packages/r-bio3d/package.py b/var/spack/repos/builtin/packages/r-bio3d/package.py index a36e44ae3e..b0559d67e8 100644 --- a/var/spack/repos/builtin/packages/r-bio3d/package.py +++ b/var/spack/repos/builtin/packages/r-bio3d/package.py @@ -32,3 +32,4 @@ class RBio3d(RPackage): depends_on("r@3.1.0:", type=("build", "run")) depends_on("r-rcpp", type=("build", "run")) + depends_on("zlib") diff --git a/var/spack/repos/builtin/packages/r-biocmanager/package.py b/var/spack/repos/builtin/packages/r-biocmanager/package.py index 1685dc7f33..be935fb765 100644 --- a/var/spack/repos/builtin/packages/r-biocmanager/package.py +++ b/var/spack/repos/builtin/packages/r-biocmanager/package.py @@ -13,6 +13,7 @@ class RBiocmanager(RPackage): cran = "BiocManager" + version("1.30.20", sha256="b9e72d7687abbd785a69fecb530ec86ad92257a6be95b8e15953b193a516d5ea") version("1.30.19", sha256="6897ab1c58ab2fa3108e22d70bc4150c683bb4ac29355ba7886b88acc30c18e2") version("1.30.18", sha256="f763126b45614e1b83260da5311923eac50db24002f3c22fa5f667434a5b5c35") version("1.30.16", sha256="75a754a55192ef6aa6ac9b054fd5381ff03fe6bb8b2e033eb8143da930ef3855") diff --git a/var/spack/repos/builtin/packages/r-blavaan/package.py b/var/spack/repos/builtin/packages/r-blavaan/package.py index f6c05e1bdc..206e7ba9e6 100644 --- a/var/spack/repos/builtin/packages/r-blavaan/package.py +++ b/var/spack/repos/builtin/packages/r-blavaan/package.py @@ -16,6 +16,7 @@ class RBlavaan(RPackage): cran = "blavaan" + version("0.4-7", sha256="43577264a1faff3cf98fce2c03b729816b40a82d36846458b8026b62da3008c3") version("0.4-3", sha256="a9f9f7b32aab7e7f179340c9f0f9d154b5fac51352c4fd590d317c201fe81b74") version("0.4-1", sha256="afb077d72f84ef0b6f45ef2ccb8335358042943c32a3472a9ca239ebca1c4aa4") version("0.3-18", sha256="373960a22fc741c765e2ad2e0d99c1d4b2162f5f2a230ef314778ef8f433e865") @@ -25,6 +26,7 @@ class RBlavaan(RPackage): depends_on("r-lavaan@0.6-5:", type=("build", "run")) depends_on("r-lavaan@0.6-7:", type=("build", "run"), when="@0.3-18:") depends_on("r-lavaan@0.6-10:", type=("build", "run"), when="@0.4-1:") + depends_on("r-lavaan@0.6-14:", type=("build", "run"), when="@0.4-7:") depends_on("r-rcpp@0.12.15:", type=("build", "run")) depends_on("r-coda", type=("build", "run")) depends_on("r-mnormt", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-boot/package.py b/var/spack/repos/builtin/packages/r-boot/package.py index 9205f9334d..d09c64b405 100644 --- a/var/spack/repos/builtin/packages/r-boot/package.py +++ b/var/spack/repos/builtin/packages/r-boot/package.py @@ -15,6 +15,7 @@ class RBoot(RPackage): cran = "boot" + version("1.3-28.1", sha256="d4cde76fcc8ccc7ffa329de69147b66a6a93a10188e89342fd18207b1d02ff53") version("1.3-28", sha256="9f7158fd2714659f590c3955651893dc24bd8f39196bc5a4cc35b0b031744a32") version("1.3-25", sha256="464835fcb453072346ce49e4ae318e04c9dba682349be49db616623b6088fbbe") version("1.3-23", sha256="79236a5a770dc8bf5ce25d9aa303c5dc0574d94aa043fd00b8b4c8ccc877357f") diff --git a/var/spack/repos/builtin/packages/r-boruta/package.py b/var/spack/repos/builtin/packages/r-boruta/package.py index bea3421249..8e97547d00 100644 --- a/var/spack/repos/builtin/packages/r-boruta/package.py +++ b/var/spack/repos/builtin/packages/r-boruta/package.py @@ -15,6 +15,7 @@ class RBoruta(RPackage): cran = "Boruta" + version("8.0.0", sha256="38e75b1ebc8b2d1c54b3373a42529b819c7b4773fd4932f57bc9701d1e3e3dc7") version("7.0.0", sha256="6ff520d27d68637058c33a34c547a656bb44d5e351b7cc7afed6cd4216275c78") version("6.0.0", sha256="1c9a7aabe09f040e147f6c614f5fe1d0b951d3b0f0024161fbb4c31da8fae8de") diff --git a/var/spack/repos/builtin/packages/r-brms/package.py b/var/spack/repos/builtin/packages/r-brms/package.py index a6e9d1fd8d..3f415abaf8 100644 --- a/var/spack/repos/builtin/packages/r-brms/package.py +++ b/var/spack/repos/builtin/packages/r-brms/package.py @@ -27,6 +27,7 @@ class RBrms(RPackage): cran = "brms" + version("2.19.0", sha256="0e146842c7acfcc6b8273df536eabb5279fb3bf2ae27ce1696f7d838d94fe5c1") version("2.18.0", sha256="63914be03cd1c4e6333317d22d7827ba2dc0414cb0dc88337cf74763ba07e111") version("2.17.0", sha256="24e5a3a40b81bea558e8f660d0de7fd1a4c2080c7553baac98f34dd2682ece71") version("2.16.3", sha256="68302b10b5264f72d163d01c17792c002306cf37f0ee778dcec4c7e118f923e1") @@ -46,6 +47,7 @@ class RBrms(RPackage): depends_on("r-shinystan@2.4.0:", type=("build", "run")) depends_on("r-bridgesampling@0.3-0:", type=("build", "run")) depends_on("r-glue@1.3.0:", type=("build", "run")) + depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@2.19.0:") depends_on("r-future@1.19.0:", type=("build", "run")) depends_on("r-matrixstats", type=("build", "run")) depends_on("r-nleqslv", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-broom/package.py b/var/spack/repos/builtin/packages/r-broom/package.py index 40f3285023..c6e9b57218 100644 --- a/var/spack/repos/builtin/packages/r-broom/package.py +++ b/var/spack/repos/builtin/packages/r-broom/package.py @@ -20,6 +20,7 @@ class RBroom(RPackage): cran = "broom" + version("1.0.4", sha256="1d5f11b509786a8a45ffdd137243e24d6445f2944947cbd62a0734a06add0ad6") version("1.0.1", sha256="4b5e5aa485f0e23ed993088fc84159e31a00087e3a12327071dda25193382892") version("0.8.0", sha256="66a1095d4430450dc810a5cea61cd7e7bee0e23739dcf5ddc5b57c9894fcf999") version("0.7.12", sha256="04fac12b2546689603a474fb92a0572f4241ae87b51b21b0808814a489227bd9") @@ -32,12 +33,14 @@ class RBroom(RPackage): version("0.4.2", sha256="9f409413623cf25e7110452e6215353af5114f7044d73af182bd6c10971c5a44") depends_on("r@3.1:", type=("build", "run")) + depends_on("r@3.5:", type=("build", "run"), when="@1.0.4:") depends_on("r-backports", type=("build", "run"), when="@0.5.0:") depends_on("r-dplyr", type=("build", "run")) depends_on("r-dplyr@1.0.0:", type=("build", "run"), when="@0.7.3:") depends_on("r-ellipsis", type=("build", "run"), when="@0.7.3:") depends_on("r-generics@0.0.2:", type=("build", "run"), when="@0.5.1:") depends_on("r-glue", type=("build", "run"), when="@0.7.3:") + depends_on("r-lifecycle", type=("build", "run"), when="@1.0.4:") depends_on("r-purrr", type=("build", "run"), when="@0.5.0:") depends_on("r-rlang", type=("build", "run"), when="@0.7.3:") depends_on("r-stringr", type=("build", "run")) @@ -45,9 +48,9 @@ class RBroom(RPackage): depends_on("r-tibble@3.0.0:", type=("build", "run"), when="@0.7.3:") depends_on("r-tidyr", type=("build", "run")) depends_on("r-tidyr@1.0.0:", type=("build", "run"), when="@0.7.3:") - depends_on("r-ggplot2", type=("build", "run"), when="@0.7.10:") depends_on("r-plyr", type=("build", "run"), when="@:0.4.2") depends_on("r-psych", type=("build", "run"), when="@:0.4.2") depends_on("r-reshape2", type=("build", "run"), when="@:0.5.2") depends_on("r-nlme", type=("build", "run"), when="@:0.5.2") + depends_on("r-ggplot2", type=("build", "run"), when="@0.7.10:1.0.1") diff --git a/var/spack/repos/builtin/packages/r-bslib/package.py b/var/spack/repos/builtin/packages/r-bslib/package.py index 73caf0b06d..75302e4137 100644 --- a/var/spack/repos/builtin/packages/r-bslib/package.py +++ b/var/spack/repos/builtin/packages/r-bslib/package.py @@ -16,16 +16,20 @@ class RBslib(RPackage): cran = "bslib" + version("0.4.2", sha256="9a40b7a1bbe409af273e1e940d921ab198ea576548f06f055f552f70ff822f19") version("0.4.1", sha256="4ebd1fc84cd19b414e8f8c13fb95270fc28ede125b6e58b08c574ca8c9e0e62f") version("0.4.0", sha256="fbea4ecec726f23618e825624f1d9c03939f765ca5a490b171ebf95b815475c2") version("0.3.1", sha256="5f5cb56e5cab9039a24cd9d70d73b69c2cab5b2f5f37afc15f71dae0339d9849") depends_on("r@2.10:", type=("build", "run")) depends_on("r-htmltools@0.5.2:", type=("build", "run")) + depends_on("r-htmltools@0.5.4:", type=("build", "run"), when="@0.4.2:") depends_on("r-jsonlite", type=("build", "run")) depends_on("r-sass@0.4.0:", type=("build", "run")) depends_on("r-jquerylib@0.1.3:", type=("build", "run")) depends_on("r-rlang", type=("build", "run")) depends_on("r-memoise", type=("build", "run"), when="@0.4.0:") depends_on("r-memoise@2.0.1:", type=("build", "run"), when="@0.4.1:") + depends_on("r-mime", type=("build", "run"), when="@0.4.2:") + depends_on("r-base64enc", type=("build", "run"), when="@0.4.2:") depends_on("r-cachem", type=("build", "run"), when="@0.4.0:") diff --git a/var/spack/repos/builtin/packages/r-c50/package.py b/var/spack/repos/builtin/packages/r-c50/package.py index e96b0861e6..cb91712138 100644 --- a/var/spack/repos/builtin/packages/r-c50/package.py +++ b/var/spack/repos/builtin/packages/r-c50/package.py @@ -15,6 +15,7 @@ class RC50(RPackage): cran = "C50" + version("0.1.8", sha256="bbd1bd5ed0ed5257529396697bea2a5841c8159470ba09d2066411d4aeda9c15") version("0.1.6", sha256="cc20c0e2656287e6ca76ea341a703c816798b212ea4658f249ec047dbbf18cb4") version("0.1.5", sha256="f0c17b4830371832ca64f5fcc702351a394ee90b384e0865307de9447f3f16d7") version("0.1.3.1", sha256="0b151ba8deef50ab2e2ad8469d87f54f0c6ab862f5c790ed8bb16cb3b8027546") diff --git a/var/spack/repos/builtin/packages/r-car/package.py b/var/spack/repos/builtin/packages/r-car/package.py index 5bfad00b9e..3ac525aa39 100644 --- a/var/spack/repos/builtin/packages/r-car/package.py +++ b/var/spack/repos/builtin/packages/r-car/package.py @@ -14,6 +14,7 @@ class RCar(RPackage): cran = "car" + version("3.1-2", sha256="89263491977ac8e9406b2f4b1638bf06c7ddd1b0e0e3ecda4be61420474674c8") version("3.1-1", sha256="8fc55815eed7e46a32b54da9e0bfa4b74a8d082d73d896e3372f2a413b6bd2bc") version("3.1-0", sha256="bd52b4eaea46ce828fccd93445301d06ebd265e2ffff796064875a8c0f0aea21") version("3.0-13", sha256="d35ae8da80284c9e4471ff13e7100c3cdc1809fd06f813cd223a3958e29e47eb") @@ -39,5 +40,4 @@ class RCar(RPackage): depends_on("r-lme4@1.1-27.1:", type=("build", "run"), when="@3.0-11:") depends_on("r-nlme", type=("build", "run"), when="@3.0:") depends_on("r-scales", type=("build", "run"), when="@3.1-1:") - depends_on("r-maptools", type=("build", "run"), when="@3.0:") - depends_on("r-maptools", when="@:3.1-0") + depends_on("r-maptools", type=("build", "run"), when="@3.0:3.1-0") diff --git a/var/spack/repos/builtin/packages/r-caracas/package.py b/var/spack/repos/builtin/packages/r-caracas/package.py index 1be15bfa01..52bad211d2 100644 --- a/var/spack/repos/builtin/packages/r-caracas/package.py +++ b/var/spack/repos/builtin/packages/r-caracas/package.py @@ -15,6 +15,7 @@ class RCaracas(RPackage): cran = "caracas" + version("2.0.0", sha256="9271239bf7457787371cbd44be74cb9909d67ab7c975b1744d8cf60d8b044b95") version("1.1.2", sha256="9c726c77508617e74d1a11ac6e276973df42e1ad81145db455cc6e420526c757") version("1.1.1", sha256="e14487c9492417cf5c7d7373c37dbb4fea4d91180a1a03154e51eaa7878b2769") version("1.0.1", sha256="2482dd7b77791243b8174cb41b80b735c3ebd7db837bbf991127514f492af594") @@ -22,5 +23,7 @@ class RCaracas(RPackage): depends_on("r@3.0:", type=("build", "run")) depends_on("r-reticulate@1.14:", type=("build", "run")) + depends_on("r-doby@4.6.15:", type=("build", "run"), when="@2.0.0:") + depends_on("r-matrix", type=("build", "run"), when="@2.0.0:") depends_on("r-magrittr", type=("build", "run"), when="@1.1.1:") depends_on("python@3.6:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-caret/package.py b/var/spack/repos/builtin/packages/r-caret/package.py index 92b8cd2880..b8ba89be9c 100644 --- a/var/spack/repos/builtin/packages/r-caret/package.py +++ b/var/spack/repos/builtin/packages/r-caret/package.py @@ -14,6 +14,7 @@ class RCaret(RPackage): cran = "caret" + version("6.0-94", sha256="2715e83ca260bb739cd926a55b0d2da1e3f6308b17b56862466e738d930d29a8") version("6.0-93", sha256="4c156b88879d390436a54779ea19ffbae3f476533d83caaf30400d76130c4a07") version("6.0-92", sha256="1d814a2a921a23ad8b9a7da6f788e6abc06f5668b3918bd440d4355bc4b81511") version("6.0-90", sha256="e851a4ed7d939c665e57e3551a5464b09fe4285e7c951236efdd890b0da866bc") @@ -34,7 +35,7 @@ class RCaret(RPackage): depends_on("r-nlme", type=("build", "run")) depends_on("r-plyr", type=("build", "run")) depends_on("r-proc", type=("build", "run"), when="@6.0-86:") - depends_on("r-recipes@0.1.4:", type=("build", "run"), when="@6.0-83:6.0-84") + depends_on("r-recipes@0.1.4:", type=("build", "run"), when="@6.0-83:") depends_on("r-recipes@0.1.10:", type=("build", "run"), when="@6.0-86:") depends_on("r-reshape2", type=("build", "run")) depends_on("r-withr@2.0.0:", type=("build", "run"), when="@6.0-83:") diff --git a/var/spack/repos/builtin/packages/r-caroline/package.py b/var/spack/repos/builtin/packages/r-caroline/package.py index a07ee23d6a..91b17bbb0e 100644 --- a/var/spack/repos/builtin/packages/r-caroline/package.py +++ b/var/spack/repos/builtin/packages/r-caroline/package.py @@ -22,7 +22,9 @@ class RCaroline(RPackage): cran = "caroline" + version("0.9.0", sha256="7231daacf2f0e89d9363ea919071f8352ae487011f56e84a4054de11a9243ac8") version("0.8.0", sha256="58f464711f7279ca2aa173e6ce29d3308e01db37dccefbbf14cd7720c0231976") version("0.7.6", sha256="e7ba948f7d87f091b498dd0eec2ca4fdad7af4e2bbb67e0945c2f0d3f2eadda9") depends_on("r@1.8.0:", type=("build", "run")) + depends_on("r@2.0.0:", type=("build", "run"), when="@0.9.0:") diff --git a/var/spack/repos/builtin/packages/r-chron/package.py b/var/spack/repos/builtin/packages/r-chron/package.py index e74c7a6956..ee88e1687e 100644 --- a/var/spack/repos/builtin/packages/r-chron/package.py +++ b/var/spack/repos/builtin/packages/r-chron/package.py @@ -13,6 +13,7 @@ class RChron(RPackage): cran = "chron" + version("2.3-60", sha256="0e0675cec55b6cea87fc5776846215e0445442554684120079e66013067491ee") version("2.3-58", sha256="057fc628cde330c22b9d20365316d3632c2d217f4f2f97d39b1d1a2c93f766d0") version("2.3-57", sha256="9645d86a84d1afc12a0accf4f826fdd40e6d050a313424ad70f8085e8f19c232") version("2.3-56", sha256="863ecbb951a3da994761ea9062fa96d34e94e19fbc4122521ac179274dfa3f5d") diff --git a/var/spack/repos/builtin/packages/r-class/package.py b/var/spack/repos/builtin/packages/r-class/package.py index d455cd466d..5c2debd6ab 100644 --- a/var/spack/repos/builtin/packages/r-class/package.py +++ b/var/spack/repos/builtin/packages/r-class/package.py @@ -14,6 +14,7 @@ class RClass(RPackage): cran = "class" + version("7.3-21", sha256="0c19404aa4d2da61a62495e788b07c8e429c4c5ee64486ea5e6dd347bcaecddf") version("7.3-20", sha256="e65b046bc72b312ff0c5dc7feba4fa3e9bc63387274d44911493782b85f65483") version("7.3-19", sha256="7820ae94b22009561a69ed1f8b2ca2a3814be6a656e9884738206997caecbe37") version("7.3-17", sha256="be1f85b6df7556db93f50cb08106aac6620d4b5bb3fee846422863a022461313") diff --git a/var/spack/repos/builtin/packages/r-classint/package.py b/var/spack/repos/builtin/packages/r-classint/package.py index ba89e7dc55..ed87cff385 100644 --- a/var/spack/repos/builtin/packages/r-classint/package.py +++ b/var/spack/repos/builtin/packages/r-classint/package.py @@ -14,6 +14,7 @@ class RClassint(RPackage): cran = "classInt" + version("0.4-9", sha256="5b11af7d08f8793c7b47ee7c68b8e371cb23027165d30abddbd8b2abcc20e1c3") version("0.4-8", sha256="6ae9617f5b71bbecfa204a4f36b5972808bafd060d87a4a5bac17f3ad2ca59b3") version("0.4-3", sha256="9ede7a2a7a6b6c114919a3315a884fb592e33b037a50a4fe45cbd4fe2fc434ac") version("0.4-1", sha256="39c63f8e37b379033d73d57929b5b8ea41b0023626cc1cec648d66bade5d0103") diff --git a/var/spack/repos/builtin/packages/r-cli/package.py b/var/spack/repos/builtin/packages/r-cli/package.py index 620d9d598f..80df40b5ef 100644 --- a/var/spack/repos/builtin/packages/r-cli/package.py +++ b/var/spack/repos/builtin/packages/r-cli/package.py @@ -18,6 +18,7 @@ class RCli(RPackage): cran = "cli" + version("3.6.1", sha256="be3006cec7e67f9ae25e21b4658c4bec680038c2ef7467df5f14da3311a05e36") version("3.4.1", sha256="1c585efbfd8b8685c66fac34bcb60f28c351691bb4b9931df214e6e47fd9744e") version("3.3.0", sha256="c3a9ebbcb9017fb9aeda4f7df5ca981e42b169cbd7ce13e592cda2cd74250d63") version("3.2.0", sha256="cd5a1b754d09de33f088f25ecdb0494100f9a42bc0a66622bfd7d8ec5498e862") @@ -36,6 +37,5 @@ class RCli(RPackage): depends_on("r-assertthat", type=("build", "run"), when="@:2.3") depends_on("r-crayon@1.3.4:", type=("build", "run"), when="@:2.2") depends_on("r-fansi", type=("build", "run"), when="@2:2.2") - depends_on("r-glue", type=("build", "run"), when="@2:") - depends_on("r-glue@1.6.0:", type=("build", "run"), when="@3.3.0:") - depends_on("r-glue", when="@:3.3.0") + depends_on("r-glue", type=("build", "run"), when="@2:3.4.1") + depends_on("r-glue@1.6.0:", type=("build", "run"), when="@3.3.0") diff --git a/var/spack/repos/builtin/packages/r-clock/package.py b/var/spack/repos/builtin/packages/r-clock/package.py new file mode 100644 index 0000000000..cb35a5b630 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-clock/package.py @@ -0,0 +1,27 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RClock(RPackage): + """Date-Time Types and Tools. + + Provides a comprehensive library for date-time manipulations using a new + family of orthogonal date-time classes (durations, time points, + zoned-times, and calendars) that partition responsibilities so that the + complexities of time zones are only considered when they are really needed. + Capabilities include: date-time parsing, formatting, arithmetic, extraction + and updating of components, and rounding.""" + + cran = "clock" + + version("0.6.1", sha256="f80c385fd8229538968ffb71d7de53ddc82bfcec6641f8e76f299546c43c1702") + + depends_on("r@3.4:", type=("build", "run")) + depends_on("r-rlang@1.0.4:", type=("build", "run")) + depends_on("r-tzdb@0.3.0:", type=("build", "run")) + depends_on("r-vctrs@0.4.1:", type=("build", "run")) + depends_on("r-cpp11@0.4.2:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-clue/package.py b/var/spack/repos/builtin/packages/r-clue/package.py index d171aab56b..45c9161f2e 100644 --- a/var/spack/repos/builtin/packages/r-clue/package.py +++ b/var/spack/repos/builtin/packages/r-clue/package.py @@ -11,6 +11,7 @@ class RClue(RPackage): cran = "clue" + version("0.3-64", sha256="f45cb7a84c87ddca2b9f7c2ea9505016d002e6fda23322e6d57466c7a4de28af") version("0.3-62", sha256="575a3fa2c4aa1ae5c7e35f4462f2f331d291d87916aa12f0d11f61988d5e1ed2") version("0.3-61", sha256="71311b16ce380fd9a8834be95b55b3d1b47e4ee2b8acb35b8d481138c314dc31") version("0.3-60", sha256="6d21ddfd0d621ed3bac861890c600884b6ed5ff7d2a36c9778b892636dbbef2a") diff --git a/var/spack/repos/builtin/packages/r-codetools/package.py b/var/spack/repos/builtin/packages/r-codetools/package.py index 3acf370d13..33703fa4ab 100644 --- a/var/spack/repos/builtin/packages/r-codetools/package.py +++ b/var/spack/repos/builtin/packages/r-codetools/package.py @@ -11,6 +11,7 @@ class RCodetools(RPackage): cran = "codetools" + version("0.2-19", sha256="c4b7e567c87f33dad85de92f79641e5e5b5deede6d19a9dfa47133d191782dab") version("0.2-18", sha256="1a9ea6b9792dbd1688078455929385acc3a5e4bef945c77bec1261fa4a084c28") version("0.2-16", sha256="c276757c3adabaf700f2ea25835892b09bc1bd438ebd17c805ea9073ed8a74b6") version("0.2-15", sha256="4e0798ed79281a614f8cdd199e25f2c1bd8f35ecec902b03016544bd7795fa40") diff --git a/var/spack/repos/builtin/packages/r-colorspace/package.py b/var/spack/repos/builtin/packages/r-colorspace/package.py index 4c478de50e..730da4cbf5 100644 --- a/var/spack/repos/builtin/packages/r-colorspace/package.py +++ b/var/spack/repos/builtin/packages/r-colorspace/package.py @@ -27,6 +27,7 @@ class RColorspace(RPackage): cran = "colorspace" + version("2.1-0", sha256="04078abb6b54119c90dc7085d62916bf292ccb163e213f9ea70567d1be82614c") version("2.0-3", sha256="e75681cc4dd6e4b70303fd96a6d4597065dc6bffcaa4ae4244b73ff19016857f") version("2.0-2", sha256="b891cd2ec129ed5f116429345947bcaadc33969758a108521eb0cf36bd12183a") version("2.0-0", sha256="4e6a53af9918db282cefdc71eaa30f507d4d1d682bcfb74cb0dd68a0b282018e") diff --git a/var/spack/repos/builtin/packages/r-commonmark/package.py b/var/spack/repos/builtin/packages/r-commonmark/package.py index c6dd4a3c54..003fd4343d 100644 --- a/var/spack/repos/builtin/packages/r-commonmark/package.py +++ b/var/spack/repos/builtin/packages/r-commonmark/package.py @@ -18,6 +18,7 @@ class RCommonmark(RPackage): cran = "commonmark" + version("1.9.0", sha256="6dd01a5a26c8d436486abf69c2f6ad0f8dd1c811f575c31983aeb4dbd376548f") version("1.8.1", sha256="96adcb093de3d2e48811af402da70e7222a313b97f1e979e0cbe84dd59bd5cbe") version("1.8.0", sha256="7d07e72937b1cf158e69f183722bf79dbb91b8967a9dd29f4fa145500c2be668") version("1.7", sha256="d14a767a3ea9778d6165f44f980dd257423ca6043926e3cd8f664f7171f89108") diff --git a/var/spack/repos/builtin/packages/r-conflicted/package.py b/var/spack/repos/builtin/packages/r-conflicted/package.py new file mode 100644 index 0000000000..c2dc67b7b9 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-conflicted/package.py @@ -0,0 +1,25 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RConflicted(RPackage): + """An Alternative Conflict Resolution Strategy. + + R's default conflict management system gives the most recently loaded + package precedence. This can make it hard to detect conflicts, particularly + when they arise because a package update creates ambiguity that did not + previously exist. 'conflicted' takes a different approach, making every + conflict an error and forcing you to choose which function to use.""" + + cran = "conflicted" + + version("1.2.0", sha256="c99b86bb52da3e7d1f4d96d70c77304d0434db5bd906edd8d743e89ac9223088") + + depends_on("r@3.2:", type=("build", "run")) + depends_on("r-cli@3.4.0:", type=("build", "run")) + depends_on("r-memoise", type=("build", "run")) + depends_on("r-rlang@1.0.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-construct/package.py b/var/spack/repos/builtin/packages/r-construct/package.py index e32e0964b3..72e65af5ae 100644 --- a/var/spack/repos/builtin/packages/r-construct/package.py +++ b/var/spack/repos/builtin/packages/r-construct/package.py @@ -18,6 +18,7 @@ class RConstruct(RPackage): cran = "conStruct" + version("1.0.5", sha256="4d953073bd1f374a91655b4889ab1b65d92a1c89ea39eb3dac5cd852a42b8a7c") version("1.0.4", sha256="4e585b718a361061bc1432cea46fc65f802fb0ef58e4516d33e1af99bbfe90ce") version("1.0.3", sha256="b449c133a944ad05a28f84f312ed4ccbc1574c4659aa09c678618d2ae9008310") @@ -33,4 +34,5 @@ class RConstruct(RPackage): depends_on("r-stanheaders@2.18.0:", type=("build", "run")) depends_on("r-bh@1.66.0:", type=("build", "run")) depends_on("r-rcppeigen@0.3.3.3.0:", type=("build", "run")) + depends_on("r-rcppparallel@5.0.1:", type=("build", "run"), when="@1.0.5:") depends_on("gmake", type="build") diff --git a/var/spack/repos/builtin/packages/r-copula/package.py b/var/spack/repos/builtin/packages/r-copula/package.py index aa98e5e469..a5051a5bca 100644 --- a/var/spack/repos/builtin/packages/r-copula/package.py +++ b/var/spack/repos/builtin/packages/r-copula/package.py @@ -24,6 +24,7 @@ class RCopula(RPackage): cran = "copula" + version("1.1-2", sha256="88f9454d25e4dcdf53d8ca5156daf48e664769f5e13b1e835ed64f37251587d3") version("1.1-0", sha256="9ab76e6256534db2a18d3880143b8c67e385767010de861bbde25212aa75d924") version("1.0-1", sha256="d09b2ccffc7379e48b00952aa6b282baf502feebaf55cc44e93f881d7b909742") version("0.999-20", sha256="7d3d47bce2dacb05b94a772f84dbf3d83c99ac2ac11e5f1b4b03d50d9d5c0fb0") @@ -31,6 +32,7 @@ class RCopula(RPackage): depends_on("r@3.2.0:", type=("build", "run")) depends_on("r@3.5.0:", type=("build", "run"), when="@1.0-1:") depends_on("r-matrix", type=("build", "run")) + depends_on("r-matrix@1.5-0:", type=("build", "run"), when="@1.1-2:") depends_on("r-lattice", type=("build", "run")) depends_on("r-colorspace", type=("build", "run")) depends_on("r-gsl", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-cubature/package.py b/var/spack/repos/builtin/packages/r-cubature/package.py index 716c361683..fd5ecac0c6 100644 --- a/var/spack/repos/builtin/packages/r-cubature/package.py +++ b/var/spack/repos/builtin/packages/r-cubature/package.py @@ -18,6 +18,7 @@ class RCubature(RPackage): cran = "cubature" + version("2.0.4.6", sha256="330c9dc2be9bf6815473fd40efa8c2de47c1ed286cb097d0ff846b56c9e9f95a") version("2.0.4.5", sha256="a81f118e5b7950a4a29e5509f8a40d7b87544fb25783917242000561379c9023") version("2.0.4.4", sha256="087b3b2c4f25d873fa95e9d38766a17a7201d03a6f4960f1e080a8db8b67d569") version("2.0.4.2", sha256="605bdd9d90fb6645359cccd1b289c5afae235b46360ef5bdd2001aa307a7694e") diff --git a/var/spack/repos/builtin/packages/r-cubist/package.py b/var/spack/repos/builtin/packages/r-cubist/package.py index 0f881a0be9..c4bb700085 100644 --- a/var/spack/repos/builtin/packages/r-cubist/package.py +++ b/var/spack/repos/builtin/packages/r-cubist/package.py @@ -13,6 +13,7 @@ class RCubist(RPackage): cran = "Cubist" + version("0.4.2.1", sha256="f07afed59019a3febc04acc3e58728e42b42910940a1d529f9fc482931d09157") version("0.4.0", sha256="3a1f74d44300e3a38a10e3693fc019cfcca221d62d7c416abebb20811e965578") version("0.3.0", sha256="88a76e7f858a8e978a73a97ce6a3504201d889517b39ce862cef734dcf9eb263") version("0.2.3", sha256="19845f585e073f316bb4bdf74b28a624e839561faeedd40ef5548960c5b1e1f4") diff --git a/var/spack/repos/builtin/packages/r-dbplyr/package.py b/var/spack/repos/builtin/packages/r-dbplyr/package.py index c828d7010d..146e742bbc 100644 --- a/var/spack/repos/builtin/packages/r-dbplyr/package.py +++ b/var/spack/repos/builtin/packages/r-dbplyr/package.py @@ -16,6 +16,7 @@ class RDbplyr(RPackage): cran = "dbplyr" + version("2.3.2", sha256="0ddc00595ec6b21962d0bb6f470f5f7c9d61c74a4f92681a37e94e1295707fac") version("2.2.1", sha256="a6f3f644c068fe1a3b3e99a3a10de55a150d43ef20b5130e6724d142afcb0df7") version("2.1.1", sha256="aba4cf47b85ab240fd3ec4cd8d512f6e1958201e151577c1a2ebc3d6ebc5bc08") version("2.0.0", sha256="ecd71936ecfefbdda0fad24e52653ac9c0913e01126e467c92c8ba9de37b4069") @@ -27,27 +28,34 @@ class RDbplyr(RPackage): version("1.1.0", sha256="7b1e456a2d1056fa6284582cd82d2df66d06b3eea92e9995f5a91a45f246f69d") depends_on("r@3.1:", type=("build", "run")) - depends_on("r-assertthat@0.2.0:", type=("build", "run")) depends_on("r-blob@1.2.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-cli@3.3.0:", type=("build", "run"), when="@2.2.1:") + depends_on("r-cli@3.4.1:", type=("build", "run"), when="@2.3.2:") depends_on("r-dbi@1.0.0:", type=("build", "run")) depends_on("r-dplyr@0.8.0:", type=("build", "run")) depends_on("r-dplyr@1.0.3:", type=("build", "run"), when="@2.1.0") depends_on("r-dplyr@1.0.4:", type=("build", "run"), when="@2.1.1:") depends_on("r-dplyr@1.0.9:", type=("build", "run"), when="@2.2.1:") + depends_on("r-dplyr@1.1.0:", type=("build", "run"), when="@2.3.2:") depends_on("r-glue@1.2.0:", type=("build", "run")) depends_on("r-lifecycle", type=("build", "run"), when="@2.0.0:") depends_on("r-lifecycle@1.0.0:", type=("build", "run"), when="@2.1.1:") + depends_on("r-lifecycle@1.0.3:", type=("build", "run"), when="@2.3.2:") depends_on("r-magrittr", type=("build", "run"), when="@2.0.0:") depends_on("r-pillar@1.5.0:", type=("build", "run"), when="@2.2.1:") depends_on("r-purrr@0.2.5:", type=("build", "run")) + depends_on("r-purrr@1.0.1:", type=("build", "run"), when="@2.3.2:") depends_on("r-r6@2.2.2:", type=("build", "run")) depends_on("r-rlang@0.2.0:", type=("build", "run")) depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@2.2.1:") + depends_on("r-rlang@1.0.6:", type=("build", "run"), when="@2.3.2:") depends_on("r-tibble@1.4.2:", type=("build", "run")) + depends_on("r-tidyr@1.3.0:", type=("build", "run"), when="@2.3.2:") depends_on("r-tidyselect@0.2.4:", type=("build", "run")) + depends_on("r-tidyselect@1.2.0:", type=("build", "run"), when="@2.3.2:") depends_on("r-vctrs", type=("build", "run"), when="@2.1:") depends_on("r-vctrs@0.4.1:", type=("build", "run"), when="@2.2.1:") + depends_on("r-vctrs@0.5.0:", type=("build", "run"), when="@2.3.2:") depends_on("r-withr", type=("build", "run"), when="@2.0.0:") - depends_on("r-ellipsis", type=("build", "run"), when="@2.1:") - depends_on("r-ellipsis", when="@:2.1.1") + depends_on("r-ellipsis", type=("build", "run"), when="@2.1.1") + depends_on("r-assertthat", type=("build", "run"), when="@:2.2.1") diff --git a/var/spack/repos/builtin/packages/r-deoptim/package.py b/var/spack/repos/builtin/packages/r-deoptim/package.py index b27cd80efc..fabff0249a 100644 --- a/var/spack/repos/builtin/packages/r-deoptim/package.py +++ b/var/spack/repos/builtin/packages/r-deoptim/package.py @@ -15,10 +15,11 @@ class RDeoptim(RPackage): cran = "DEoptim" + version("2.2-8", sha256="631eabdcf26ec25a759651f699db1971beca3ae193c7fbd1c63a78248fdbf54c") version("2.2-7", sha256="40ac7e15246f86c6d659ae90c91579a9d96e49558862c70ea43bc3c898ad9478") version("2.2-6", sha256="8c63397d83a067212d003ef3e639fd81f5f00bf61e3c271b4e4999031a69e2e1") version("2.2-5", sha256="ae12dedcd4a43994e811e7285f8c12bfdb688e7c99d65515cf7e8cb6db13955a") version("2.2-4", sha256="0a547784090d1e9b93efc53768110621f35bed3692864f6ce5c0dda2ebd6d482") version("2.2-3", sha256="af2120feea3a736ee7a5a93c6767d464abc0d45ce75568074b233405e73c9a5d") - depends_on("r-parallelly", type=("build", "run"), when="@2.2-7:") + depends_on("r-parallelly", type=("build", "run"), when="@2.2-7:2.2-7") diff --git a/var/spack/repos/builtin/packages/r-deoptimr/package.py b/var/spack/repos/builtin/packages/r-deoptimr/package.py index 1de8ccc07f..1d63653751 100644 --- a/var/spack/repos/builtin/packages/r-deoptimr/package.py +++ b/var/spack/repos/builtin/packages/r-deoptimr/package.py @@ -19,6 +19,7 @@ class RDeoptimr(RPackage): cran = "DEoptimR" + version("1.0-12", sha256="6136f98031bceaa691c5725222eca2d0f750a7b7fb60216480633635a9613d79") version("1.0-11", sha256="1874b30f4b75f9bfa891986598f1ebe1fce27fdced14f8f417d3535cac08165b") version("1.0-10", sha256="774f7ba0ac9c73aaab4567024b98afdb58098905726e72bceeeb9e380e782ad5") version("1.0-8", sha256="846911c1b2561a9fae73a8c60a21a5680963ebb0050af3c1f1147ae9a121e5ef") diff --git a/var/spack/repos/builtin/packages/r-devtools/package.py b/var/spack/repos/builtin/packages/r-devtools/package.py index fd5dd2d38e..3ad97f1195 100644 --- a/var/spack/repos/builtin/packages/r-devtools/package.py +++ b/var/spack/repos/builtin/packages/r-devtools/package.py @@ -104,23 +104,13 @@ class RDevtools(RPackage): depends_on("r-jsonlite@1.6.1:", type=("build", "run"), when="@2.3.0") depends_on("r-jsonlite@1.7.1:", type=("build", "run"), when="@2.3.2") depends_on("r-callr", type=("build", "run"), when="@2.0.0:") - depends_on("r-callr@3.4.3:", type=("build", "run"), when="@2.3.0:") - depends_on("r-callr@3.4.4:", type=("build", "run"), when="@2.3.2:") - depends_on("r-callr@3.4.4:", type=("build", "run"), when="@2.3.2:") - depends_on("r-callr@3.6.0:", type=("build", "run"), when="@2.4.3:") - depends_on("r-callr", when="@:2.4.3") - depends_on("r-callr", when="@:2.4.4") - depends_on("r-covr@3.5.0:", type=("build", "run"), when="@2.3.0:") - depends_on("r-covr@3.5.1:", type=("build", "run"), when="@2.3.2:") - depends_on("r-covr", when="@:2.4.3") - depends_on("r-covr", when="@:2.4.4") - depends_on("r-httr@0.4:", type=("build", "run")) - depends_on("r-httr@1.4.1:", type=("build", "run"), when="@2.3.0:") - depends_on("r-httr@1.4.2:", type=("build", "run"), when="@2.3.2:") - depends_on("r-httr", when="@:2.4.3") - depends_on("r-httr", when="@:2.4.4") + depends_on("r-callr@3.4.3:", type=("build", "run"), when="@2.3.0:2.4.3") + depends_on("r-callr@3.4.4:", type=("build", "run"), when="@2.3.2:2.4.3") + depends_on("r-callr@3.6.0:", type=("build", "run"), when="@2.4.3:2.4.3") + depends_on("r-covr@3.5.0:", type=("build", "run"), when="@2.3.0:2.3.2") + depends_on("r-covr@3.5.1:", type=("build", "run"), when="@2.3.2") + depends_on("r-httr@1.4.1:", type=("build", "run"), when="@2.3.0:2.4.3") + depends_on("r-httr@1.4.2:", type=("build", "run"), when="@2.3.2:2.4.3") depends_on("r-rstudioapi@0.7.0:", type=("build", "run")) - depends_on("r-rstudioapi@0.11:", type=("build", "run"), when="@2.3.0:") - depends_on("r-rstudioapi@0.13:", type=("build", "run"), when="@2.4.3:") - depends_on("r-rstudioapi", when="@:2.4.3") - depends_on("r-rstudioapi", when="@:2.4.4") + depends_on("r-rstudioapi@0.11:", type=("build", "run"), when="@2.3.0:2.4.3") + depends_on("r-rstudioapi@0.13:", type=("build", "run"), when="@2.4.3") diff --git a/var/spack/repos/builtin/packages/r-diagram/package.py b/var/spack/repos/builtin/packages/r-diagram/package.py new file mode 100644 index 0000000000..5fcede1769 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-diagram/package.py @@ -0,0 +1,26 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RDiagram(RPackage): + """Functions for Visualising Simple Graphs (Networks), Plotting Flow + Diagrams. + + Visualises simple graphs (networks) based on a transition matrix, utilities + to plot flow diagrams, visualising webs, electrical networks, etc. Support + for the book "A practical guide to ecological modelling - using R as a + simulation platform" by Karline Soetaert and Peter M.J. Herman (2009), + Springer. and the book "Solving Differential Equations in R" by Karline + Soetaert, Jeff Cash and Francesca Mazzia (2012), Springer. Includes + demo(flowchart), demo(plotmat), demo(plotweb).""" + + cran = "diagram" + + version("1.6.5", sha256="e9c03e7712e0282c5d9f2b760bafe2aac9e99a9723578d9e6369d60301f574e4") + + depends_on("r@2.01:", type=("build", "run")) + depends_on("r-shape", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-digest/package.py b/var/spack/repos/builtin/packages/r-digest/package.py index 190eb83d08..11ba384ed7 100644 --- a/var/spack/repos/builtin/packages/r-digest/package.py +++ b/var/spack/repos/builtin/packages/r-digest/package.py @@ -28,6 +28,7 @@ class RDigest(RPackage): cran = "digest" + version("0.6.31", sha256="5a284f490eaca6750f695f00a584cfca3f180ca1046ac1107202141149d431b9") version("0.6.30", sha256="7b8059943be7dba6053268dfcc229de1bb0b55db497b2943541a6abace076aa7") version("0.6.29", sha256="792c1f14a4c8047745152f5e45ce7351978af8d770c29d2ea39c7acd5d619cd9") version("0.6.28", sha256="4a328c75e95f8522fc07390d1dd00c19fb643f558e761a8aed04f99c1dc7db00") diff --git a/var/spack/repos/builtin/packages/r-distributional/package.py b/var/spack/repos/builtin/packages/r-distributional/package.py index fbe6748a45..ca3cc2777c 100644 --- a/var/spack/repos/builtin/packages/r-distributional/package.py +++ b/var/spack/repos/builtin/packages/r-distributional/package.py @@ -19,6 +19,7 @@ class RDistributional(RPackage): cran = "distributional" + version("0.3.2", sha256="c883d633398233aee5a8ca6b587687f765bdfe0732a84e4961e7f71ac0d008f8") version("0.3.1", sha256="727e56cbcf0c8a8adacca8030214ddbd14f68ee28d0aad716467bd68b027235f") version("0.3.0", sha256="fab36c7346617d8f2ca4b3cd0e3c9da93cb2f95fb7f102a3ae88670e694751d6") version("0.2.2", sha256="028e5a91aabe3a676eb7b7f3dc907f7f34735a123fe0d9adcabc03476504435f") @@ -32,5 +33,4 @@ class RDistributional(RPackage): depends_on("r-farver", type=("build", "run")) depends_on("r-digest", type=("build", "run")) depends_on("r-lifecycle", type=("build", "run")) - depends_on("r-ellipsis", type=("build", "run")) - depends_on("r-ellipsis", when="@:0.3.0") + depends_on("r-ellipsis", type=("build", "run"), when="@:0.3.0") diff --git a/var/spack/repos/builtin/packages/r-doby/package.py b/var/spack/repos/builtin/packages/r-doby/package.py new file mode 100644 index 0000000000..1562b9cb04 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-doby/package.py @@ -0,0 +1,31 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RDoby(RPackage): + """Groupwise Statistics, LSmeans, Linear Estimates, Utilities. + + Utility package containing: 1) Facilities for working with grouped data: + 'do' something to data stratified 'by' some variables. 2) LSmeans + (least-squares means), general linear estimates. 3) Restrict functions + to a smaller domain. 4) Miscellaneous other utilities.""" + + cran = "doBy" + + version("4.6.16", sha256="d5937eb57d293b0bc2e581ff2e1e628671cb4eacddc0b9574dc28a5316ecbbe7") + + depends_on("r@3.6.0:", type=("build", "run")) + depends_on("r-broom", type=("build", "run")) + depends_on("r-deriv", type=("build", "run")) + depends_on("r-dplyr", type=("build", "run")) + depends_on("r-ggplot2", type=("build", "run")) + depends_on("r-mass", type=("build", "run")) + depends_on("r-matrix", type=("build", "run")) + depends_on("r-magrittr", type=("build", "run")) + depends_on("r-microbenchmark", type=("build", "run")) + depends_on("r-pbkrtest@0.4-8.1:", type=("build", "run")) + depends_on("r-tibble", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-dplyr/package.py b/var/spack/repos/builtin/packages/r-dplyr/package.py index a4fd623917..230c4500e9 100644 --- a/var/spack/repos/builtin/packages/r-dplyr/package.py +++ b/var/spack/repos/builtin/packages/r-dplyr/package.py @@ -14,6 +14,7 @@ class RDplyr(RPackage): cran = "dplyr" + version("1.1.2", sha256="c220c38a3a44977c43eeae3d9aef90e8bb297150cad0993ea8d3cc13150096e3") version("1.0.10", sha256="3ab639f627b4e439052df18f193f0ccab223225a4ae2ff8c18aba4f9807e0f2b") version("1.0.9", sha256="e2e1f7312618b4e32ada9a1da79cef32eaec12acd408c973a6b069c6be4fb46b") version("1.0.7", sha256="d2fe3aedbce02fdddce09a8a80f85f5918a9d1f15f792ad4a98f254959d7123d") @@ -34,26 +35,34 @@ class RDplyr(RPackage): depends_on("r@3.2.0:", type=("build", "run"), when="@0.8.1:") depends_on("r@3.3.0:", type=("build", "run"), when="@1.0.3:") depends_on("r@3.4.0:", type=("build", "run"), when="@1.0.9:") + depends_on("r@3.5.0:", type=("build", "run"), when="@1.1.2:") depends_on("r-generics", type=("build", "run"), when="@1.0.3:") depends_on("r-glue@1.3.0:", type=("build", "run")) depends_on("r-glue@1.3.2:", type=("build", "run"), when="@1.0.3:") depends_on("r-lifecycle@0.2.0:", type=("build", "run"), when="@1.0.3:") depends_on("r-lifecycle@1.0.0:", type=("build", "run"), when="@1.0.5:") depends_on("r-lifecycle@1.0.1:", type=("build", "run"), when="@1.0.9:") + depends_on("r-lifecycle@1.0.3:", type=("build", "run"), when="@1.1.2:") + depends_on("r-cli@3.4.0:", type=("build", "run"), when="@1.1.2:") depends_on("r-magrittr@1.5:", type=("build", "run")) depends_on("r-r6", type=("build", "run")) depends_on("r-rlang@0.4.0:", type=("build", "run")) depends_on("r-rlang@0.4.9:", type=("build", "run"), when="@1.0.3:") depends_on("r-rlang@0.4.10:", type=("build", "run"), when="@1.0.5:") depends_on("r-rlang@1.0.2:", type=("build", "run"), when="@1.0.9:") + depends_on("r-rlang@1.1.0:", type=("build", "run"), when="@1.1.2:") depends_on("r-tibble@2.0.0:", type=("build", "run")) depends_on("r-tibble@2.1.3:", type=("build", "run"), when="@1.0.3:") + depends_on("r-tibble@3.2.0:", type=("build", "run"), when="@1.1.2:") depends_on("r-tidyselect@0.2.5:", type=("build", "run")) depends_on("r-tidyselect@1.1.0:", type=("build", "run"), when="@1.0.3:") depends_on("r-tidyselect@1.1.1:", type=("build", "run"), when="@1.0.9:") + depends_on("r-tidyselect@1.2.0:", type=("build", "run"), when="@1.1.2:") depends_on("r-vctrs@0.3.5:", type=("build", "run"), when="@1.0.3:") depends_on("r-vctrs@0.4.1:", type=("build", "run"), when="@1.0.9:") + depends_on("r-vctrs@0.6.0:", type=("build", "run"), when="@1.1.2:") depends_on("r-pillar@1.5.1:", type=("build", "run"), when="@1.0.6:") + depends_on("r-pillar@1.9.0:", type=("build", "run"), when="@1.1.2:") depends_on("r-assertthat@0.2.0:", type=("build", "run"), when="@:0.8.3") depends_on("r-bindrcpp@0.2.0:", type=("build", "run"), when="@:0.7.9") @@ -61,5 +70,4 @@ class RDplyr(RPackage): depends_on("r-rcpp@1.0.1:", type=("build", "run"), when="@:0.8.3") depends_on("r-bh", type=("build", "run"), when="@:0.8.3") depends_on("r-plogr@0.2.0:", type=("build", "run"), when="@0.7.0:0.8.3") - depends_on("r-ellipsis", type=("build", "run"), when="@1.0.3:") - depends_on("r-ellipsis", when="@:1.0.9") + depends_on("r-ellipsis", type=("build", "run"), when="@1.0.3:1.0.9") diff --git a/var/spack/repos/builtin/packages/r-dtplyr/package.py b/var/spack/repos/builtin/packages/r-dtplyr/package.py index ab53baaa14..7cca9a02ba 100644 --- a/var/spack/repos/builtin/packages/r-dtplyr/package.py +++ b/var/spack/repos/builtin/packages/r-dtplyr/package.py @@ -15,20 +15,26 @@ class RDtplyr(RPackage): cran = "dtplyr" + version("1.3.1", sha256="a5a9689a640b8bd1274519af220c33deaa3919654acac4ebdff1ff365cc8d6e5") version("1.2.2", sha256="f85928fe63701bc3a0cadf705ba660834a2aaeab37cf20addab406430e53e2d4") version("1.2.1", sha256="2640e9cde4eaa06f02cff29e3f2b99fdd08488df07ea2e6629b2ed6a8285d0f3") version("1.2.0", sha256="a6dedfb6dd80dfc1d29d005ab634c060b7bfda8cb49835ece84d3b7d12077414") version("1.1.0", sha256="99681b7285d7d5086e5595ca6bbeebf7f4e2ee358a32b694cd9d35916cdfc732") depends_on("r@3.3:", type=("build", "run")) - depends_on("r-crayon", type=("build", "run")) + depends_on("r-cli@3.4.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-data-table@1.12.4:", type=("build", "run")) depends_on("r-data-table@1.13.0:", type=("build", "run"), when="@1.2.0:") depends_on("r-dplyr@1.0.3:", type=("build", "run")) - depends_on("r-ellipsis", type=("build", "run")) + depends_on("r-dplyr@1.1.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-glue", type=("build", "run")) depends_on("r-lifecycle", type=("build", "run")) depends_on("r-rlang", type=("build", "run")) + depends_on("r-rlang@1.0.4:", type=("build", "run"), when="@1.3.1:") depends_on("r-tibble", type=("build", "run")) depends_on("r-tidyselect", type=("build", "run")) + depends_on("r-tidyselect@1.2.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-vctrs", type=("build", "run")) + depends_on("r-vctrs@0.4.1:", type=("build", "run"), when="@1.3.1:") + depends_on("r-crayon", type=("build", "run"), when="@:1.2.2") + depends_on("r-ellipsis", type=("build", "run"), when="@:1.2.2") diff --git a/var/spack/repos/builtin/packages/r-e1071/package.py b/var/spack/repos/builtin/packages/r-e1071/package.py index 12cf552573..4396eedc4c 100644 --- a/var/spack/repos/builtin/packages/r-e1071/package.py +++ b/var/spack/repos/builtin/packages/r-e1071/package.py @@ -16,6 +16,7 @@ class RE1071(RPackage): cran = "e1071" + version("1.7-13", sha256="da94e191af6e69aa0f9e3250d4b823674cc869339d914f761ebf2824177b6b2f") version("1.7-12", sha256="91e052d0a521db74a66df90adb28db601f2a2cca38b03dcad030ac2fdc5c5dcf") version("1.7-11", sha256="48c18e10e7cabc742d37b563672e2eddb6061f2378b69e5563be79ab9948d92f") version("1.7-9", sha256="9bf9a15e7ce0b9b1a57ce3048d29cbea7f2a5bb2e91271b1b6aaafe07c852226") diff --git a/var/spack/repos/builtin/packages/r-ecp/package.py b/var/spack/repos/builtin/packages/r-ecp/package.py index 7251edf5a7..557d65e3d5 100644 --- a/var/spack/repos/builtin/packages/r-ecp/package.py +++ b/var/spack/repos/builtin/packages/r-ecp/package.py @@ -19,8 +19,10 @@ class REcp(RPackage): cran = "ecp" + version("3.1.4", sha256="1b98bf25a7659517dc98d1b950fe2a5fed9ef8f750893b3a9e06e9c6d59cc04d") version("3.1.3", sha256="a80ab10bafe30cc96287b9220e44c4b4eda40f5dd0546e4d2a2e1baab514c058") version("3.1.1", sha256="d2ab194e22e6ab0168222fbccfcf2e25c6cd51a73edc959086b0c6e0a7410268") depends_on("r@3.0.0:", type=("build", "run")) + depends_on("r@3.00:", type=("build", "run"), when="@3.1.4:") depends_on("r-rcpp", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-ellipse/package.py b/var/spack/repos/builtin/packages/r-ellipse/package.py index 69e757977b..af03caa50b 100644 --- a/var/spack/repos/builtin/packages/r-ellipse/package.py +++ b/var/spack/repos/builtin/packages/r-ellipse/package.py @@ -18,6 +18,7 @@ class REllipse(RPackage): cran = "ellipse" + version("0.4.5", sha256="39c475851380deeb9361464f8f32fa2ee250f24604791c00680a54aaaaba8936") version("0.4.3", sha256="02ef2b11c3462a8b800332e522183f4c7c40c7d2d66c5174d5f3f6d8cc68a946") version("0.4.2", sha256="1719ce9a00b9ac4d56dbf961803085b892d3359726fda3567bb989ddfed9a5f2") version("0.4.1", sha256="1a9a9c52195b26c2b4d51ad159ab98aff7aa8ca25fdc6b2198818d1a0adb023d") diff --git a/var/spack/repos/builtin/packages/r-emmeans/package.py b/var/spack/repos/builtin/packages/r-emmeans/package.py index be6b62f9a1..5cc9aa0a6a 100644 --- a/var/spack/repos/builtin/packages/r-emmeans/package.py +++ b/var/spack/repos/builtin/packages/r-emmeans/package.py @@ -19,6 +19,7 @@ class REmmeans(RPackage): cran = "emmeans" + version("1.8.5", sha256="5c88b415b5a42d8c1aa63af090c4987326530ea6d0e60bab9b5fb7e99a982415") version("1.8.2", sha256="785973457d8a6547df489f87b62987d44a68c4b9018661d38ca11ee34e49d209") version("1.8.1-1", sha256="79fc5e44255427b038d0dbe2c9887d84984baacb11bb9a9078cd8d0dca2e6577") version("1.7.4-1", sha256="f7a33a2b54ad13d6e39ee6c58004f83a9edb06e8dc8282180440610eb18be721") @@ -33,6 +34,6 @@ class REmmeans(RPackage): depends_on("r-estimability@1.4.1:", type=("build", "run"), when="@1.8.1-1:") depends_on("r-numderiv", type=("build", "run")) depends_on("r-mvtnorm", type=("build", "run")) - depends_on("r-xtable@1.8-2:", type=("build", "run")) depends_on("r-plyr", type=("build", "run"), when="@:1.6") + depends_on("r-xtable@1.8-2:", type=("build", "run"), when="@:1.8.2") diff --git a/var/spack/repos/builtin/packages/r-energy/package.py b/var/spack/repos/builtin/packages/r-energy/package.py index 17832f3b8c..8a71ec4d84 100644 --- a/var/spack/repos/builtin/packages/r-energy/package.py +++ b/var/spack/repos/builtin/packages/r-energy/package.py @@ -21,6 +21,7 @@ class REnergy(RPackage): cran = "energy" + version("1.7-11", sha256="c29f8fb000c979d2504f6f6d3a99c773004f77d58793e7e2a5766155272b6511") version("1.7-10", sha256="543de4875c46cc90e711e71c45b082d962fbb5158a094f9f10d37d3f57e1bea7") version("1.7-9", sha256="68d0e0ed99f5a8a03858603ed36010a2f67b87a947dbcc65a9da2e08a2d3bad9") version("1.7-8", sha256="de08e8de037bb30068bbf0c1880b153a586d342304681f4ba103ab808c7f4789") @@ -29,6 +30,7 @@ class REnergy(RPackage): version("1.7-5", sha256="24c2cf080939f8f56cd9cda06d2dfc30d0389cd3ec7250af4f9a09a4c06b6996") depends_on("r@2.10:", type=("build", "run")) + depends_on("r@3.1:", type=("build", "run"), when="@1.7-11:") depends_on("r-rcpp@0.12.6:", type=("build", "run")) depends_on("r-boot", type=("build", "run")) depends_on("r-gsl", type=("build", "run"), when="@1.7-8:") diff --git a/var/spack/repos/builtin/packages/r-ergm/package.py b/var/spack/repos/builtin/packages/r-ergm/package.py index f57e1adb3a..c5325583e5 100644 --- a/var/spack/repos/builtin/packages/r-ergm/package.py +++ b/var/spack/repos/builtin/packages/r-ergm/package.py @@ -17,6 +17,7 @@ class RErgm(RPackage): cran = "ergm" + version("4.4.0", sha256="2db152cc7fdd71d6f0065603405f30bf5e206591da39b8f542178ec6d6126173") version("4.3.1", sha256="3ff63c81ea4061ac0c79247fcd2e614494624f7f1df57a4634927e7e90800ed3") version("4.2.3", sha256="35d15373d4a8445872eb3713c81c6c6ac34b72096e0cdb04292a468e65ae9288") version("4.2.2", sha256="ced92b0a32c78c85546d665c32fb3993fe77a3809aa88f43c3eee39e2577f2f0") @@ -29,9 +30,11 @@ class RErgm(RPackage): depends_on("r@3.5:", type=("build", "run"), when="@4.1.2:") depends_on("r@4.0:", type=("build", "run"), when="@4.2.1:") + depends_on("r@4.1:", type=("build", "run"), when="@4.4.0:") depends_on("r-network@1.15:", type=("build", "run")) depends_on("r-network@1.17:", type=("build", "run"), when="@4.1.2:") depends_on("r-network@1.17.0:", type=("build", "run"), when="@4.2.3:") + depends_on("r-network@1.18.0:", type=("build", "run"), when="@4.4.0:") depends_on("r-robustbase@0.93-5:", type=("build", "run")) depends_on("r-robustbase@0.93-7:", type=("build", "run"), when="@4.1.2:") depends_on("r-coda@0.19-2:", type=("build", "run")) @@ -48,6 +51,7 @@ class RErgm(RPackage): depends_on("r-statnet-common@4.5.0:", type=("build", "run"), when="@4.1.2:") depends_on("r-statnet-common@4.6.0:", type=("build", "run"), when="@4.2.1:") depends_on("r-statnet-common@4.7.0:", type=("build", "run"), when="@4.3.1:") + depends_on("r-statnet-common@4.8.0:", type=("build", "run"), when="@4.4.0:") depends_on("r-rle", type=("build", "run"), when="@3.11.0:") depends_on("r-rle@0.9.2:", type=("build", "run"), when="@4.1.2:") depends_on("r-purrr@0.3.2:", type=("build", "run"), when="@3.10.0:") @@ -58,14 +62,13 @@ class RErgm(RPackage): depends_on("r-tibble@2.1.1:", type=("build", "run"), when="@3.10.0:") depends_on("r-tibble@3.1.0:", type=("build", "run"), when="@4.1.2:") depends_on("r-magrittr@2.0.1:", type=("build", "run"), when="@4.2.1:") + depends_on("r-rdpack@2.4:", type=("build", "run"), when="@4.4.0:") depends_on("r-knitr", type=("build", "run"), when="@4.2.1:") depends_on("r-stringr", type=("build", "run"), when="@4.2.1:") depends_on("r-dplyr@0.8.0.1:", type=("build", "run"), when="@3.10.0:3.10.4") depends_on("r-lpsolve@5.6.13:", type=("build", "run"), when="@:3.11.0") - depends_on("r-digest", type=("build", "run"), when="@4.2.1:") - depends_on("r-digest", when="@:4.2.2") - depends_on("r-digest", when="@:4.2.3") + depends_on("r-digest", type=("build", "run"), when="@4.2.1:4.2.2") # The CRAN page list OpenMPI as a dependency but this is not a dependency # for using the package. If one wishes to use MPI, simply load an MPI diff --git a/var/spack/repos/builtin/packages/r-evaluate/package.py b/var/spack/repos/builtin/packages/r-evaluate/package.py index 9887559c19..5c4c7af18d 100644 --- a/var/spack/repos/builtin/packages/r-evaluate/package.py +++ b/var/spack/repos/builtin/packages/r-evaluate/package.py @@ -14,6 +14,7 @@ class REvaluate(RPackage): cran = "evaluate" + version("0.20", sha256="35f5d9e85603600b58960923d591c5ca1115153febba7c612867d8b5598afff0") version("0.18", sha256="7f4eecdc97ac286d5c7a39c454fe6798da38ef634bf9305c595faa8facb2bf36") version("0.17", sha256="49c743c94cb967911af0e5555861a3762cd840b98578882671b583cff86ba963") version("0.15", sha256="885aee530a8b6aa7fd3acaa1ecd94ab58b71038c879ca37405f948e105907c5d") diff --git a/var/spack/repos/builtin/packages/r-exactextractr/package.py b/var/spack/repos/builtin/packages/r-exactextractr/package.py index 341c9d947c..154a2a4b7b 100644 --- a/var/spack/repos/builtin/packages/r-exactextractr/package.py +++ b/var/spack/repos/builtin/packages/r-exactextractr/package.py @@ -14,6 +14,7 @@ class RExactextractr(RPackage): cran = "exactextractr" + version("0.9.1", sha256="f0cf367c25a45b09eda1d435c8c818590ff4de86162f675e3172821d1853f4a1") version("0.9.0", sha256="705a355534f427dc832af2a294aaf928c10c72d6335d38aed86da64d814eb18d") version("0.8.2", sha256="cc32ab3af8d881a7e7836c296ea42f3fdabf3373ec1de0b154dbfe9870ee8a74") version("0.7.2", sha256="2eb2b5eb2156cca875e7004b80687589217abd6fce5ebb7d8acb7fa71f6e6958") diff --git a/var/spack/repos/builtin/packages/r-expm/package.py b/var/spack/repos/builtin/packages/r-expm/package.py index 587e9ec466..ed1b2a8a3c 100644 --- a/var/spack/repos/builtin/packages/r-expm/package.py +++ b/var/spack/repos/builtin/packages/r-expm/package.py @@ -14,6 +14,7 @@ class RExpm(RPackage): cran = "expm" + version("0.999-7", sha256="28f249b914b8dd33eee16663fc793e57afd0e301e16067bf9f27fa8e591ba0f1") version("0.999-6", sha256="2c79912fd2e03fcf89c29f09555880934402fcb2359af8b4579d79b4f955addc") version("0.999-4", sha256="58d06427a08c9442462b00a5531e2575800be13ed450c5a1546261251e536096") version("0.999-3", sha256="511bac5860cc5b3888bca626cdf23241b6118eabcc82d100935386039e516412") diff --git a/var/spack/repos/builtin/packages/r-factominer/package.py b/var/spack/repos/builtin/packages/r-factominer/package.py index 6de0bf80f7..ecaa6fd068 100644 --- a/var/spack/repos/builtin/packages/r-factominer/package.py +++ b/var/spack/repos/builtin/packages/r-factominer/package.py @@ -20,6 +20,7 @@ class RFactominer(RPackage): cran = "FactoMineR" + version("2.8", sha256="c09086f7ae4c4855ed6f1e8303b497e250ab6cf101feb3db6c8a93510e5ff851") version("2.6", sha256="81261608c097b863e004a0c6cdc4bdfd6e7bf49c6ec20e211233eda2e5268f75") version("2.4", sha256="b9e3adce9a66b4daccc85fa67cb0769d6be230beeb126921b386ccde5db2e851") version("1.42", sha256="4cd9efb3681767c3bd48ddc3504ebead1493fcbbc0a9f759a00955b16c3481fa") diff --git a/var/spack/repos/builtin/packages/r-fansi/package.py b/var/spack/repos/builtin/packages/r-fansi/package.py index f659e56d98..3516a0307b 100644 --- a/var/spack/repos/builtin/packages/r-fansi/package.py +++ b/var/spack/repos/builtin/packages/r-fansi/package.py @@ -14,6 +14,7 @@ class RFansi(RPackage): cran = "fansi" + version("1.0.4", sha256="3163214e6c40922bbb495229259ed8ce1bebd98b77098a6936d234e43da9c49f") version("1.0.3", sha256="86a7b83d8c9d28baebbde310cd0b459d0950a9c7ff1a6276ce5858f6a89bc06a") version("1.0.2", sha256="d1e2cf2e10613abe19071e3dab7c564ebcf85ad13cbee25fa1999267af01b557") version("0.5.0", sha256="9d1bf8c316969c163abd3dd41cc1425b2671df9471fe806bf8783794a19ca54f") diff --git a/var/spack/repos/builtin/packages/r-fastmatrix/package.py b/var/spack/repos/builtin/packages/r-fastmatrix/package.py index 6436089d6d..a8738a4479 100644 --- a/var/spack/repos/builtin/packages/r-fastmatrix/package.py +++ b/var/spack/repos/builtin/packages/r-fastmatrix/package.py @@ -28,6 +28,7 @@ class RFastmatrix(RPackage): cran = "fastmatrix" + version("0.5", sha256="fb5f251a98425161e9dbbbb7edf95226725255b1474aad03ab046c7c6c6c3f12") version("0.4-1245", sha256="ee2e12b5dcda4585cca21f2c0ac144706f6fd26024586e91d622c6cd66d1d873") version("0.4-1", sha256="494a1aad38dcec28956eba8d095c964b20c5388dfb6dc2a23848ae37ea61cde5") version("0.3-8196", sha256="72fae07c627b995a091ccc3e14b2b2167474e3b1f14d723e87252538cf978fb6") diff --git a/var/spack/repos/builtin/packages/r-filehash/package.py b/var/spack/repos/builtin/packages/r-filehash/package.py index 1afb47c9c7..6803553cc4 100644 --- a/var/spack/repos/builtin/packages/r-filehash/package.py +++ b/var/spack/repos/builtin/packages/r-filehash/package.py @@ -21,9 +21,11 @@ class RFilehash(RPackage): cran = "filehash" + version("2.4-5", sha256="3b1ee2794dd61e525ee44db16611c65957691d77bb26ae481eba988bb55da22c") version("2.4-3", sha256="f394e2c93233e8ad1c104562ea9349855dc8e303131f559cd59834f9aa3e41bd") version("2.4-2", sha256="b6d056f75d45e315943a4618f5f62802612cd8931ba3f9f474b595140a3cfb93") version("2.4-1", sha256="d0e087d338d89372c251c18fc93b53fb24b1750ea154833216ff16aff3b1eaf4") version("2.3", sha256="63b098df9a2cf4aac862cd7bf86ae516e00852a8ad0f3090f9721b6b173e6edb") depends_on("r@3.0.0:", type=("build", "run")) + depends_on("r-digest", type=("build", "run"), when="@2.4-5:") diff --git a/var/spack/repos/builtin/packages/r-findpython/package.py b/var/spack/repos/builtin/packages/r-findpython/package.py index 9c12992aa4..c74bbc0751 100644 --- a/var/spack/repos/builtin/packages/r-findpython/package.py +++ b/var/spack/repos/builtin/packages/r-findpython/package.py @@ -11,6 +11,7 @@ class RFindpython(RPackage): cran = "findpython" + version("1.0.8", sha256="0f8a90cbafd4949c0333a86808383a358fb7ec3268953d8a4887d5d22264cdb7") version("1.0.7", sha256="59f904b9c2ec84b589380de59d13afbf14d1ec3b670e3a07e820298aaf04c149") version("1.0.5", sha256="3e9a21988cb78833769b02680d128a0cc01bcb41aa9c9725ab1742f349759145") version("1.0.4", sha256="a58fb46d53d3bdea1e00b2f4f9bdb5e98be9329ea9d8e2fe150d91462e6bccfd") diff --git a/var/spack/repos/builtin/packages/r-fitdistrplus/package.py b/var/spack/repos/builtin/packages/r-fitdistrplus/package.py index 74f2a72150..e427d0f8c8 100644 --- a/var/spack/repos/builtin/packages/r-fitdistrplus/package.py +++ b/var/spack/repos/builtin/packages/r-fitdistrplus/package.py @@ -22,6 +22,7 @@ class RFitdistrplus(RPackage): cran = "fitdistrplus" + version("1.1-11", sha256="26274f2b710b2417a8bca314d400abf320d4ccf0387ad082743056699501b53d") version("1.1-8", sha256="f3c72310f40773b3839a9506c3cb781d044e09b94f2f38d332bb24e5f9960f5a") version("1.1-6", sha256="17c2990041a3bb7479f3c3a6d13d96c989db8eaddab17eff7e1fbe172a5b96be") version("1.1-3", sha256="776d5456e14398e44b78b3d7db526559bb7a3537e546a29c88aa192141c756de") diff --git a/var/spack/repos/builtin/packages/r-flexmix/package.py b/var/spack/repos/builtin/packages/r-flexmix/package.py index 5397284ed4..9580d655b6 100644 --- a/var/spack/repos/builtin/packages/r-flexmix/package.py +++ b/var/spack/repos/builtin/packages/r-flexmix/package.py @@ -17,6 +17,7 @@ class RFlexmix(RPackage): cran = "flexmix" + version("2.3-19", sha256="adf5a40cbb6d45e3652c1666cb3ccdb9654e501fd685c091cad0686e62bc12e9") version("2.3-18", sha256="462201ef49088845c83083e4ed6725cf069aafb12a814041618aaf09ebd69b51") version("2.3-17", sha256="36019b7833032409ac61720dd625fa5a581a1d8bcba9045b04979c90907b5649") version("2.3-15", sha256="ba444c0bfe33ab87d440ab590c06b03605710acd75811c1622253171bb123f43") diff --git a/var/spack/repos/builtin/packages/r-fnn/package.py b/var/spack/repos/builtin/packages/r-fnn/package.py index c65de62750..1599e8227c 100644 --- a/var/spack/repos/builtin/packages/r-fnn/package.py +++ b/var/spack/repos/builtin/packages/r-fnn/package.py @@ -15,6 +15,7 @@ class RFnn(RPackage): cran = "FNN" + version("1.1.3.2", sha256="d701a13487979ebb07a071f4cc83fcf4daea5832d1f3923bce1e0d671dfe0e87") version("1.1.3.1", sha256="52b0e20611481a95bced40be4126f44b002fd3a9c4c9674bb34db4e1e3b5be5a") version("1.1.3", sha256="de763a25c9cfbd19d144586b9ed158135ec49cf7b812938954be54eb2dc59432") version("1.1.2.2", sha256="b51a60fbbeff58c48cc90c2023c48972d5082d68efd02284c17ccd9820986326") diff --git a/var/spack/repos/builtin/packages/r-fontawesome/package.py b/var/spack/repos/builtin/packages/r-fontawesome/package.py index ab743a0330..195606b65e 100644 --- a/var/spack/repos/builtin/packages/r-fontawesome/package.py +++ b/var/spack/repos/builtin/packages/r-fontawesome/package.py @@ -17,10 +17,12 @@ class RFontawesome(RPackage): cran = "fontawesome" + version("0.5.1", sha256="f4ebbbe2ee8d2e2c0342b72095cfe668bd9800ea6c4bf7180300544bde7e566c") version("0.4.0", sha256="760a0bc5b50ddbce1160b123f3b3d76342167519d75641dc2c5b952fa8d4242f") version("0.3.0", sha256="4deefcf4d4580d84213f863351c2a23c39adbd2f8762d7477ec2faa8235a1a31") version("0.2.2", sha256="572db64d1b3c9be301935e0ca7baec69f3a6e0aa802e23f1f224b3724259df64") depends_on("r@3.3.0:", type=("build", "run")) depends_on("r-rlang@0.4.10:", type=("build", "run")) + depends_on("r-rlang@1.0.6:", type=("build", "run"), when="@0.5.1:") depends_on("r-htmltools@0.5.1.1:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-forcats/package.py b/var/spack/repos/builtin/packages/r-forcats/package.py index 1f3a902515..960fd7e1cd 100644 --- a/var/spack/repos/builtin/packages/r-forcats/package.py +++ b/var/spack/repos/builtin/packages/r-forcats/package.py @@ -16,6 +16,7 @@ class RForcats(RPackage): cran = "forcats" + version("1.0.0", sha256="c5bb157909d92e1e1a427c0dc5cb358ea00a43a14918a9088fa4f6630962254e") version("0.5.2", sha256="14a60a43183f82da0fbf42633cee446d21dcbb98a8c37361b5c8061a4da86141") version("0.5.1", sha256="c4fb96e874e2bedaa8a1aa32ea22abdee7906d93b5c5c7b42c0894c0c5b6a289") version("0.5.0", sha256="8f960e789333ec597ddf2d653a64e330f03b86f465e9b71f6779f227355d90c4") @@ -27,11 +28,12 @@ class RForcats(RPackage): depends_on("r@3.2:", type=("build", "run"), when="@0.5.0:") depends_on("r@3.4:", type=("build", "run"), when="@0.5.2:") depends_on("r-cli", type=("build", "run"), when="@0.5.2:") - depends_on("r-ellipsis", type=("build", "run"), when="@0.4.0:") + depends_on("r-cli@3.4.0:", type=("build", "run"), when="@1.0.0:") depends_on("r-lifecycle", type=("build", "run"), when="@0.5.2:") depends_on("r-glue", type=("build", "run"), when="@0.5.2:") depends_on("r-magrittr", type=("build", "run")) depends_on("r-rlang", type=("build", "run"), when="@0.4.0:") depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@0.5.2:") depends_on("r-tibble", type=("build", "run")) - depends_on("r-withr", type=("build", "run"), when="@0.5.2:") + depends_on("r-ellipsis", type=("build", "run"), when="@0.4.0:0.5.2") + depends_on("r-withr", type=("build", "run"), when="@0.5.2:0.5.2") diff --git a/var/spack/repos/builtin/packages/r-forecast/package.py b/var/spack/repos/builtin/packages/r-forecast/package.py index 1f03e306d4..36058dd915 100644 --- a/var/spack/repos/builtin/packages/r-forecast/package.py +++ b/var/spack/repos/builtin/packages/r-forecast/package.py @@ -15,6 +15,7 @@ class RForecast(RPackage): cran = "forecast" + version("8.21", sha256="fdd131795a9d3fb399d76a9aa66a0c276637caaa9ec0c75fbe386189d005c6c2") version("8.18", sha256="5920baa8d9d81988000d0e2edcea61c05126b5cb923cb5921a6fcd7bc312d8dd") version("8.16", sha256="9f01eb895a883a7e1e23725b167b46edc1b0b152fd4120278aaa5f7b2621767f") version("8.15", sha256="c73aabed083095b457ed875c240716686fbd41d1cbafa116b7b890a54b919174") diff --git a/var/spack/repos/builtin/packages/r-foreign/package.py b/var/spack/repos/builtin/packages/r-foreign/package.py index db4a0c23e9..c4d21c0471 100644 --- a/var/spack/repos/builtin/packages/r-foreign/package.py +++ b/var/spack/repos/builtin/packages/r-foreign/package.py @@ -16,6 +16,7 @@ class RForeign(RPackage): cran = "foreign" + version("0.8-84", sha256="17edf302c7568a122dc496a61a4a886ef7c02224a235d945b473611c79c98549") version("0.8-83", sha256="87eae73f780b6bbcf0a45b3e21d1c87be0404aa2d5b455df92ab45516030721b") version("0.8-82", sha256="f8ed0684d59bec7f3a39cde1aa5ec7b3e6e36aaecacb28120c9c54f7b13f80fb") version("0.8-81", sha256="1ae8f9f18f2a037697fa1a9060417ff255c71764f0145080b2bd23ba8262992c") diff --git a/var/spack/repos/builtin/packages/r-formula/package.py b/var/spack/repos/builtin/packages/r-formula/package.py index c1eaf449a7..109b0208be 100644 --- a/var/spack/repos/builtin/packages/r-formula/package.py +++ b/var/spack/repos/builtin/packages/r-formula/package.py @@ -16,6 +16,7 @@ class RFormula(RPackage): cran = "Formula" + version("1.2-5", sha256="86254674600d64e18b65d52f42d7ebfc217c8e1945cb63ac06da22cbf04d355c") version("1.2-4", sha256="cb70e373b5ed2fc8450937fb3321d37dfd22dcc6f07cb872a419d51205125caf") version("1.2-3", sha256="1411349b20bd09611a9fd0ee6d15f780c758ad2b0e490e908facb49433823872") version("1.2-2", sha256="8def4600fb7457d38db8083733477501b54528974aa216e4adf8871bff4aa429") diff --git a/var/spack/repos/builtin/packages/r-fpc/package.py b/var/spack/repos/builtin/packages/r-fpc/package.py index 8914dd89f1..562ba15e89 100644 --- a/var/spack/repos/builtin/packages/r-fpc/package.py +++ b/var/spack/repos/builtin/packages/r-fpc/package.py @@ -28,12 +28,14 @@ class RFpc(RPackage): cran = "fpc" + version("2.2-10", sha256="99b4548f2eca1a092a31bc2fa4e4bd1d6b50fdfacf3218588c879ceec99147d2") version("2.2-9", sha256="29b0006e96c8645645d215d3378551bd6525aaf45abde2d9f12933cf6e75fa38") version("2.2-3", sha256="8100a74e6ff96b1cd65fd22494f2d200e54ea5ea533cfca321fa494914bdc3b7") version("2.2-2", sha256="b6907019eb161d5c8c814cf02a4663cc8aae6322699932881ce5b02f45ecf8d3") version("2.1-10", sha256="5d17c5f475c3f24a4809678cbc6186a357276240cf7fcb00d5670b9e68baa096") depends_on("r@2.0.0:", type=("build", "run")) + depends_on("r@2.0:", type=("build", "run"), when="@2.2-10:") depends_on("r-mass", type=("build", "run")) depends_on("r-cluster", type=("build", "run")) depends_on("r-mclust", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-fs/package.py b/var/spack/repos/builtin/packages/r-fs/package.py index 77cbbb1adf..55ae18434c 100644 --- a/var/spack/repos/builtin/packages/r-fs/package.py +++ b/var/spack/repos/builtin/packages/r-fs/package.py @@ -14,11 +14,13 @@ class RFs(RPackage): cran = "fs" + version("1.6.2", sha256="548b7c0ed5ab26dc4fbd88707ae12987bcaef834dbc6de4e17d453846dc436b2") version("1.5.2", sha256="35cad1781d6d17c1feb56adc4607079c6844b63794d0ce1e74bb18dbc11e1987") version("1.5.0", sha256="36df1653571de3c628a4f769c4627f6ac53d0f9e4106d9d476afb22ae9603897") version("1.3.1", sha256="d6934dca8f835d8173e3fb9fd4d5e2740c8c04348dd2bcc57df1b711facb46bc") depends_on("r@3.1:", type=("build", "run")) + depends_on("r@3.4:", type=("build", "run"), when="@1.6.2:") depends_on("gmake", type="build") depends_on("r-rcpp", type=("build", "run"), when="@:1.3.1") diff --git a/var/spack/repos/builtin/packages/r-future/package.py b/var/spack/repos/builtin/packages/r-future/package.py index f822a0a370..ef5cfcc18f 100644 --- a/var/spack/repos/builtin/packages/r-future/package.py +++ b/var/spack/repos/builtin/packages/r-future/package.py @@ -26,6 +26,7 @@ class RFuture(RPackage): cran = "future" + version("1.32.0", sha256="d5bb74512d069745184dd580a36449dc0b50d95b1cbbbc1605db82de596f2f76") version("1.29.0", sha256="856d1fd51d2f998c6572490c49fdcc27e5f3e0c1ade75eecdbf64a2cd0954373") version("1.28.0", sha256="6fdda66acd9a255e5baa70ff5dacd3c57ab2ecc2d87fd6abeebdfb939c051bf6") version("1.26.1", sha256="a35c0bdae86265ebe86119231802b6fbf7b1d533b57cb423d8483fbe779390d5") @@ -48,3 +49,4 @@ class RFuture(RPackage): depends_on("r-parallelly@1.26.1:", type=("build", "run"), when="@1.22.0:") depends_on("r-parallelly@1.30.0:", type=("build", "run"), when="@1.24.0:") depends_on("r-parallelly@1.32.1:", type=("build", "run"), when="@1.28.0:") + depends_on("r-parallelly@1.34.0:", type=("build", "run"), when="@1.32.0:") diff --git a/var/spack/repos/builtin/packages/r-gamlss/package.py b/var/spack/repos/builtin/packages/r-gamlss/package.py index c7b06fad71..63d6c54362 100644 --- a/var/spack/repos/builtin/packages/r-gamlss/package.py +++ b/var/spack/repos/builtin/packages/r-gamlss/package.py @@ -18,6 +18,7 @@ class RGamlss(RPackage): cran = "gamlss" + version("5.4-12", sha256="9f791039f7e5c3cf3f6a2da955994a8c41c43044a2d77d99b289e4f82118a6f0") version("5.4-3", sha256="6619d4fdc183ab492615d44961a126c827d18db20a0d59362e54de877f0a3076") version("5.3-4", sha256="72707187471fd35c5379ae8c9b7b0ca87e302557f09cb3979d1cdb2e2500b01a") version("5.2-0", sha256="d3927547109064cbe7b0f955144f53204b5dc86c6b2dbc8f0551a74140ab02e1") diff --git a/var/spack/repos/builtin/packages/r-gargle/package.py b/var/spack/repos/builtin/packages/r-gargle/package.py index 95404eb6d6..160f836284 100644 --- a/var/spack/repos/builtin/packages/r-gargle/package.py +++ b/var/spack/repos/builtin/packages/r-gargle/package.py @@ -16,18 +16,24 @@ class RGargle(RPackage): cran = "gargle" + version("1.4.0", sha256="8e0f1edf5595d4fd27bd92f98af1cc0c1349975803d9d6f3ff0c25ee2440498b") version("1.2.1", sha256="f367e2c82f403167ae84058303a4fb0402664558a2abf0b495474a7ef1a2f020") version("1.2.0", sha256="4d46ca2933f19429ca5a2cfe47b4130a75c7cd9931c7758ade55bac0c091d73b") depends_on("r@3.3:", type=("build", "run")) depends_on("r@3.5:", type=("build", "run"), when="@1.2.1:") depends_on("r-cli@3.0.0:", type=("build", "run")) + depends_on("r-cli@3.0.1:", type=("build", "run"), when="@1.4.0:") depends_on("r-fs@1.3.1:", type=("build", "run")) depends_on("r-glue@1.3.0:", type=("build", "run")) depends_on("r-httr@1.4.0:", type=("build", "run")) + depends_on("r-httr@1.4.5:", type=("build", "run"), when="@1.4.0:") depends_on("r-jsonlite", type=("build", "run")) + depends_on("r-openssl", type=("build", "run"), when="@1.4.0:") + depends_on("r-lifecycle", type=("build", "run"), when="@1.4.0:") depends_on("r-rappdirs", type=("build", "run")) depends_on("r-rlang@0.4.9:", type=("build", "run")) depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@1.2.1:") - depends_on("r-rstudioapi", type=("build", "run")) + depends_on("r-rlang@1.1.0:", type=("build", "run"), when="@1.4.0:") depends_on("r-withr", type=("build", "run")) + depends_on("r-rstudioapi", type=("build", "run"), when="@:1.2.1") diff --git a/var/spack/repos/builtin/packages/r-gdalutilities/package.py b/var/spack/repos/builtin/packages/r-gdalutilities/package.py index f4d099032a..ee93c6577d 100644 --- a/var/spack/repos/builtin/packages/r-gdalutilities/package.py +++ b/var/spack/repos/builtin/packages/r-gdalutilities/package.py @@ -23,7 +23,9 @@ class RGdalutilities(RPackage): cran = "gdalUtilities" + version("1.2.4", sha256="56d2582324977f2ae0a8bc42f740cd93b22c71eb8ee6a68b5b07083e409db8c7") version("1.2.1", sha256="8f5dcc0c077bf972da9d574c62c992935311afb76a97f03ace719bc6da214a9c") version("1.2.0", sha256="ead446f7f77f952b72b9ed80c5e415cb9d8d30cfb2439c8d1a8156fa55e2b65b") depends_on("r-sf", type=("build", "run")) + depends_on("r-sf@1.0-11:", type=("build", "run"), when="@1.2.4:") diff --git a/var/spack/repos/builtin/packages/r-geiger/package.py b/var/spack/repos/builtin/packages/r-geiger/package.py index 8ddb074aff..bb9ed694e5 100644 --- a/var/spack/repos/builtin/packages/r-geiger/package.py +++ b/var/spack/repos/builtin/packages/r-geiger/package.py @@ -14,6 +14,7 @@ class RGeiger(RPackage): cran = "geiger" + version("2.0.11", sha256="dcc5a0a988439110078867e0aaf09b048e27db7f02e4cbdfe35783611fde3f69") version("2.0.10", sha256="2895cfb73fb91764be2ec3f931e4f3b2e75ae00a1431af4b40dc90e7c0693be0") version("2.0.9", sha256="c8c8c871b4eb03ba1dc2fd49db304741b16ede99fe49bb5f9b2c220b9e2a8066") version("2.0.7", sha256="d200736c4ad7ed4bc55a13e7d0126ddc7fed88e245cd5706d4692aaa437e9596") @@ -33,3 +34,4 @@ class RGeiger(RPackage): depends_on("r-ncbit", type=("build", "run")) depends_on("r-colorspace", type=("build", "run")) depends_on("r-phytools@0.7.31:", type=("build", "run"), when="@2.0.7:") + depends_on("r-phytools@1.5-1:", type=("build", "run"), when="@2.0.11:") diff --git a/var/spack/repos/builtin/packages/r-gensa/package.py b/var/spack/repos/builtin/packages/r-gensa/package.py index 04fd3343d9..009aba764c 100644 --- a/var/spack/repos/builtin/packages/r-gensa/package.py +++ b/var/spack/repos/builtin/packages/r-gensa/package.py @@ -14,6 +14,7 @@ class RGensa(RPackage): cran = "GenSA" + version("1.1.8", sha256="375e87541eb6b098584afccab361dc28ff09d03cf1d062ff970208e294eca216") version("1.1.7", sha256="9d99d3d0a4b7770c3c3a6de44206811272d78ab94481713a8c369f7d6ae7b80f") depends_on("r@2.12.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-geometries/package.py b/var/spack/repos/builtin/packages/r-geometries/package.py index 59e0d0c0f1..984da306d0 100644 --- a/var/spack/repos/builtin/packages/r-geometries/package.py +++ b/var/spack/repos/builtin/packages/r-geometries/package.py @@ -16,6 +16,8 @@ class RGeometries(RPackage): cran = "geometries" + version("0.2.2", sha256="32d3063de0f8a751382788f85ebaee5f39d68e486253c159d553bb3d72d69141") version("0.2.0", sha256="8cf5094f3c2458fef5d755799c766afd27c66cd1c292574a6ab532d608360314") depends_on("r-rcpp", type=("build", "run")) + depends_on("r-rcpp@1.0.10:", type=("build", "run"), when="@0.2.2:") diff --git a/var/spack/repos/builtin/packages/r-geometry/package.py b/var/spack/repos/builtin/packages/r-geometry/package.py index 25bda4811e..779b62be63 100644 --- a/var/spack/repos/builtin/packages/r-geometry/package.py +++ b/var/spack/repos/builtin/packages/r-geometry/package.py @@ -21,6 +21,7 @@ class RGeometry(RPackage): cran = "geometry" + version("0.4.7", sha256="96204205f51b4d63c2e7a7b00365def27d131f3c9ec66db56b510046e5d2013b") version("0.4.6.1", sha256="52c87a43cdf414c08b8183441c44497039cba92a9cff719debf09ad8d5d7f472") version("0.4.6", sha256="910465a8c8043faca73bcc7c81c9249b9938677ee6649468003b438a6503f5d8") diff --git a/var/spack/repos/builtin/packages/r-geomorph/package.py b/var/spack/repos/builtin/packages/r-geomorph/package.py index fa621ddb49..18e1003be5 100644 --- a/var/spack/repos/builtin/packages/r-geomorph/package.py +++ b/var/spack/repos/builtin/packages/r-geomorph/package.py @@ -16,6 +16,7 @@ class RGeomorph(RPackage): cran = "geomorph" + version("4.0.5", sha256="900d41f95a610b026763797f290ce94c10827a59b05030ed01c841c59264313b") version("4.0.4", sha256="dfded29070bc06bf1dc0d6fedaa16fea9f8eef76f0a7443a11f2835c328c6b0a") version("4.0.3", sha256="8fd77bedf2ee85f1e4aaac4b22253810d12dba0b79d78d67695d237b7184e263") version("4.0.1", sha256="9d54fba96dd8b8f2dcc8d0e4c427f6232bed1934da41f25084c16ec0b2c71117") @@ -28,10 +29,10 @@ class RGeomorph(RPackage): depends_on("r+X", type=("build", "run")) depends_on("r@3.1.0:", type=("build", "run")) depends_on("r@3.5.0:", type=("build", "run"), when="@3.3.2:") + depends_on("r-matrix", type=("build", "run")) depends_on("r-rrpp", type=("build", "run"), when="@3.0.7:") depends_on("r-rrpp@1.0.0:", type=("build", "run"), when="@4.0.1:") depends_on("r-rgl", type=("build", "run")) - depends_on("r-matrix", type=("build", "run"), when="@:3.1.1,4.0.1:") depends_on("r-jpeg", type=("build", "run")) depends_on("r-ape", type=("build", "run")) depends_on("r-ggplot2", type=("build", "run"), when="@4.0.1:") diff --git a/var/spack/repos/builtin/packages/r-geor/package.py b/var/spack/repos/builtin/packages/r-geor/package.py index c60b6d2a82..42179c4c4f 100644 --- a/var/spack/repos/builtin/packages/r-geor/package.py +++ b/var/spack/repos/builtin/packages/r-geor/package.py @@ -24,5 +24,4 @@ class RGeor(RPackage): depends_on("r-mass", type=("build", "run")) depends_on("r-sp", type=("build", "run")) depends_on("r-splancs", type=("build", "run")) - depends_on("r-randomfields", type=("build", "run")) - depends_on("r-randomfields", when="@:1.8-1") + depends_on("r-randomfields", type=("build", "run"), when="@:1.8-1") diff --git a/var/spack/repos/builtin/packages/r-geosphere/package.py b/var/spack/repos/builtin/packages/r-geosphere/package.py index 401926b213..68012887a2 100644 --- a/var/spack/repos/builtin/packages/r-geosphere/package.py +++ b/var/spack/repos/builtin/packages/r-geosphere/package.py @@ -15,10 +15,12 @@ class RGeosphere(RPackage): cran = "geosphere" + version("1.5-18", sha256="99ff6ff050cc8c2d565b6bb1488607fc7950a6d448930f8d9642eccefbc6dac0") version("1.5-14", sha256="f2c3a4ae1c87c86c123d48f134721c809fb33675cb5cd0959080049eabdbe42d") version("1.5-10", sha256="56cd4f787101e2e18f19ddb83794154b58697e63cad81168f0936f60ab7eb497") version("1.5-7", sha256="9d9b555e2d59a5ae174ae654652121f169fbc3e9cf66c2491bfbe0684b6dd8a0") version("1.5-5", sha256="8b6fe012744fc45b88e0ef6f20e60e103ef013e761e99dcff3f9dceeedbdce6d") depends_on("r@3.0.0:", type=("build", "run")) + depends_on("r-rcpp", type=("build", "run"), when="@1.5-18:") depends_on("r-sp", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-gert/package.py b/var/spack/repos/builtin/packages/r-gert/package.py index aec497e357..eb57fcf821 100644 --- a/var/spack/repos/builtin/packages/r-gert/package.py +++ b/var/spack/repos/builtin/packages/r-gert/package.py @@ -17,6 +17,7 @@ class RGert(RPackage): cran = "gert" + version("1.9.2", sha256="42ca1b4bcafb1fdbbc7f54df0ee4476ecd19e9e7d563b53fe7064e0086ab665e") version("1.9.1", sha256="751d18760a08ae00b8de73dc3e564cf4e76b1f47c7179101320e1b70152e1fdd") version("1.6.0", sha256="8c440aeebabf1cb3b57124ec9280e0f46b2ab56f2bca07d72b5c7a7f4edc2964") version("1.5.0", sha256="9fc330893b0cb43360905fd204e674813e1906449a95dc4037fe8802bd74a2ae") diff --git a/var/spack/repos/builtin/packages/r-ggbeeswarm/package.py b/var/spack/repos/builtin/packages/r-ggbeeswarm/package.py index 2d23d4621f..32b70de08b 100644 --- a/var/spack/repos/builtin/packages/r-ggbeeswarm/package.py +++ b/var/spack/repos/builtin/packages/r-ggbeeswarm/package.py @@ -15,9 +15,13 @@ class RGgbeeswarm(RPackage): cran = "ggbeeswarm" + version("0.7.1", sha256="f41550335149bc2122fed0dd280d980cecd02ace79e042d5e03c1f102200ac92") version("0.6.0", sha256="bbac8552f67ff1945180fbcda83f7f1c47908f27ba4e84921a39c45d6e123333") depends_on("r@3.0.0:", type=("build", "run")) + depends_on("r@3.5.0:", type=("build", "run"), when="@0.7.1:") depends_on("r-beeswarm", type=("build", "run")) + depends_on("r-lifecycle", type=("build", "run"), when="@0.7.1:") depends_on("r-ggplot2@2.0:", type=("build", "run")) + depends_on("r-ggplot2@3.3.0:", type=("build", "run"), when="@0.7.1:") depends_on("r-vipor", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-ggfun/package.py b/var/spack/repos/builtin/packages/r-ggfun/package.py index b30ae0e8c5..20aad57768 100644 --- a/var/spack/repos/builtin/packages/r-ggfun/package.py +++ b/var/spack/repos/builtin/packages/r-ggfun/package.py @@ -14,6 +14,7 @@ class RGgfun(RPackage): cran = "ggfun" + version("0.0.9", sha256="5c740e9d1e73b77658f41ed65e21492f4e71b12c7c9ff4b9e52ebf5f8f197612") version("0.0.8", sha256="9471a12fc7af203a419767b845e6b6c1e63c080370cb8f2dac80187194122273") version("0.0.7", sha256="a83b5fb95f61e366f96d6d8e6b04dafff8e885e7c80c913614876b50ebb8e174") version("0.0.6", sha256="59989ed260fcc71cd95487cf3493113a2d8a47d273d9a2f3e5e842609620511b") diff --git a/var/spack/repos/builtin/packages/r-ggmap/package.py b/var/spack/repos/builtin/packages/r-ggmap/package.py index 2348f205c9..49456489d3 100644 --- a/var/spack/repos/builtin/packages/r-ggmap/package.py +++ b/var/spack/repos/builtin/packages/r-ggmap/package.py @@ -16,6 +16,7 @@ class RGgmap(RPackage): cran = "ggmap" + version("3.0.2", sha256="ba5fe3975fd4ca1a5fbda4910c9705ac2edacec75c658177edaf87f1c55cdcae") version("3.0.1", sha256="fc824b547f1fd0b52b6fbd18a82fe6f29f97b1f592e2c61baf4686ddfd47e35d") version("3.0.0", sha256="96c24ffdc0710d0633ac4721d599d2c06f43a29c59d1e85c94ff0af30dfdb58d") version("2.6.2", sha256="4e9cf53ab108fc70805d971dadb69b26fe67ea289c23c38adf6e30b198379d90") @@ -45,5 +46,4 @@ class RGgmap(RPackage): depends_on("r-reshape2", type=("build", "run"), when="@:2.6.2") depends_on("r-mapproj", type=("build", "run"), when="@:2.6.2") depends_on("r-geosphere", type=("build", "run"), when="@:2.6.2") - depends_on("r-rjson", type=("build", "run")) - depends_on("r-rjson", when="@:3.0.0") + depends_on("r-rjson", type=("build", "run"), when="@:3.0.0") diff --git a/var/spack/repos/builtin/packages/r-ggplot2/package.py b/var/spack/repos/builtin/packages/r-ggplot2/package.py index 0653bb47c2..3e7aac2437 100644 --- a/var/spack/repos/builtin/packages/r-ggplot2/package.py +++ b/var/spack/repos/builtin/packages/r-ggplot2/package.py @@ -16,6 +16,7 @@ class RGgplot2(RPackage): cran = "ggplot2" + version("3.4.2", sha256="70230aa70a2c6f844fc41dd93e5f62af6859dfed390026ae58f223637e5283ca") version("3.4.0", sha256="a82f9e52f974389439765f71a8206ec26e3be30a8864d2c784d5ea8abcb0473e") version("3.3.6", sha256="bfcb4eb92a0fcd3fab713aca4bb25e916e05914f2540271a45522ad7e43943a9") version("3.3.5", sha256="b075294faf3af31b18e415f260c62d6000b218770e430484fe38819bdc3224ea") @@ -33,11 +34,13 @@ class RGgplot2(RPackage): depends_on("r-gtable@0.1.1:", type=("build", "run")) depends_on("r-isoband", type=("build", "run"), when="@3.3.3:") depends_on("r-lifecycle@1.0.1:", type=("build", "run"), when="@3.4.0:") + depends_on("r-lifecycle@unknown:", type=("build", "run"), when="@3.4.2:") depends_on("r-mass", type=("build", "run")) depends_on("r-mgcv", type=("build", "run"), when="@3.2.0:") depends_on("r-rlang@0.3.0:", type=("build", "run"), when="@3.0.0:") depends_on("r-rlang@0.4.10:", type=("build", "run"), when="@3.3.4:") depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@3.4.0:") + depends_on("r-rlang@1.1.0:", type=("build", "run"), when="@3.4.2:") depends_on("r-scales@0.5.0:", type=("build", "run")) depends_on("r-scales@1.2.0:", type=("build", "run"), when="@3.4.0:") depends_on("r-tibble", type=("build", "run")) @@ -49,5 +52,4 @@ class RGgplot2(RPackage): depends_on("r-reshape2", type=("build", "run"), when="@:3.2.0") depends_on("r-lazyeval", type=("build", "run"), when="@:3.2.0") depends_on("r-viridislite", type=("build", "run"), when="@3.0.0:3.2.0") - depends_on("r-digest", type=("build", "run")) - depends_on("r-digest", when="@:3.3.6") + depends_on("r-digest", type=("build", "run"), when="@:3.3.6") diff --git a/var/spack/repos/builtin/packages/r-ggpubr/package.py b/var/spack/repos/builtin/packages/r-ggpubr/package.py index 49cce56edc..6fe8e00c8e 100644 --- a/var/spack/repos/builtin/packages/r-ggpubr/package.py +++ b/var/spack/repos/builtin/packages/r-ggpubr/package.py @@ -19,6 +19,7 @@ class RGgpubr(RPackage): cran = "ggpubr" + version("0.6.0", sha256="2e6ec5d8151991d17ef8832259cf545fa0d1a50b326ba8c1c4657700171df774") version("0.4.0", sha256="abb21ec0b1ae3fa1c58eedca2d59b9b009621b30e3660f1247b3880c5fa50675") version("0.2.2", sha256="1c93dc6d1f08680dd00a10b6842445700d1fccb11f18599fbdf51e70c6b6b364") version("0.2.1", sha256="611e650da9bd15d7157fdcdc4e926fee3b88df3aba87410fdb1c8a7294d98d28") @@ -27,19 +28,25 @@ class RGgpubr(RPackage): depends_on("r@3.1.0:", type=("build", "run")) depends_on("r-ggplot2", type=("build", "run")) + depends_on("r-ggplot2@3.4.0:", type=("build", "run"), when="@0.6.0:") depends_on("r-ggrepel", type=("build", "run")) + depends_on("r-ggrepel@0.9.2:", type=("build", "run"), when="@0.6.0:") depends_on("r-ggsci", type=("build", "run")) depends_on("r-tidyr", type=("build", "run"), when="@0.2:") + depends_on("r-tidyr@1.3.0:", type=("build", "run"), when="@0.6.0:") depends_on("r-plyr", type=("build", "run"), when="@:0.1.2") depends_on("r-purrr", type=("build", "run"), when="@0.2:") depends_on("r-dplyr@0.7.1:", type=("build", "run"), when="@0.2:") depends_on("r-cowplot", type=("build", "run"), when="@0.2:") + depends_on("r-cowplot@1.1.1:", type=("build", "run"), when="@0.6.0:") depends_on("r-ggsignif", type=("build", "run"), when="@0.2:") depends_on("r-scales", type=("build", "run"), when="@0.2:") depends_on("r-gridextra", type=("build", "run"), when="@0.2:") depends_on("r-glue", type=("build", "run"), when="@0.2:") depends_on("r-polynom", type=("build", "run"), when="@0.2:") depends_on("r-rlang", type=("build", "run"), when="@0.2.2:") + depends_on("r-rlang@0.4.6:", type=("build", "run"), when="@0.6.0:") depends_on("r-rstatix@0.6.0:", type=("build", "run"), when="@0.4.0:") + depends_on("r-rstatix@0.7.2:", type=("build", "run"), when="@0.6.0:") depends_on("r-tibble", type=("build", "run"), when="@0.4.0:") depends_on("r-magrittr", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-ggrepel/package.py b/var/spack/repos/builtin/packages/r-ggrepel/package.py index 5d261f41c6..fdb5fc49f4 100644 --- a/var/spack/repos/builtin/packages/r-ggrepel/package.py +++ b/var/spack/repos/builtin/packages/r-ggrepel/package.py @@ -15,6 +15,7 @@ class RGgrepel(RPackage): cran = "ggrepel" + version("0.9.3", sha256="b9eba0e2edee84db0276b49e4834b65f5369edc4bc56f4cacc13e0d1c39a005c") version("0.9.2", sha256="0a3088c48177528e2a65defebbc4f09a744ebb44408588f688811f8d0d827488") version("0.9.1", sha256="29fb916d4799ba6503a5dd019717ffdf154d2aaae9ff1736f03e2be24af6bdfc") version("0.9.0", sha256="4f7ca3da7dc08902487c961c539ef43516263c30abcc4ce303ff3c5580f42fda") @@ -28,3 +29,4 @@ class RGgrepel(RPackage): depends_on("r-rlang@0.3.0:", type=("build", "run"), when="@0.9.0:") depends_on("r-scales@0.3.0:", type=("build", "run")) depends_on("r-scales@0.5.0:", type=("build", "run"), when="@0.9.0:") + depends_on("r-withr@2.5.0:", type=("build", "run"), when="@0.9.3:") diff --git a/var/spack/repos/builtin/packages/r-ggridges/package.py b/var/spack/repos/builtin/packages/r-ggridges/package.py index d19aaf7e7f..1d07680485 100644 --- a/var/spack/repos/builtin/packages/r-ggridges/package.py +++ b/var/spack/repos/builtin/packages/r-ggridges/package.py @@ -27,5 +27,5 @@ class RGgridges(RPackage): depends_on("r-ggplot2@3.0.0:", type=("build", "run"), when="@0.5.3:") depends_on("r-scales@0.4.1:", type=("build", "run")) depends_on("r-withr@2.1.1:", type=("build", "run"), when="@0.5.0:") - depends_on("r-plyr@1.8.0:", type=("build", "run")) - depends_on("r-plyr", when="@:0.5.3") + + depends_on("r-plyr@1.8.0:", type=("build", "run"), when="@:0.5.3") diff --git a/var/spack/repos/builtin/packages/r-ggsci/package.py b/var/spack/repos/builtin/packages/r-ggsci/package.py index 49c9682727..59c48650ec 100644 --- a/var/spack/repos/builtin/packages/r-ggsci/package.py +++ b/var/spack/repos/builtin/packages/r-ggsci/package.py @@ -15,10 +15,12 @@ class RGgsci(RPackage): cran = "ggsci" + version("3.0.0", sha256="8901316516d78f82a2a8685d93ba479424bcfd8cb5e28a28adbd50e68964e129") version("2.9", sha256="4af14e6f3657134c115d5ac5e65a2ed74596f9a8437c03255447cd959fe9e33c") version("2.8", sha256="b4ce7adce7ef23edf777866086f98e29b2b45b58fed085bbd1ffe6ab52d74ae8") version("2.4", sha256="9682c18176fee8e808c68062ec918aaef630d4d833e7a0bd6ae6c63553b56f00") depends_on("r@3.0.2:", type=("build", "run")) + depends_on("r@3.5.0:", type=("build", "run"), when="@3.0.0:") depends_on("r-scales", type=("build", "run")) depends_on("r-ggplot2@2.0.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-gh/package.py b/var/spack/repos/builtin/packages/r-gh/package.py index a6cbcb467e..8aeb38af6a 100644 --- a/var/spack/repos/builtin/packages/r-gh/package.py +++ b/var/spack/repos/builtin/packages/r-gh/package.py @@ -13,6 +13,7 @@ class RGh(RPackage): cran = "gh" + version("1.4.0", sha256="68c69fcd18429b378e639a09652465a4e92b7b5b5704804d0c5b1ca2b9b58b71") version("1.3.1", sha256="fbaea2abdeceb03d28839fd0e58c2eea01092f9ef92dcc044718ef0d298612ef") version("1.3.0", sha256="a44039054e8ca56496f2d9c7a10cdadf4a7383bc91086e768ba7e7f1fbcaed1c") version("1.2.0", sha256="2988440ed2ba4b241c8ffbafbfdad29493574980a9aeba210521dadda91f7eff") @@ -25,7 +26,8 @@ class RGh(RPackage): depends_on("r-cli@2.0.1:", type=("build", "run"), when="@1.2.0:") depends_on("r-cli@3.0.1:", type=("build", "run"), when="@1.3.1:") depends_on("r-gitcreds", type=("build", "run"), when="@1.2.0:") - depends_on("r-httr", type=("build", "run")) - depends_on("r-httr@1.2:", type=("build", "run"), when="@1.1.0:") + depends_on("r-httr2", type=("build", "run"), when="@1.4.0:") depends_on("r-ini", type=("build", "run")) depends_on("r-jsonlite", type=("build", "run")) + depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@1.4.0:") + depends_on("r-httr@1.2:", type=("build", "run"), when="@1.1.0:1.3.1") diff --git a/var/spack/repos/builtin/packages/r-git2r/package.py b/var/spack/repos/builtin/packages/r-git2r/package.py index 49e4ea707a..15f165f9f4 100644 --- a/var/spack/repos/builtin/packages/r-git2r/package.py +++ b/var/spack/repos/builtin/packages/r-git2r/package.py @@ -15,6 +15,7 @@ class RGit2r(RPackage): cran = "git2r" + version("0.32.0", sha256="1b5d254c0c684a56751d26d482823d0006964eb1f55c558f365d037f5e984671") version("0.31.0", sha256="f1db9278fa4604600a64beaedcf86dda595d7c8a10cdb1f7300a6635e73cd66d") version("0.30.1", sha256="85d913ddc7659e32c1b98ebc247fa1cc1b7717a5bd413fa78ea84696986ca840") version("0.29.0", sha256="f8f7a181dc0ac761f2a0c4099bfd744ded01c0e0832cab32dc5b4da32accd48e") diff --git a/var/spack/repos/builtin/packages/r-globals/package.py b/var/spack/repos/builtin/packages/r-globals/package.py index 5372c61724..687a3b94fa 100644 --- a/var/spack/repos/builtin/packages/r-globals/package.py +++ b/var/spack/repos/builtin/packages/r-globals/package.py @@ -17,6 +17,7 @@ class RGlobals(RPackage): cran = "globals" + version("0.16.2", sha256="682c26a95fa6c4e76a3a875be1a3192fc5b88e036c80dfa3b256add0336d770a") version("0.16.1", sha256="f7f63a575a3dd518c6afeabb4116bd26692a2a250df113059bc1a5b4711a1e95") version("0.15.0", sha256="f83689a420590b0d62b049c40a944c1c8c7202b3f1cc12102712c63104e99496") version("0.14.0", sha256="203dbccb829ca9cc6aedb6f5e79cb126ea31f8dd379dff9111ec66e3628c32f3") diff --git a/var/spack/repos/builtin/packages/r-gmp/package.py b/var/spack/repos/builtin/packages/r-gmp/package.py index 1a4eef62b9..0bd020e8a0 100644 --- a/var/spack/repos/builtin/packages/r-gmp/package.py +++ b/var/spack/repos/builtin/packages/r-gmp/package.py @@ -15,6 +15,7 @@ class RGmp(RPackage): cran = "gmp" + version("0.7-1", sha256="a6873dc65218905cb7615cb8e2522258f3740e29c0632473d58a1cb409835db6") version("0.6-7", sha256="6333fe691f267aa29f8078f7f738dda50c496f660357276fd33e28d607363f85") version("0.6-6", sha256="87fa95a8084855d2137b3863b6b8f3c277280dbe3a6a230e359cf32c3bed2793") version("0.6-5", sha256="8ae76f3d17542eab3e7468341dabeebe28b11da8c1b4b3f7bbdb00d379689e52") diff --git a/var/spack/repos/builtin/packages/r-googleauthr/package.py b/var/spack/repos/builtin/packages/r-googleauthr/package.py index d31fd7f0c1..f4ccdd77a2 100644 --- a/var/spack/repos/builtin/packages/r-googleauthr/package.py +++ b/var/spack/repos/builtin/packages/r-googleauthr/package.py @@ -15,11 +15,14 @@ class RGoogleauthr(RPackage): cran = "googleAuthR" + version("2.0.1", sha256="9b19a63bc250151674f20b27389baa95c10cc62dc7c3c0ff12a8d684bdb8a14b") version("2.0.0", sha256="ba504baf3bde2e1b3e988bee7602df5765cc6ca542cf0ab76a782c4e60966feb") depends_on("r@3.3.0:", type=("build", "run")) depends_on("r-assertthat", type=("build", "run")) + depends_on("r-assertthat@0.2.0:", type=("build", "run"), when="@2.0.1:") depends_on("r-cli", type=("build", "run")) + depends_on("r-cli@2.0.2:", type=("build", "run"), when="@2.0.1:") depends_on("r-digest", type=("build", "run")) depends_on("r-gargle@1.2.0:", type=("build", "run")) depends_on("r-httr@1.4.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-googledrive/package.py b/var/spack/repos/builtin/packages/r-googledrive/package.py index 33dd9e1270..3bc5fa11e9 100644 --- a/var/spack/repos/builtin/packages/r-googledrive/package.py +++ b/var/spack/repos/builtin/packages/r-googledrive/package.py @@ -13,11 +13,14 @@ class RGoogledrive(RPackage): cran = "googledrive" + version("2.1.0", sha256="0d70353bbf1bebc96d3987ebd9cbb2b0902e6ddc4cdccece3d07c2bb688c4b74") version("2.0.0", sha256="605c469a6a086ef4b049909c2e20a35411c165ce7ce4f62d68fd39ffed8c5a26") depends_on("r@3.3:", type=("build", "run")) + depends_on("r@3.5:", type=("build", "run"), when="@2.1.0:") depends_on("r-cli@3.0.0:", type=("build", "run")) depends_on("r-gargle@1.2.0:", type=("build", "run")) + depends_on("r-gargle@1.3.0:", type=("build", "run"), when="@2.1.0:") depends_on("r-glue@1.4.2:", type=("build", "run")) depends_on("r-httr", type=("build", "run")) depends_on("r-jsonlite", type=("build", "run")) @@ -25,7 +28,9 @@ class RGoogledrive(RPackage): depends_on("r-magrittr", type=("build", "run")) depends_on("r-pillar", type=("build", "run")) depends_on("r-purrr@0.2.3:", type=("build", "run")) + depends_on("r-purrr@1.0.1:", type=("build", "run"), when="@2.1.0:") depends_on("r-rlang@0.4.9:", type=("build", "run")) + depends_on("r-rlang@1.0.2:", type=("build", "run"), when="@2.1.0:") depends_on("r-tibble@2.0.0:", type=("build", "run")) depends_on("r-uuid", type=("build", "run")) depends_on("r-vctrs@0.3.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-googlesheets4/package.py b/var/spack/repos/builtin/packages/r-googlesheets4/package.py index 7c53d705f2..82e7197d42 100644 --- a/var/spack/repos/builtin/packages/r-googlesheets4/package.py +++ b/var/spack/repos/builtin/packages/r-googlesheets4/package.py @@ -19,20 +19,25 @@ class RGooglesheets4(RPackage): cran = "googlesheets4" + version("1.1.0", sha256="50e15543bef5b8d8cda36f6ea8a1d59b256d889cd3cedddc91f00ae30c8c8ec9") version("1.0.1", sha256="284ecbce98944093cb065c1b0b32074eae7b45fd74b87d7815c7ca6deca76591") version("1.0.0", sha256="0a107d76aac99d6db48d97ce55810c1412b2197f457b8476f676169a36c7cc7a") depends_on("r@3.3:", type=("build", "run")) depends_on("r@3.4:", type=("build", "run"), when="@1.0.1:") + depends_on("r@3.5:", type=("build", "run"), when="@1.1.0:") depends_on("r-cellranger", type=("build", "run")) depends_on("r-cli@3.0.0:", type=("build", "run")) depends_on("r-curl", type=("build", "run")) depends_on("r-gargle@1.2.0", type=("build", "run")) depends_on("r-gargle@1.2.0:", type=("build", "run"), when="@1.0.1:") + depends_on("r-gargle@1.3.0:", type=("build", "run"), when="@1.1.0:") depends_on("r-glue@1.3.0:", type=("build", "run")) depends_on("r-googledrive@2.0.0:", type=("build", "run")) + depends_on("r-googledrive@2.1.0:", type=("build", "run"), when="@1.1.0:") depends_on("r-httr", type=("build", "run")) depends_on("r-ids", type=("build", "run")) + depends_on("r-lifecycle", type=("build", "run"), when="@1.1.0:") depends_on("r-magrittr", type=("build", "run")) depends_on("r-purrr", type=("build", "run")) depends_on("r-rematch2", type=("build", "run")) @@ -40,3 +45,4 @@ class RGooglesheets4(RPackage): depends_on("r-rlang@1.0.2:", type=("build", "run"), when="@1.0.1:") depends_on("r-tibble@2.1.1:", type=("build", "run")) depends_on("r-vctrs@0.2.3:", type=("build", "run")) + depends_on("r-withr", type=("build", "run"), when="@1.1.0:") diff --git a/var/spack/repos/builtin/packages/r-googlevis/package.py b/var/spack/repos/builtin/packages/r-googlevis/package.py index 59c1227c66..807b62a3de 100644 --- a/var/spack/repos/builtin/packages/r-googlevis/package.py +++ b/var/spack/repos/builtin/packages/r-googlevis/package.py @@ -17,6 +17,7 @@ class RGooglevis(RPackage): cran = "googleVis" + version("0.7.1", sha256="335931059ea8645f824b01a06d30fafb4e38b47cd610a5eee20628801767f218") version("0.7.0", sha256="5f1636024e678f9973e3ce605b46f46ea9cdffd58b98e315b495e66f34eb02e9") version("0.6.11", sha256="f8c90b6c51da7bf184bff6762d98fc24faba1b634724ecdb987161ee10987b97") version("0.6.9", sha256="0739d0a3382a73a824b5ff9a6fe329198dd05c9da5855ac051ed022d7b41b7ea") diff --git a/var/spack/repos/builtin/packages/r-gparotation/package.py b/var/spack/repos/builtin/packages/r-gparotation/package.py index 124bca0fde..cf05794f34 100644 --- a/var/spack/repos/builtin/packages/r-gparotation/package.py +++ b/var/spack/repos/builtin/packages/r-gparotation/package.py @@ -14,6 +14,7 @@ class RGparotation(RPackage): cran = "GPArotation" + version("2023.3-1", sha256="8748086c3d45286b7c9a81f0f8e58df75a09ba555d48a6eb8cd94af0c7c92a26") version("2022.10-2", sha256="04f72d8f3a9c204df5df904be563ec272a8437a707daee8823b2a690dde21917") version("2022.4-1", sha256="231e7edcdcc091fbecfb4f2e88d1a4344967cf7ea58074b385a4b8b48d9da224") version("2014.11-1", sha256="351bc15fc8dc6c8ea5045fbba22180d1e68314fc34d267545687748e312e5096") diff --git a/var/spack/repos/builtin/packages/r-graphlayouts/package.py b/var/spack/repos/builtin/packages/r-graphlayouts/package.py index 58ef42b45f..bf2bcf05f8 100644 --- a/var/spack/repos/builtin/packages/r-graphlayouts/package.py +++ b/var/spack/repos/builtin/packages/r-graphlayouts/package.py @@ -17,6 +17,7 @@ class RGraphlayouts(RPackage): cran = "graphlayouts" + version("0.8.4", sha256="778d8f7e190b05d0dbbaa7e6dbdfc0b8fef3c83b71333a6fa89926e6c04690fd") version("0.8.3", sha256="f9e4e5d794b4d1c6eba962490b3220d09b73e10893f5fa3be210240bfc654421") version("0.8.2", sha256="0fa2777a2c159f3ef1209cd96838d2651d144c9c971abfef1d22bc6376f47bec") version("0.8.0", sha256="d724266778e4d97ca7a762253c293ffa3d09e2627cb1c3c7a654c690819defd0") diff --git a/var/spack/repos/builtin/packages/r-gsl/package.py b/var/spack/repos/builtin/packages/r-gsl/package.py index 26ea21fd4d..ef74ea8de2 100644 --- a/var/spack/repos/builtin/packages/r-gsl/package.py +++ b/var/spack/repos/builtin/packages/r-gsl/package.py @@ -14,8 +14,10 @@ class RGsl(RPackage): cran = "gsl" + version("2.1-8", sha256="f33609bf485abd190e65ff5d0fdab438b759294c47b921d983d89d6f053a2d95") version("2.1-7.1", sha256="ee98d1382d37ffa77538a90ccdbf44affbf1710a9e66b8ada73fa72e67921985") version("2.1-6", sha256="f5d463239693f146617018987687db31b163653708cbae0b730b9b7bed81995c") depends_on("r@3.1.0:", type=("build", "run")) + depends_on("r@4.0.0:", type=("build", "run"), when="@2.1-8:") depends_on("gsl@2.1:") diff --git a/var/spack/repos/builtin/packages/r-gss/package.py b/var/spack/repos/builtin/packages/r-gss/package.py index f5d7143953..fa57dd130d 100644 --- a/var/spack/repos/builtin/packages/r-gss/package.py +++ b/var/spack/repos/builtin/packages/r-gss/package.py @@ -14,6 +14,7 @@ class RGss(RPackage): cran = "gss" + version("2.2-4", sha256="953e89dfe3bee9cac51df3e5325bf4d1496ad76e4393706c4efdb1834c0c7441") version("2.2-3", sha256="24306401cf4e5869f8a690eca7e17c044ece83edd66969bd2daf5976272d244b") version("2.2-2", sha256="1da4da894378ee730cff9628e8b4d2a0d7dfa344b94e5bce6953e66723c21fe4") version("2.1-10", sha256="26c47ecae6a9b7854a1b531c09f869cf8b813462bd8093e3618e1091ace61ee2") diff --git a/var/spack/repos/builtin/packages/r-gstat/package.py b/var/spack/repos/builtin/packages/r-gstat/package.py index 5c804c623d..226b7b0f9e 100644 --- a/var/spack/repos/builtin/packages/r-gstat/package.py +++ b/var/spack/repos/builtin/packages/r-gstat/package.py @@ -17,6 +17,7 @@ class RGstat(RPackage): cran = "gstat" + version("2.1-1", sha256="48b205e65155effb6827fca062f2a409a0922241b7714cc6c8248f141b125d25") version("2.1-0", sha256="57a6eb46fa601f159ace1e56ebe8928d210a62d85552a4eb5a5ca4ada48f2d6f") version("2.0-9", sha256="122c032c2e15388496853597ebcb5664e76cda96b164e9917ee66d1c24fba4a6") version("2.0-8", sha256="57cb9e8235a39379a96af0a5651c82e02fdd608375917939948c3dbf170668e8") diff --git a/var/spack/repos/builtin/packages/r-gtable/package.py b/var/spack/repos/builtin/packages/r-gtable/package.py index 21fa076780..f9e5896681 100644 --- a/var/spack/repos/builtin/packages/r-gtable/package.py +++ b/var/spack/repos/builtin/packages/r-gtable/package.py @@ -17,8 +17,14 @@ class RGtable(RPackage): cran = "gtable" + version("0.3.3", sha256="2f9a58d978e2a487b7fd8841539ea33cf948e55ddf6f7a9bd2dd3362600a7b3a") version("0.3.1", sha256="8bd62c5722d5188914d667cabab12991c555f657f4f5ce7b547571ae3aec7cb5") version("0.3.0", sha256="fd386cc4610b1cc7627dac34dba8367f7efe114b968503027fb2e1265c67d6d3") version("0.2.0", sha256="801e4869830ff3da1d38e41f5a2296a54fc10a7419c6ffb108582850c701e76f") depends_on("r@3.0:", type=("build", "run")) + depends_on("r@3.5:", type=("build", "run"), when="@0.3.3:") + depends_on("r-rlang@1.1.0:", type=("build", "run"), when="@0.3.3:") + depends_on("r-lifecycle", type=("build", "run"), when="@0.3.3:") + depends_on("r-glue", type=("build", "run"), when="@0.3.3:") + depends_on("r-cli", type=("build", "run"), when="@0.3.3:") diff --git a/var/spack/repos/builtin/packages/r-hardhat/package.py b/var/spack/repos/builtin/packages/r-hardhat/package.py index 5befece048..3d673747be 100644 --- a/var/spack/repos/builtin/packages/r-hardhat/package.py +++ b/var/spack/repos/builtin/packages/r-hardhat/package.py @@ -19,18 +19,24 @@ class RHardhat(RPackage): cran = "hardhat" + version("1.3.0", sha256="fe9ff009e2ba6dd4d70cbb541430f88d85c0a28d6a1c2772e4910c79b81fe82e") version("1.2.0", sha256="f9320eccb1b5f624a46fa074e3ccc202c383b77098ecd08b193aeb47daedad78") version("1.0.0", sha256="2740dc243a440e7d32370a78f9258255faea6d900075901cf6009c651769e7bd") version("0.2.0", sha256="9497ca0fe6206c54d1da79f248d44c5faffc7d375b630091ef45dfca46c29628") depends_on("r@2.10:", type=("build", "run")) depends_on("r@3.4.0:", type=("build", "run"), when="@1.0.0:") + depends_on("r@3.5.0:", type=("build", "run"), when="@1.3.0:") + depends_on("r-cli@3.6.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-glue", type=("build", "run")) depends_on("r-glue@1.6.2:", type=("build", "run"), when="@1.0.0:") depends_on("r-rlang@0.4.2:", type=("build", "run")) depends_on("r-rlang@1.0.2:", type=("build", "run"), when="@1.0.0:") depends_on("r-rlang@1.0.3:", type=("build", "run"), when="@1.2.0:") + depends_on("r-rlang@1.1.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-tibble", type=("build", "run")) depends_on("r-tibble@3.1.7:", type=("build", "run"), when="@1.0.0:") + depends_on("r-tibble@3.2.1:", type=("build", "run"), when="@1.3.0:") depends_on("r-vctrs@0.3.0:", type=("build", "run")) depends_on("r-vctrs@0.4.1:", type=("build", "run"), when="@1.0.0:") + depends_on("r-vctrs@0.6.0:", type=("build", "run"), when="@1.3.0:") diff --git a/var/spack/repos/builtin/packages/r-haven/package.py b/var/spack/repos/builtin/packages/r-haven/package.py index c99022d69f..213c3f2c2d 100644 --- a/var/spack/repos/builtin/packages/r-haven/package.py +++ b/var/spack/repos/builtin/packages/r-haven/package.py @@ -14,6 +14,7 @@ class RHaven(RPackage): cran = "haven" + version("2.5.2", sha256="2131fb0377ae1beffae54bf4beb8b3a876e9b6b9841a5acc39a2a2615023561d") version("2.5.1", sha256="9f40462097a0b1cf3831bca493851fe4a6b3570d957a775ca81940f241c50a70") version("2.5.0", sha256="b580311bc1b28efc6b123e29a331282b9f7eb552c485f4e5cacab39fe534aff4") version("2.4.3", sha256="95b70f47e77792bed4312441787299d2e3e27d79a176f0638a37e5301b93295f") diff --git a/var/spack/repos/builtin/packages/r-hdf5r/package.py b/var/spack/repos/builtin/packages/r-hdf5r/package.py index 1d1573a72e..5e3064ef93 100644 --- a/var/spack/repos/builtin/packages/r-hdf5r/package.py +++ b/var/spack/repos/builtin/packages/r-hdf5r/package.py @@ -18,6 +18,7 @@ class RHdf5r(RPackage): cran = "hdf5r" + version("1.3.8", sha256="b53281e2cf57447965849748e972de2f7fe8df0cee3538ef5813c33c7ed2302b") version("1.3.7", sha256="6e8a02843ed1c970cb41f97e2acee34853d3b70ce617bc9bcff07c41b98f295b") version("1.3.5", sha256="87b75173ab226a9fbaa5b28289349f3c56b638629560a172994b8f9323c1622f") version("1.3.3", sha256="a0f83cbf21563e81dbd1a1bd8379623ed0c9c4df4e094c75013abfd7a5271545") @@ -35,4 +36,4 @@ class RHdf5r(RPackage): # wrapper built with cmake does not support the '-show' or '-showconfig' # flags. The following patch replaces those commands in the configure # script with pkg-config commands. - patch("configure.patch") + patch("configure.patch", when="@:1.3.7") diff --git a/var/spack/repos/builtin/packages/r-hexbin/package.py b/var/spack/repos/builtin/packages/r-hexbin/package.py index ee2fdaafa3..7be2ef56b4 100644 --- a/var/spack/repos/builtin/packages/r-hexbin/package.py +++ b/var/spack/repos/builtin/packages/r-hexbin/package.py @@ -15,6 +15,7 @@ class RHexbin(RPackage): cran = "hexbin" + version("1.28.3", sha256="0eb33511c1a4ff29dda8b89fee420ea7041033f981c7f16484c9f504d749de5f") version("1.28.2", sha256="6241f8d3a6c6be2c1c693c3ddb99554bc103e3c6cf602d0c2787c0ce6fd1702d") version("1.27.3", sha256="7ea422a76542c2fc2840df601af1b7803aa96df4fee6d51dec456ac36940c191") version("1.27.2", sha256="46d47b1efef75d6f126af686a4dd614228b60418b9a5bde9e9e5d11200a0ee52") diff --git a/var/spack/repos/builtin/packages/r-hmisc/package.py b/var/spack/repos/builtin/packages/r-hmisc/package.py index ce34c09dab..41e31441d8 100644 --- a/var/spack/repos/builtin/packages/r-hmisc/package.py +++ b/var/spack/repos/builtin/packages/r-hmisc/package.py @@ -17,6 +17,7 @@ class RHmisc(RPackage): cran = "Hmisc" + version("5.0-1", sha256="db390f8f8a150cb5cffb812e9609a8e8632ceae0dc198528f190fd670ba8fa59") version("4.7-1", sha256="325d571a68b2198eabd258a8d86143cac659ffa70e474088a18e9b58ab882e7f") version("4.7-0", sha256="29ec2d9ca11c790c350e93323126bef4f498c69c41c31bb335fd04671e0f87bd") version("4.6-0", sha256="2c1ce906b2333c6dc946dc7f10b74cfa552bce2b12dbebf295d143163562a1ad") @@ -25,12 +26,8 @@ class RHmisc(RPackage): version("4.2-0", sha256="9e9614673288dd00295f250fa0bf96fc9e9fed692c69bf97691081c1a01411d9") version("4.1-1", sha256="991db21cdf73ffbf5b0239a4876b2e76fd243ea33528afd88dc968792f281498") - depends_on("r-lattice", type=("build", "run")) - depends_on("r-survival@2.40-1:", type=("build", "run")) - depends_on("r-survival@3.1-6:", type=("build", "run"), when="@4.4:") depends_on("r-formula", type=("build", "run")) depends_on("r-ggplot2@2.2:", type=("build", "run")) - depends_on("r-latticeextra", type=("build", "run")) depends_on("r-cluster", type=("build", "run")) depends_on("r-rpart", type=("build", "run")) depends_on("r-nnet", type=("build", "run")) @@ -42,5 +39,12 @@ class RHmisc(RPackage): depends_on("r-viridis", type=("build", "run")) depends_on("r-htmltools", type=("build", "run")) depends_on("r-base64enc", type=("build", "run")) + depends_on("r-knitr", type=("build", "run"), when="@5.0-1:") + depends_on("r-rmarkdown", type=("build", "run"), when="@5.0-1:") + depends_on("r-colorspace", type=("build", "run"), when="@5.0-1:") depends_on("r-acepack", type=("build", "run"), when="@:4.4-0") + depends_on("r-lattice", type=("build", "run"), when="@:4.7-1") + depends_on("r-latticeextra", type=("build", "run"), when="@:4.7-1") + depends_on("r-survival@2.40-1:", type=("build", "run"), when="@:4.7-1") + depends_on("r-survival@3.1-6:", type=("build", "run"), when="@4.4:4.7-1") diff --git a/var/spack/repos/builtin/packages/r-htmltools/package.py b/var/spack/repos/builtin/packages/r-htmltools/package.py index efba7d63f5..c34c86bffd 100644 --- a/var/spack/repos/builtin/packages/r-htmltools/package.py +++ b/var/spack/repos/builtin/packages/r-htmltools/package.py @@ -13,6 +13,7 @@ class RHtmltools(RPackage): cran = "htmltools" + version("0.5.5", sha256="c8b23fab855a89c6ed0f6d6c7cad0ff9c5ae329c0bdb479940443ee752f26659") version("0.5.3", sha256="2c451b369ea8918358e2b280f548816664fe0143222c609e6bfb1f9cd2f7324f") version("0.5.2", sha256="7dc7d50436e5a82a5801f85bcd2f572a06a98b4027d71aa17b4854ec9b2767fb") version("0.5.1.1", sha256="f0bfe72ffe330f3d6c9ead5857f3a4aef80e002e32558074a3e643f2ab67a4ba") @@ -26,5 +27,6 @@ class RHtmltools(RPackage): depends_on("r-rlang@0.4.10:", type=("build", "run"), when="@0.5.2:") depends_on("r-rlang", type=("build", "run"), when="@0.5.1:") depends_on("r-fastmap@1.1.0:", type=("build", "run"), when="@0.5.2:") + depends_on("r-ellipsis", type=("build", "run"), when="@0.5.5:") depends_on("r-rcpp", type=("build", "run"), when="@:0.3.6") diff --git a/var/spack/repos/builtin/packages/r-htmlwidgets/package.py b/var/spack/repos/builtin/packages/r-htmlwidgets/package.py index 3dc29f81d7..2386ad8ba2 100644 --- a/var/spack/repos/builtin/packages/r-htmlwidgets/package.py +++ b/var/spack/repos/builtin/packages/r-htmlwidgets/package.py @@ -15,6 +15,7 @@ class RHtmlwidgets(RPackage): cran = "htmlwidgets" + version("1.6.2", sha256="7fda1672a4c0fbc203c790677b6ee7c40d2c2d72be4f6772f75288fc712b10bc") version("1.5.4", sha256="1a3fc60f40717de7f1716b754fd1c31a132e489a2560a278636ee78eba46ffc1") version("1.5.3", sha256="01a5833182cc224bd100be2815e57e67b524de9f2bb1542787b6e3d1303f0f29") version("1.3", sha256="f1e4ffabc29e6cfe857f627da095be3cfcbe0e1f02ae75e572f10b4a026c5a12") @@ -23,5 +24,8 @@ class RHtmlwidgets(RPackage): version("0.6", sha256="9c227f93ada71526d6e195e39a8efef41255af5567e39db3a6417ea9fed192ea") depends_on("r-htmltools@0.3:", type=("build", "run")) + depends_on("r-htmltools@0.5.4:", type=("build", "run"), when="@1.6.2:") depends_on("r-jsonlite@0.9.16:", type=("build", "run")) depends_on("r-yaml", type=("build", "run")) + depends_on("r-rmarkdown", type=("build", "run"), when="@1.6.2:") + depends_on("r-knitr@1.8:", type=("build", "run"), when="@1.6.2:") diff --git a/var/spack/repos/builtin/packages/r-httr2/package.py b/var/spack/repos/builtin/packages/r-httr2/package.py new file mode 100644 index 0000000000..146ba8d238 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-httr2/package.py @@ -0,0 +1,30 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RHttr2(RPackage): + """Perform HTTP Requests and Process the Responses. + + Tools for creating and modifying HTTP requests, then performing them and + processing the results. 'httr2' is a modern re-imagining of 'httr' that + uses a pipe-based interface and solves more of the problems that API + wrapping packages face.""" + + cran = "httr2" + + version("0.2.2", sha256="5d1ab62541f7817112519f0f9d00d6a2555bab5b2da7f5c6d579b0c307d7f2bf") + + depends_on("r@3.4:", type=("build", "run")) + depends_on("r-cli@3.0.0:", type=("build", "run")) + depends_on("r-curl", type=("build", "run")) + depends_on("r-glue", type=("build", "run")) + depends_on("r-magrittr", type=("build", "run")) + depends_on("r-openssl", type=("build", "run")) + depends_on("r-r6", type=("build", "run")) + depends_on("r-rappdirs", type=("build", "run")) + depends_on("r-rlang@1.0.0:", type=("build", "run")) + depends_on("r-withr", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-igraph/package.py b/var/spack/repos/builtin/packages/r-igraph/package.py index 2ab23eab1b..d4852d7e4f 100644 --- a/var/spack/repos/builtin/packages/r-igraph/package.py +++ b/var/spack/repos/builtin/packages/r-igraph/package.py @@ -15,6 +15,7 @@ class RIgraph(RPackage): cran = "igraph" + version("1.4.2", sha256="7d5300adb1a25a6470cada8630e35ef416181147ab624d5a0a8d3552048c4ae5") version("1.3.5", sha256="9e615d67b6b5b57dfa54ec2bbc8c29da8f7c3fe82af1e35ab27273b1035b9bd4") version("1.3.1", sha256="505a2ba7c417ceaf869240cc1c9a5f3fbd75f8d9dfcfe048df1326c6ec41144e") version("1.2.11", sha256="1c8b715eb61e6e7d9082858673929f8e84dc832c0a2a7aba7811511bbd2000de") @@ -24,10 +25,13 @@ class RIgraph(RPackage): version("1.1.2", sha256="89b16b41bc77949ea208419e52a18b78b5d418c7fedc52cd47d06a51a6e746ec") version("1.0.1", sha256="dc64ed09b8b5f8d66ed4936cde3491974d6bc5178dd259b6eab7ef3936aa5602") + depends_on("r@3.0.2:", type=("build", "run"), when="@1.4.2:") + depends_on("r-magrittr", type=("build", "run")) depends_on("r-matrix", type=("build", "run")) depends_on("r-pkgconfig@2.0.0:", type=("build", "run")) depends_on("r-rlang", type=("build", "run"), when="@1.3.5:") + depends_on("r-cpp11@0.2.0:", type=("build", "run"), when="@1.4.2:") depends_on("gmp") depends_on("gmp@4.38:", when="@1.2.11:") depends_on("libxml2") diff --git a/var/spack/repos/builtin/packages/r-imager/package.py b/var/spack/repos/builtin/packages/r-imager/package.py index b89e52b23b..3053ea9491 100644 --- a/var/spack/repos/builtin/packages/r-imager/package.py +++ b/var/spack/repos/builtin/packages/r-imager/package.py @@ -18,6 +18,7 @@ class RImager(RPackage): cran = "imager" + version("0.42.19", sha256="187abccba648ecece5e466ca6333acd5c8fdd1476daa2d04d5fa9ec5400ae1e2") version("0.42.13", sha256="d90a9893d11190ba249c7fae5bd6517a77907efbce2941452cb2aec57bb5cf7f") version("0.42.11", sha256="47f8b7ff8d05a5191e30ad1869f12a62bdbe3142b22b12a6032dec9b5f8532a8") version("0.42.10", sha256="01939eb03ad2e1369a4240a128c3b246a4c56f572f1ea4967f1acdc555adaeee") diff --git a/var/spack/repos/builtin/packages/r-inum/package.py b/var/spack/repos/builtin/packages/r-inum/package.py index 50535427f3..ecedd5e5d5 100644 --- a/var/spack/repos/builtin/packages/r-inum/package.py +++ b/var/spack/repos/builtin/packages/r-inum/package.py @@ -14,6 +14,7 @@ class RInum(RPackage): cran = "inum" + version("1.0-5", sha256="e696b7e0b31b3bbf405112e60691b6a72fedcaa02e08ee517c59f6bf9cd36bbd") version("1.0-4", sha256="5febef69c43a4b95b376c1418550a949d988a5f26b1383ca01c9728a94fc13ce") version("1.0-1", sha256="3c2f94c13c03607e05817e4859595592068b55e810fed94e29bc181ad248a099") diff --git a/var/spack/repos/builtin/packages/r-ipred/package.py b/var/spack/repos/builtin/packages/r-ipred/package.py index 01b5d34744..b6ee34cce0 100644 --- a/var/spack/repos/builtin/packages/r-ipred/package.py +++ b/var/spack/repos/builtin/packages/r-ipred/package.py @@ -15,6 +15,7 @@ class RIpred(RPackage): cran = "ipred" + version("0.9-14", sha256="81c83dc847d09c3db52ef15e36cd4dac38c50eead1008ddd458b9e89d7528f35") version("0.9-13", sha256="6168a062d93c2d3063c064a8f242cd3716dee99822e20363a1801261319c4c98") version("0.9-12", sha256="d6e1535704d39415a799d7643141ffa4f6f55597f03e763f4ccd5d8106005843") version("0.9-9", sha256="0da87a70730d5a60b97e46b2421088765e7d6a7cc2695757eba0f9d31d86416f") diff --git a/var/spack/repos/builtin/packages/r-irkernel/package.py b/var/spack/repos/builtin/packages/r-irkernel/package.py index 14dee52736..363493de09 100644 --- a/var/spack/repos/builtin/packages/r-irkernel/package.py +++ b/var/spack/repos/builtin/packages/r-irkernel/package.py @@ -16,6 +16,7 @@ class RIrkernel(RPackage): cran = "IRkernel" + version("1.3.2", sha256="e1c6d8bddc23e5039dd9c537feb371f937d60028fb753b90345698c58ae424a6") version("1.3.1", sha256="3186e3a177c7246d45218af55f8b10836540e68a2d106858a0385f7d741b640c") version("1.3", sha256="5a7fcbfd978dfb3cca6702a68a21c147551995fc400084ae8382ffcbbdae1903") version("1.2", sha256="5fb4dbdb741d05043120a8be0eb73f054b607d9854f314bd79cfec08d219ff91") diff --git a/var/spack/repos/builtin/packages/r-janitor/package.py b/var/spack/repos/builtin/packages/r-janitor/package.py index 6843b7bd23..656c4bd2a8 100644 --- a/var/spack/repos/builtin/packages/r-janitor/package.py +++ b/var/spack/repos/builtin/packages/r-janitor/package.py @@ -22,6 +22,7 @@ class RJanitor(RPackage): cran = "janitor" + version("2.2.0", sha256="29d5d0185e4e824bb38f905b158162a12f52dc01c2e8a487fc730ce46bf6baae") version("2.1.0", sha256="d60615940fbe174f67799c8abc797f27928eca4ac180418527c5897a4aaad826") version("1.2.0", sha256="5e15a2292c65c5ddd6160289dec2604b05a813651a2be0d7854ace4548a32b8c") version("1.1.1", sha256="404b41f56e571fab4c95ef62e79cb4f3bb34d5bb6e4ea737e748ff269536176b") @@ -30,6 +31,7 @@ class RJanitor(RPackage): depends_on("r@3.1.2:", type=("build", "run")) depends_on("r-dplyr@0.7.0:", type=("build", "run")) depends_on("r-dplyr@1.0.0:", type=("build", "run"), when="@2.1.0:") + depends_on("r-hms", type=("build", "run"), when="@2.2.0:") depends_on("r-lifecycle", type=("build", "run"), when="@2.1.0:") depends_on("r-lubridate", type=("build", "run"), when="@2.1.0:") depends_on("r-magrittr", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-jpeg/package.py b/var/spack/repos/builtin/packages/r-jpeg/package.py index d6d6d3cc82..d58499fa00 100644 --- a/var/spack/repos/builtin/packages/r-jpeg/package.py +++ b/var/spack/repos/builtin/packages/r-jpeg/package.py @@ -15,6 +15,7 @@ class RJpeg(RPackage): cran = "jpeg" + version("0.1-10", sha256="c8d9f609c3088f91ec4853d6cc0e66511038a465811dea79ca6a0c09519178ca") version("0.1-9", sha256="01a175442ec209b838a56a66a3908193aca6f040d537da7838d9368e46913072") version("0.1-8.1", sha256="1db0a4976fd9b2ae27a37d3e856cca35bc2909323c7a40724846a5d3c18915a9") version("0.1-8", sha256="d032befeb3a414cefdbf70ba29a6c01541c54387cc0a1a98a4022d86cbe60a16") diff --git a/var/spack/repos/builtin/packages/r-jsonify/package.py b/var/spack/repos/builtin/packages/r-jsonify/package.py index 62981143c0..56ff80c3a1 100644 --- a/var/spack/repos/builtin/packages/r-jsonify/package.py +++ b/var/spack/repos/builtin/packages/r-jsonify/package.py @@ -16,6 +16,7 @@ class RJsonify(RPackage): cran = "jsonify" + version("1.2.2", sha256="3745e962592f021a3deaed8b2f6b99c4f7181f28e095300a96d1c2b08af4af2f") version("1.2.1", sha256="929191ab32e34af6a02ad991e29314cc78ea40763fcf232388ef2d132137fbce") depends_on("r@3.3.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-kableextra/package.py b/var/spack/repos/builtin/packages/r-kableextra/package.py new file mode 100644 index 0000000000..67fa2cb848 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-kableextra/package.py @@ -0,0 +1,37 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RKableextra(RPackage): + """Construct Complex Table with 'kable' and Pipe Syntax. + + Build complex HTML or 'LaTeX' tables using 'kable()' from 'knitr' and the + piping syntax from 'magrittr'. Function 'kable()' is a light weight table + generator coming from 'knitr'. This package simplifies the way to + manipulate the HTML or 'LaTeX' codes generated by 'kable()' and allows + users to construct complex tables and customize styles using a readable + syntax.""" + + cran = "kableExtra" + + version("1.3.4", sha256="091ffac282cf9257edcec1a06da38b5e6516f111296bedb934e32f5692ffbbb0") + + depends_on("r@3.1.0:", type=("build", "run")) + depends_on("r-knitr@1.16:", type=("build", "run")) + depends_on("r-magrittr", type=("build", "run")) + depends_on("r-stringr@1.0:", type=("build", "run")) + depends_on("r-xml2@1.1.1:", type=("build", "run")) + depends_on("r-rvest", type=("build", "run")) + depends_on("r-rmarkdown@1.6.0:", type=("build", "run")) + depends_on("r-scales", type=("build", "run")) + depends_on("r-viridislite", type=("build", "run")) + depends_on("r-htmltools", type=("build", "run")) + depends_on("r-rstudioapi", type=("build", "run")) + depends_on("r-glue", type=("build", "run")) + depends_on("r-webshot", type=("build", "run")) + depends_on("r-digest", type=("build", "run")) + depends_on("r-svglite", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-kernlab/package.py b/var/spack/repos/builtin/packages/r-kernlab/package.py index 2034f1f07c..c4afc80489 100644 --- a/var/spack/repos/builtin/packages/r-kernlab/package.py +++ b/var/spack/repos/builtin/packages/r-kernlab/package.py @@ -16,6 +16,7 @@ class RKernlab(RPackage): cran = "kernlab" + version("0.9-32", sha256="654ef34e343deb4d2c4c139a44e5397d6e38876088ce1c53c7deb087935d6fdc") version("0.9-31", sha256="7359c665c1c5e6780e1ce44b143347c8eec839301c3079d7f19e29159873278a") version("0.9-30", sha256="48fc3a839ae57e8ab6ec26a34093ca3306391e7b271bef6e69812e2b4859ee81") version("0.9-29", sha256="c3da693a0041dd34f869e7b63a8d8cf7d4bc588ac601bcdddcf7d44f68b3106f") diff --git a/var/spack/repos/builtin/packages/r-klar/package.py b/var/spack/repos/builtin/packages/r-klar/package.py index ba6e7e174a..efc23d7d0b 100644 --- a/var/spack/repos/builtin/packages/r-klar/package.py +++ b/var/spack/repos/builtin/packages/r-klar/package.py @@ -20,6 +20,7 @@ class RKlar(RPackage): cran = "klaR" + version("1.7-2", sha256="8035c3edb8257973184ad5a2109fc7c77c32da913cb9dd0c2f1c373e6fccbd61") version("1.7-1", sha256="0354bafb1a202bc439660ecfcfe78359bc2881a69d15ff64afa049e4eb171d25") version("1.7-0", sha256="b4795250ef19fd1b5e1b9a59343fd01159a33dbdbb504a06258220e37a718198") version("0.6-15", sha256="5bfe5bc643f8a64b222317732c26e9f93be297cdc318a869f15cc9ab0d9e0fae") diff --git a/var/spack/repos/builtin/packages/r-knitr/package.py b/var/spack/repos/builtin/packages/r-knitr/package.py index 39ea89634c..71eb84b4f9 100644 --- a/var/spack/repos/builtin/packages/r-knitr/package.py +++ b/var/spack/repos/builtin/packages/r-knitr/package.py @@ -33,11 +33,10 @@ class RKnitr(RPackage): depends_on("r@3.2.3:", type=("build", "run"), when="@1.23:") depends_on("r@3.3.0:", type=("build", "run"), when="@1.39:") - depends_on("pandoc", type="build") - depends_on("py-rst2pdf", type=("build", "run")) depends_on("r-evaluate@0.10:", type=("build", "run")) depends_on("r-evaluate@0.15:", type=("build", "run"), when="@1.39:") depends_on("r-highr", type=("build", "run")) + depends_on("r-yaml@2.1.19:", type=("build", "run")) depends_on("r-xfun", type=("build", "run"), when="@1.23:") depends_on("r-xfun@0.15:", type=("build", "run"), when="@1.30") depends_on("r-xfun@0.19:", type=("build", "run"), when="@1.31") @@ -45,7 +44,8 @@ class RKnitr(RPackage): depends_on("r-xfun@0.27:", type=("build", "run"), when="@1.37:") depends_on("r-xfun@0.29:", type=("build", "run"), when="@1.39:") depends_on("r-xfun@0.34:", type=("build", "run"), when="@1.42:") - depends_on("r-yaml@2.1.19:", type=("build", "run")) + depends_on("pandoc", type="build") + depends_on("py-rst2pdf", type=("build", "run")) depends_on("r-digest", type=("build", "run"), when="@:1.17") depends_on("r-formatr", type=("build", "run"), when="@:1.14") diff --git a/var/spack/repos/builtin/packages/r-ks/package.py b/var/spack/repos/builtin/packages/r-ks/package.py index 24a8026346..ca4166cb67 100644 --- a/var/spack/repos/builtin/packages/r-ks/package.py +++ b/var/spack/repos/builtin/packages/r-ks/package.py @@ -16,6 +16,7 @@ class RKs(RPackage): cran = "ks" + version("1.14.0", sha256="2db9c56b7b0217b324bbf1e0f66bb94d3f7067a75c5823cbc7d369d63bbb4391") version("1.13.5", sha256="d1c4d06d704f301628455787ba929add1e774debc343d0952a768abea6cc7815") version("1.13.3", sha256="defb80df665d987f1751899f7a9809cb5a770f3c74266d7fbc7b9493616dce73") version("1.11.7", sha256="6a6d9c2366e85a4c6af39b798f3798d20a42615ddfcebcedf6cf56087cdfd2b8") @@ -24,6 +25,7 @@ class RKs(RPackage): version("1.11.2", sha256="9dfd485096e1e67abc7dfcb7b76a83de110dd15bcfeffe5c899605b3a5592961") depends_on("r@2.10:", type=("build", "run")) + depends_on("r@2.10.0:", type=("build", "run"), when="@1.14.0:") depends_on("r-fnn@1.1:", type=("build", "run")) depends_on("r-kernlab", type=("build", "run")) depends_on("r-kernsmooth@2.22:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-labelled/package.py b/var/spack/repos/builtin/packages/r-labelled/package.py index bdb4abba2d..c1db80844b 100644 --- a/var/spack/repos/builtin/packages/r-labelled/package.py +++ b/var/spack/repos/builtin/packages/r-labelled/package.py @@ -16,6 +16,7 @@ class RLabelled(RPackage): cran = "labelled" + version("2.11.0", sha256="eddc5299ca448ea9c244960af65b95f4164495febd609f719e0f453598a0e5dd") version("2.10.0", sha256="5e93e29dcbbf0f6273b502b744695426e238ffe106f1db2bb5daeb1f17c9c40a") version("2.9.1", sha256="9eb10b245f64f3fb7346121aa4cd98638946e1cc4208dd5e28791ef8fd62fa40") version("2.9.0", sha256="36ac0e169ee065a8bced9417efeb85d62e1504a590d4321667d8a6213285d639") diff --git a/var/spack/repos/builtin/packages/r-lava/package.py b/var/spack/repos/builtin/packages/r-lava/package.py index 6b03325086..7cc14c9f5a 100644 --- a/var/spack/repos/builtin/packages/r-lava/package.py +++ b/var/spack/repos/builtin/packages/r-lava/package.py @@ -21,6 +21,7 @@ class RLava(RPackage): cran = "lava" + version("1.7.2.1", sha256="d42b1f5c7e4e76718e4f014c44608295f82b5de0eb25ce8e9b35c40c7839ef2e") version("1.7.0", sha256="3078da69f3828812bcd093acc2d1cd2c8cbc8480d81da222ae49a55bcb2e5e24") version("1.6.10", sha256="7a88f8a885872e2abb3011c446e9e1c4884cd4dbe6ab4cfe9207538e5560232e") version("1.6.8.1", sha256="6d243fc86c67c78ff4763502d84ff2f0889c2e55d1a59afefb7a762887473ffa") diff --git a/var/spack/repos/builtin/packages/r-lavaan/package.py b/var/spack/repos/builtin/packages/r-lavaan/package.py index a9f851d951..8049fbb6f2 100644 --- a/var/spack/repos/builtin/packages/r-lavaan/package.py +++ b/var/spack/repos/builtin/packages/r-lavaan/package.py @@ -14,6 +14,7 @@ class RLavaan(RPackage): cran = "lavaan" + version("0.6-15", sha256="9a43f3e999f9b3003a8c46a615902e01d6701d28a871d657751dd2ff3928ed9b") version("0.6-12", sha256="8048273e4102f8355ba123c8aff94a9e5a8e9ac9e02a73e986b106ceed4d079e") version("0.6-11", sha256="2cc193b82463a865cd8dadb7332409fdebf47e4035d5fe8dbf3414a7ae18d308") version("0.6-10", sha256="4d6944eb6d5743e7a2a2c7b56aec5d5de78585a52789be235839fb9f5f468c37") @@ -25,3 +26,4 @@ class RLavaan(RPackage): depends_on("r-mnormt", type=("build", "run")) depends_on("r-pbivnorm", type=("build", "run")) depends_on("r-numderiv", type=("build", "run")) + depends_on("r-quadprog", type=("build", "run"), when="@0.6-15:") diff --git a/var/spack/repos/builtin/packages/r-leaflet/package.py b/var/spack/repos/builtin/packages/r-leaflet/package.py index 0f88ffae8a..1691bc4ede 100644 --- a/var/spack/repos/builtin/packages/r-leaflet/package.py +++ b/var/spack/repos/builtin/packages/r-leaflet/package.py @@ -15,6 +15,7 @@ class RLeaflet(RPackage): cran = "leaflet" + version("2.1.2", sha256="26d8671e8c99d85a4c257d8fb8c07ba899a2b95f801652598578f5cc5c724039") version("2.1.1", sha256="32f6a043759a0d2d98ea05739b7b4c55a266aa01272e48243e3c44046c7a5677") version("2.0.4.1", sha256="b0f038295f1de5d32d9ffa1d0dbc1562320190f2f1365f3a5e95863fff88901f") version("2.0.2", sha256="fa448d20940e01e953e0706fc5064b0fa347e69fa967792599eb03c52b2e3114") diff --git a/var/spack/repos/builtin/packages/r-lfe/package.py b/var/spack/repos/builtin/packages/r-lfe/package.py index 0c0a4453c9..b28fe938b2 100644 --- a/var/spack/repos/builtin/packages/r-lfe/package.py +++ b/var/spack/repos/builtin/packages/r-lfe/package.py @@ -22,6 +22,7 @@ class RLfe(RPackage): cran = "lfe" + version("2.9-0", sha256="7c9a9cd74ad98c65b67477eb6924409d7e372d01d7ed50fa2edb6fa34e02223c") version("2.8-8", sha256="0fc22928fa16f22ee66c8e426a0e994346ad2f67b3c5aea597f3eeffbd85ab71") version("2.8-7.1", sha256="d6a1efd8c43f84fa291e4959938f16e85bf5feef113515aaca1fe90075a78c50") version("2.8-6", sha256="bf5fd362e9722e871a5236f30da562c489ae6506b667609b9465eefa8f101612") diff --git a/var/spack/repos/builtin/packages/r-lhs/package.py b/var/spack/repos/builtin/packages/r-lhs/package.py index f83dfc8e4e..ef673901ee 100644 --- a/var/spack/repos/builtin/packages/r-lhs/package.py +++ b/var/spack/repos/builtin/packages/r-lhs/package.py @@ -14,6 +14,7 @@ class RLhs(RPackage): cran = "lhs" + version("1.1.6", sha256="e37fce44efe6a371677ba2f72f9e1e48270a0fdc60872d05def89270586cd23f") version("1.1.5", sha256="7a3c6fdcc953490e51026e17a0b1a9dc0ca8d03e6fc989457a7cdda2075b6339") version("1.1.3", sha256="e43b8d48db1cf26013697e2a798ed1d31d1ee1790f2ebfecb280176c0e0c06d1") version("1.1.1", sha256="903e9f2adde87f6f9ad41dd52ff83d28a645dba69934c7535142cb48f10090dc") diff --git a/var/spack/repos/builtin/packages/r-lme4/package.py b/var/spack/repos/builtin/packages/r-lme4/package.py index f585fd8c30..6cf7ff3fe1 100644 --- a/var/spack/repos/builtin/packages/r-lme4/package.py +++ b/var/spack/repos/builtin/packages/r-lme4/package.py @@ -16,6 +16,7 @@ class RLme4(RPackage): cran = "lme4" + version("1.1-33", sha256="d956a5ed7cbcc016114a836bad89acf6cdafcd0f82a7d85e3805ced936b40910") version("1.1-31", sha256="5affd1e33d3fece5ec0a6c7663eb12328e64147f8aa92675ce6453c4fe72edfd") version("1.1-30", sha256="fdabdfc4b64cff05ae9506a766c948a953eeb6db71761f9401b36d6d9979300f") version("1.1-29", sha256="83d97de48cc4706a5a9615b126ba1a86f1a3009d3f38b8da3e57dd619519e826") diff --git a/var/spack/repos/builtin/packages/r-lobstr/package.py b/var/spack/repos/builtin/packages/r-lobstr/package.py index 4743e55c83..4fb34a52ae 100644 --- a/var/spack/repos/builtin/packages/r-lobstr/package.py +++ b/var/spack/repos/builtin/packages/r-lobstr/package.py @@ -28,5 +28,5 @@ class RLobstr(RPackage): depends_on("r-prettyunits", type=("build", "run"), when="@1.1.2:") depends_on("r-rlang@0.3.0:", type=("build", "run")) depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@1.1.2:") - depends_on("r-rcpp", type=("build", "run")) - depends_on("r-rcpp", when="@:1.1.1") + + depends_on("r-rcpp", type=("build", "run"), when="@:1.1.1") diff --git a/var/spack/repos/builtin/packages/r-locfit/package.py b/var/spack/repos/builtin/packages/r-locfit/package.py index b3cb345c7c..3acc8f33a8 100644 --- a/var/spack/repos/builtin/packages/r-locfit/package.py +++ b/var/spack/repos/builtin/packages/r-locfit/package.py @@ -14,6 +14,7 @@ class RLocfit(RPackage): cran = "locfit" + version("1.5-9.7", sha256="48e5fcd089fbc609d8e4c62c390425fba1dd167ad95ae0bddc175cbbe1517aff") version("1.5-9.6", sha256="1ee89e4003cb769feae61ada7ac0a971df30644824f7ed84a21dd5719f713476") version("1.5-9.5", sha256="fd9f2bad9d8beec8be4843dc80e38ebe0f388835a7003490f67e57eeb9e6de23") version("1.5-9.4", sha256="d9d3665c5f3d49f698fb4675daf40a0550601e86db3dc00f296413ceb1099ced") diff --git a/var/spack/repos/builtin/packages/r-log4r/package.py b/var/spack/repos/builtin/packages/r-log4r/package.py index 82592df87c..c3fce35ff6 100644 --- a/var/spack/repos/builtin/packages/r-log4r/package.py +++ b/var/spack/repos/builtin/packages/r-log4r/package.py @@ -14,6 +14,7 @@ class RLog4r(RPackage): cran = "log4r" + version("0.4.3", sha256="dfe3d49d35a8d8f3ad63f156d18e860540a01bd0af0e343cbab3e31a2cf5904c") version("0.4.2", sha256="924a020565dcd05a2bc8283285fcae60f6b58b35e1be7c55acc0c703c7edfe34") version("0.3.2", sha256="14ba6b096283279f0accbde26a600771ab2df271db6c8eeb04d6f113107825a3") version("0.3.0", sha256="8e5d0221298410e48bee9d9a983a23e1834ce88592f9d931471bfdb05f37a691") diff --git a/var/spack/repos/builtin/packages/r-lpsolve/package.py b/var/spack/repos/builtin/packages/r-lpsolve/package.py index b0eea97aa4..3f0aa0a9cf 100644 --- a/var/spack/repos/builtin/packages/r-lpsolve/package.py +++ b/var/spack/repos/builtin/packages/r-lpsolve/package.py @@ -17,6 +17,7 @@ class RLpsolve(RPackage): cran = "lpSolve" + version("5.6.18", sha256="751e1926fcd81b852b6c0d5ea7ecd9311ef6fbdbce9143b7872fea79590de712") version("5.6.17", sha256="f725802bd9dc05c6913daf48f2458441ad4d2996056d0942737886d8b76c9288") version("5.6.16", sha256="18a11e5184914e02b056d3d8f54ad92e4bbce651d930d61430570b4ae2ecbb2a") version("5.6.15", sha256="4627be4178abad34fc85a7d264c2eb5e27506f007e46687b0b8a4f8fbdf4f3ba") diff --git a/var/spack/repos/builtin/packages/r-lubridate/package.py b/var/spack/repos/builtin/packages/r-lubridate/package.py index f26276e961..0d389012c5 100644 --- a/var/spack/repos/builtin/packages/r-lubridate/package.py +++ b/var/spack/repos/builtin/packages/r-lubridate/package.py @@ -34,5 +34,5 @@ class RLubridate(RPackage): depends_on("r-rcpp@0.12.13:", type=("build", "run"), when="@:1.7") depends_on("r-timechange@0.1.1:", type=("build", "run"), when="@1.9.0:") depends_on("r-stringr", type=("build", "run"), when="@:1.7.4") - depends_on("r-cpp11@0.2.7:", type=("build", "run"), when="@1.8:") - depends_on("r-cpp11", when="@:1.8.0") + depends_on("r-cpp11", type=("build", "run"), when="@:1.8.0") + depends_on("r-cpp11@0.2.7:", type=("build", "run"), when="@1.8.0") diff --git a/var/spack/repos/builtin/packages/r-lwgeom/package.py b/var/spack/repos/builtin/packages/r-lwgeom/package.py index 001cc83ddd..9476506fc2 100644 --- a/var/spack/repos/builtin/packages/r-lwgeom/package.py +++ b/var/spack/repos/builtin/packages/r-lwgeom/package.py @@ -15,6 +15,7 @@ class RLwgeom(RPackage): cran = "lwgeom" + version("0.2-11", sha256="7fd73cf58981f9566d946bf63ed6575ea0c70634abeaf4e60ef9615040d63419") version("0.2-9", sha256="69b2a2efdafb0b32c801932eee7cd2c4b8402cede6487f4dfea4e14873091aa8") version("0.2-8", sha256="f48a92de222da0590b37a30d5cbf2364555044a842795f6b488afecc650b8b34") version("0.2-5", sha256="4a1d93f96c10c2aac173d8186cf7d7bef7febcb3cf066a7f45da32251496d02f") diff --git a/var/spack/repos/builtin/packages/r-magick/package.py b/var/spack/repos/builtin/packages/r-magick/package.py index a2c75ccaa3..9ea716bb7f 100644 --- a/var/spack/repos/builtin/packages/r-magick/package.py +++ b/var/spack/repos/builtin/packages/r-magick/package.py @@ -22,6 +22,7 @@ class RMagick(RPackage): cran = "magick" + version("2.7.4", sha256="e28d67737590f8c19e4cf00a9c74e59d0e45f9ece363ed105b5f40e821e8f02f") version("2.7.3", sha256="83877b2e23ea43fbc1164de9c2422eafbe7858393ac384df5adf3a7eec122441") version("2.6.0", sha256="66585336e3ff18793ae9e2726af67a6672622f270468670ab5fe5e013bc48ecc") version("2.1", sha256="ef4fb8fc1c5a9cfcc36b22485a0e17d622f61e55803b1e7423fd15f0550de7df") diff --git a/var/spack/repos/builtin/packages/r-maldiquant/package.py b/var/spack/repos/builtin/packages/r-maldiquant/package.py index 5372f05da4..a38e89146f 100644 --- a/var/spack/repos/builtin/packages/r-maldiquant/package.py +++ b/var/spack/repos/builtin/packages/r-maldiquant/package.py @@ -20,6 +20,7 @@ class RMaldiquant(RPackage): cran = "MALDIquant" + version("1.22.1", sha256="0a52a55dbe76a7e7ca50c5555fea4381eeda0c215c66e420d8dc9bfd2992411c") version("1.21", sha256="0771f82034aa6a77af67f3572c900987b7e6b578d04d707c6e06689d021a2ff8") version("1.19.3", sha256="a730327c1f8d053d29e558636736b7b66d0671a009e0004720b869d2c76ff32c") version("1.19.2", sha256="8c6efc4ae4f1af4770b079db29743049f2fd597bcdefeaeb16f623be43ddeb87") diff --git a/var/spack/repos/builtin/packages/r-mapproj/package.py b/var/spack/repos/builtin/packages/r-mapproj/package.py index eb1c3d5a50..4ec1e86923 100644 --- a/var/spack/repos/builtin/packages/r-mapproj/package.py +++ b/var/spack/repos/builtin/packages/r-mapproj/package.py @@ -13,6 +13,7 @@ class RMapproj(RPackage): cran = "mapproj" + version("1.2.11", sha256="db2d201cc939de26717566066bf44225a967ccde6fc34731af845f03c086347d") version("1.2.9", sha256="da28fab490072e0b2ff5e124092d6b3146e4c01b2386e23a2ea4b0e9fc72df82") version("1.2.8", sha256="865f108f1ee54cda38571b86cd46063a903824d9b4eabfdf75218023d08a7781") version("1.2.7", sha256="f0081281b08bf3cc7052c4f1360d6d3c20d9063be57754448ad9b48ab0d34c5b") diff --git a/var/spack/repos/builtin/packages/r-markdown/package.py b/var/spack/repos/builtin/packages/r-markdown/package.py index f96960aee5..aa7240368c 100644 --- a/var/spack/repos/builtin/packages/r-markdown/package.py +++ b/var/spack/repos/builtin/packages/r-markdown/package.py @@ -17,6 +17,7 @@ class RMarkdown(RPackage): cran = "markdown" + version("1.6", sha256="46228b8d8161ae4b651b4662364eb35a3b91e6a7a457fe99d0e709f2a6f559ea") version("1.3", sha256="b1773e94e7b927c3a8540c2704b06e0f7721a0e3538a93abd58fff420ecb30f1") version("1.1", sha256="8d8cd47472a37362e615dbb8865c3780d7b7db694d59050e19312f126e5efc1b") version("1.0", sha256="172d8072d1829644ee6cdf54282a55718e2cfe9c9915d3589ca5f9a016f8d9a6") @@ -26,5 +27,7 @@ class RMarkdown(RPackage): depends_on("r@2.11.1:", type=("build", "run")) depends_on("r-commonmark", type=("build", "run"), when="@1.3:") - depends_on("r-mime@0.3:", type=("build", "run")) + depends_on("r-commonmark@1.9.0:", type=("build", "run"), when="@1.6:") depends_on("r-xfun", type=("build", "run"), when="@1.1:") + depends_on("r-xfun@0.38:", type=("build", "run"), when="@1.6:") + depends_on("r-mime@0.3:", type=("build", "run"), when="@:1.3") diff --git a/var/spack/repos/builtin/packages/r-mass/package.py b/var/spack/repos/builtin/packages/r-mass/package.py index db92f9e1bb..3ccd755dd3 100644 --- a/var/spack/repos/builtin/packages/r-mass/package.py +++ b/var/spack/repos/builtin/packages/r-mass/package.py @@ -14,6 +14,7 @@ class RMass(RPackage): cran = "MASS" + version("7.3-59", sha256="454200bec7a52835fbb7f9fe8e01a7aaa728b3ab87b068fc6d900e01c930da5a") version("7.3-58.1", sha256="f704e4e2fb131740d023ae1755c925c2e684886a3061b08e26397135f1231420") version("7.3-57", sha256="bd8b880105bc1aadb2db699086f74bd92a8611287979a24243187f9d80795a8d") version("7.3-55", sha256="65299cbc8f3fd5e09cb3535eabcb3faad2308e01d5ba9422145cc04d7d0c31a4") @@ -26,3 +27,4 @@ class RMass(RPackage): depends_on("r@3.1.0:", type=("build", "run")) depends_on("r@3.3.0:", type=("build", "run"), when="@7.3-55:") + depends_on("r@4.2.0:", type=("build", "run"), when="@7.3-59:") diff --git a/var/spack/repos/builtin/packages/r-matrix/package.py b/var/spack/repos/builtin/packages/r-matrix/package.py index 18f436dbf8..6b227adaec 100644 --- a/var/spack/repos/builtin/packages/r-matrix/package.py +++ b/var/spack/repos/builtin/packages/r-matrix/package.py @@ -16,6 +16,7 @@ class RMatrix(RPackage): cran = "Matrix" + version("1.5-4", sha256="15ceb61993d61b442068104abb46e6d91b5a1179c01eeb64563b853abab66f06") version("1.5-1", sha256="557dba0358172d67dc63eb5db90841915bb5ce1528f941a8005ae808d635575d") version("1.4-1", sha256="42b24f1d1e94482b0ff0ef1292e2df29f69694bdbee47b3d6bfeec46fafb2f7e") version("1.4-0", sha256="c2b463702e4051b621f5e2b091a33f883f1caa97703d65f7a52b78caf81206f6") diff --git a/var/spack/repos/builtin/packages/r-matrixstats/package.py b/var/spack/repos/builtin/packages/r-matrixstats/package.py index 21db329470..f2941b0258 100644 --- a/var/spack/repos/builtin/packages/r-matrixstats/package.py +++ b/var/spack/repos/builtin/packages/r-matrixstats/package.py @@ -17,6 +17,7 @@ class RMatrixstats(RPackage): cran = "matrixStats" + version("0.63.0", sha256="c000b60421742eb035ff4ceedd3e588a79e4b28985484f0c81361e5a6c351f5f") version("0.62.0", sha256="85e2016b6dd20cbfe32d38a2ef2578ae80e688d9a3590aefd1d2f4bf4bd44eca") version("0.61.0", sha256="dbd3c0ec59b1ae62ff9b4c2c90c4687cbd680d1796f6fdd672319458d4d2fd9a") version("0.58.0", sha256="8367b4b98cd24b6e40022cb2b11e907aa0bcf5ee5b2f89fefb186f53661f4b49") diff --git a/var/spack/repos/builtin/packages/r-mclogit/package.py b/var/spack/repos/builtin/packages/r-mclogit/package.py new file mode 100644 index 0000000000..a2c47b2e34 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-mclogit/package.py @@ -0,0 +1,25 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RMclogit(RPackage): + """Multinomial Logit Models, with or without Random Effects or + Overdispersion. + + Provides estimators for multinomial logit models in their conditional logit + and baseline logit variants, with or without random effects, with or + without overdispersion. Random effects models are estimated using the PQL + technique (based on a Laplace approximation) or the MQL technique (based on + a Solomon-Cox approximation). Estimates should be treated with caution if + the group sizes are small.""" + + cran = "mclogit" + + version("0.9.6", sha256="9adc5f6d8649960abe009c30d9b4c448ff7d174c455a594cbf104a33d5a36f69") + + depends_on("r-matrix", type=("build", "run")) + depends_on("r-memisc", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-memisc/package.py b/var/spack/repos/builtin/packages/r-memisc/package.py new file mode 100644 index 0000000000..1c9fd4893f --- /dev/null +++ b/var/spack/repos/builtin/packages/r-memisc/package.py @@ -0,0 +1,28 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RMemisc(RPackage): + """Management of Survey Data and Presentation of Analysis Results. + + An infrastructure for the management of survey data including value labels, + definable missing values, recoding of variables, production of code books, + and import of (subsets of) 'SPSS' and 'Stata' files is provided. Further, + the package allows to produce tables and data frames of arbitrary + descriptive statistics and (almost) publication-ready tables of regression + model estimates, which can be exported to 'LaTeX' and HTML.""" + + cran = "memisc" + + version("0.99.31.6", sha256="52336b4ffc6e60c3ed10ccc7417231582b0d2e4c5c3b2184396a7d3ca9c1d96e") + + depends_on("r@3.3.0:", type=("build", "run")) + depends_on("r-lattice", type=("build", "run")) + depends_on("r-mass", type=("build", "run")) + depends_on("r-data-table", type=("build", "run")) + depends_on("r-yaml", type=("build", "run")) + depends_on("r-jsonlite", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-memuse/package.py b/var/spack/repos/builtin/packages/r-memuse/package.py index 0fdb35beb4..f4eeb82b08 100644 --- a/var/spack/repos/builtin/packages/r-memuse/package.py +++ b/var/spack/repos/builtin/packages/r-memuse/package.py @@ -18,6 +18,7 @@ class RMemuse(RPackage): maintainers("dorton21") + version("4.2-3", sha256="906fdff665e2aed0e98ee3181233a5c62bd521abfce6ab1cb215c71c95d12620") version("4.2-2", sha256="63dc2b2ad41da9af5d9b71c1fa9b03f37d1d58db2ed63355c303349d2247b7e5") version("4.2-1", sha256="f5e9dbaad4efbbfe219a93f446e318a00cad5b294bfc60ca2146eca894b47cf3") version("4.1-0", sha256="58d6d1ca5d6bd481f4ed299eff6a9d5660eb0f8db1abe54c49e144093cba72ad") diff --git a/var/spack/repos/builtin/packages/r-metafor/package.py b/var/spack/repos/builtin/packages/r-metafor/package.py index 534c80fa47..0e38a8f150 100644 --- a/var/spack/repos/builtin/packages/r-metafor/package.py +++ b/var/spack/repos/builtin/packages/r-metafor/package.py @@ -29,11 +29,13 @@ class RMetafor(RPackage): cran = "metafor" + version("4.0-0", sha256="5cd552ebaf225b745c2e4d944ca80986dd1ad6f1a4c902fb646f3cb11b8dc23b") version("3.8-1", sha256="d694577f954144d8a5eeab6521fe1c87e68ddf9ecfd7ccc915d01533371b0514") depends_on("r@4.0.0:", type=("build", "run")) depends_on("r-matrix", type=("build", "run")) depends_on("r-metadat", type=("build", "run")) + depends_on("r-numderiv", type=("build", "run"), when="@4.0-0:") depends_on("r-nlme", type=("build", "run")) depends_on("r-mathjaxr", type=("build", "run")) depends_on("r-pbapply", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-mgcv/package.py b/var/spack/repos/builtin/packages/r-mgcv/package.py index b73a3050f5..642fd0e668 100644 --- a/var/spack/repos/builtin/packages/r-mgcv/package.py +++ b/var/spack/repos/builtin/packages/r-mgcv/package.py @@ -19,6 +19,7 @@ class RMgcv(RPackage): cran = "mgcv" + version("1.8-42", sha256="087fc38b64ad06f2149eafc54f2679dd8840cf6fc488e66cf131e3c1de2db6c7") version("1.8-41", sha256="2f7a030fe2be75edef6bd96147df46c2262f3cdc44c383d8f82b401df44fe690") version("1.8-40", sha256="dbe627266c3b339232e2d4228d5370ba88c86540319e6891d161242efba7e4a5") version("1.8-38", sha256="cd12ed5787d6fdcead34e782e48b62b3f9efd523616c906e2da77bd9c142ddbb") diff --git a/var/spack/repos/builtin/packages/r-mice/package.py b/var/spack/repos/builtin/packages/r-mice/package.py index 715bfec4f8..af625c0883 100644 --- a/var/spack/repos/builtin/packages/r-mice/package.py +++ b/var/spack/repos/builtin/packages/r-mice/package.py @@ -23,6 +23,7 @@ class RMice(RPackage): cran = "mice" + version("3.15.0", sha256="3d64dd260e3dce9c4c2f7be8c99f3063769df9ccfd3a0fc827c2de0ac842e87b") version("3.14.0", sha256="f87bb73d8bfee36c6bf4f15779c59ff6b70c70ca25b1388b4ee236757276d605") version("3.12.0", sha256="575d9e650d5fc8cd66c0b5a2f1e659605052b26d61f772fff5eed81b414ef144") version("3.6.0", sha256="7bc72bdb631bc9f67d8f76ffb48a7bb275228d861075e20c24c09c736bebec5d") @@ -37,7 +38,6 @@ class RMice(RPackage): depends_on("r-rcpp", type=("build", "run")) depends_on("r-rlang", type=("build", "run")) depends_on("r-tidyr", type=("build", "run"), when="@3.12.0:") - depends_on("r-withr", type=("build", "run"), when="@3.14.0:") depends_on("r-cpp11", type=("build", "run"), when="@3.12.0:") depends_on("r-mitml", type=("build", "run"), when="@:3.6.0") @@ -45,3 +45,4 @@ class RMice(RPackage): depends_on("r-rpart", type=("build", "run"), when="@:3.6.0") depends_on("r-survival", type=("build", "run"), when="@:3.6.0") depends_on("r-mass", type=("build", "run"), when="@:3.6.0") + depends_on("r-withr", type=("build", "run"), when="@3.14.0:3.14.0") diff --git a/var/spack/repos/builtin/packages/r-mitml/package.py b/var/spack/repos/builtin/packages/r-mitml/package.py index ef42d899c6..c64e5552d0 100644 --- a/var/spack/repos/builtin/packages/r-mitml/package.py +++ b/var/spack/repos/builtin/packages/r-mitml/package.py @@ -16,6 +16,7 @@ class RMitml(RPackage): cran = "mitml" + version("0.4-5", sha256="056aec823187cc3793640d8a5e74d74093bae74260a975ceb098a83a52e2eeeb") version("0.4-3", sha256="49bd3eb68a60fb2a269e7ddca8b862e1e81e0651e2b29759482fb7bcad452102") version("0.3-7", sha256="c6f796d0059f1b093b599a89d955982fa257de9c45763ecc2cbbce10fdec1e7b") version("0.3-6", sha256="bc59bdc802eb882340393752535446560c716f12c6fca2b95f03c6af30d978de") diff --git a/var/spack/repos/builtin/packages/r-mixtools/package.py b/var/spack/repos/builtin/packages/r-mixtools/package.py index 1f2abe4622..e14c3caa9a 100644 --- a/var/spack/repos/builtin/packages/r-mixtools/package.py +++ b/var/spack/repos/builtin/packages/r-mixtools/package.py @@ -25,13 +25,17 @@ class RMixtools(RPackage): cran = "mixtools" + version("2.0.0", sha256="854e7482230b9a5dde61bab191b78e06aa8f9b0cdfe3c03e046afa133b317e0d") version("1.2.0", sha256="ef033ef13625209065d26767bf70d129972e6808927f755629f1d70a118b9023") version("1.1.0", sha256="543fd8d8dc8d4b6079ebf491cf97f27d6225e1a6e65d8fd48553ada23ba88d8f") version("1.0.4", sha256="62f4b0a17ce520c4f8ed50ab44f120e459143b461a9e420cd39056ee4fc8798c") depends_on("r@3.2:", type=("build", "run")) depends_on("r@3.5.0:", type=("build", "run"), when="@1.2.0:") + depends_on("r@4.0.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-kernlab", type=("build", "run"), when="@1.2.0:") depends_on("r-mass", type=("build", "run")) + depends_on("r-scales", type=("build", "run"), when="@2.0.0:") + depends_on("r-plotly", type=("build", "run"), when="@2.0.0:") depends_on("r-segmented", type=("build", "run")) depends_on("r-survival", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-mnormt/package.py b/var/spack/repos/builtin/packages/r-mnormt/package.py index a47e1a1006..53a9e5c2c0 100644 --- a/var/spack/repos/builtin/packages/r-mnormt/package.py +++ b/var/spack/repos/builtin/packages/r-mnormt/package.py @@ -23,5 +23,4 @@ class RMnormt(RPackage): version("1.5-5", sha256="ff78d5f935278935f1814a69e5a913d93d6dd2ac1b5681ba86b30c6773ef64ac") depends_on("r@2.2.0:", type=("build", "run")) - depends_on("r-tmvnsim@1.0-2:", type=("build", "run"), when="@2.0.2:") - depends_on("r-tmvnsim", when="@:2.0.2") + depends_on("r-tmvnsim@1.0-2:", type=("build", "run"), when="@2.0.2") diff --git a/var/spack/repos/builtin/packages/r-modelr/package.py b/var/spack/repos/builtin/packages/r-modelr/package.py index 38c935f16f..331de07b3c 100644 --- a/var/spack/repos/builtin/packages/r-modelr/package.py +++ b/var/spack/repos/builtin/packages/r-modelr/package.py @@ -14,6 +14,7 @@ class RModelr(RPackage): cran = "modelr" + version("0.1.11", sha256="94ebd506e9ccf3bf25318be6a182f8f89c3669a77b41864a0b9dbcc1d4337bd3") version("0.1.9", sha256="10e9fde89e4695bbab3de2490336f68805cc327807a809982231169963dfa9c9") version("0.1.8", sha256="825ba77d95d60cfb94920bec910872ca2ffe7790a44148b2992be2759cb361c4") version("0.1.5", sha256="45bbee387c6ba154f9f8642e9f03ea333cce0863c324ff15d23096f33f85ce5a") @@ -27,6 +28,7 @@ class RModelr(RPackage): depends_on("r-magrittr", type=("build", "run")) depends_on("r-purrr@0.2.2:", type=("build", "run")) depends_on("r-rlang@0.2.0:", type=("build", "run"), when="@0.1.3:") + depends_on("r-rlang@1.0.6:", type=("build", "run"), when="@0.1.11:") depends_on("r-tibble", type=("build", "run")) depends_on("r-tidyr@0.8.0:", type=("build", "run")) depends_on("r-tidyselect", type=("build", "run"), when="@0.1.8:") diff --git a/var/spack/repos/builtin/packages/r-multcomp/package.py b/var/spack/repos/builtin/packages/r-multcomp/package.py index ab3551d6b0..44fe434059 100644 --- a/var/spack/repos/builtin/packages/r-multcomp/package.py +++ b/var/spack/repos/builtin/packages/r-multcomp/package.py @@ -17,6 +17,7 @@ class RMultcomp(RPackage): cran = "multcomp" + version("1.4-23", sha256="425154a58bd8f2dbaff5d16e97b03473cbc0d571b1c2e4dd66a13c6d20a8cde1") version("1.4-20", sha256="328be4fa4189bde4a7bc645d9ae5ea071ebe31ed658c8c48c4e45aa8e8c42cfc") version("1.4-19", sha256="f03473b1cfbc714cd85a0ee948e2ecdb23bcdccbe95e27237ee25e9c71e3e557") version("1.4-18", sha256="107a5e65cfff158b271d7386240dc8672d8cf45313f016e0ed83767faf7c2806") diff --git a/var/spack/repos/builtin/packages/r-multcompview/package.py b/var/spack/repos/builtin/packages/r-multcompview/package.py index 916f44d0ab..e8c70124ad 100644 --- a/var/spack/repos/builtin/packages/r-multcompview/package.py +++ b/var/spack/repos/builtin/packages/r-multcompview/package.py @@ -18,4 +18,5 @@ class RMultcompview(RPackage): cran = "multcompView" + version("0.1-9", sha256="1f3993e9d51f3c7a711a881b6a20081a85ffab60c27828ceb3640a6b4c887397") version("0.1-8", sha256="123d539172ad6fc63d83d1fc7f356a5ed7b691e7803827480118bebc374fd8e5") diff --git a/var/spack/repos/builtin/packages/r-mutoss/package.py b/var/spack/repos/builtin/packages/r-mutoss/package.py index ff39c86219..4f31c30bf2 100644 --- a/var/spack/repos/builtin/packages/r-mutoss/package.py +++ b/var/spack/repos/builtin/packages/r-mutoss/package.py @@ -15,6 +15,7 @@ class RMutoss(RPackage): cran = "mutoss" + version("0.1-13", sha256="b60f6fcdce44dc60c7d34c6510047f756f1442366a3566661b22aae12f4ff141") version("0.1-12", sha256="2889ae3d502157592697124eb86adc14911e2b7fdaa7204743a376b1eeb967fa") depends_on("r@2.10.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-network/package.py b/var/spack/repos/builtin/packages/r-network/package.py index 2fec4b6638..abcdca91d0 100644 --- a/var/spack/repos/builtin/packages/r-network/package.py +++ b/var/spack/repos/builtin/packages/r-network/package.py @@ -15,6 +15,7 @@ class RNetwork(RPackage): cran = "network" + version("1.18.1", sha256="c80d70352967d8480cfa801f2a31bfe130e2ad4dbf2c07b0046e57f3013cd243") version("1.18.0", sha256="59f4b10174c87c8742c6b3c93c5e47833042375f5f872fdd23155b4a5244ce5b") version("1.17.2", sha256="9588a198807c8c68da147f479ca9af5bcb4468cf91b6a90b8044d313d9fa30f7") version("1.17.1", sha256="fc3c3a0014f8895a11c33994c9b44c6ef6cc49c7d026cd41ae6bba5ef63005a7") diff --git a/var/spack/repos/builtin/packages/r-nleqslv/package.py b/var/spack/repos/builtin/packages/r-nleqslv/package.py index 01d87b397d..453273c40c 100644 --- a/var/spack/repos/builtin/packages/r-nleqslv/package.py +++ b/var/spack/repos/builtin/packages/r-nleqslv/package.py @@ -17,5 +17,6 @@ class RNleqslv(RPackage): cran = "nleqslv" + version("3.3.4", sha256="2783e7525bcd155dd8cedf5a41b7db65cd1fa0e095cd937371448316f3930fcf") version("3.3.3", sha256="2e46dfce95ddfd7ed5208413ee41f6bdf1ae18414fb1d0c146d9da3af12ac633") version("3.3.2", sha256="f54956cf67f9970bb3c6803684c84a27ac78165055745e444efc45cfecb63fed") diff --git a/var/spack/repos/builtin/packages/r-nlme/package.py b/var/spack/repos/builtin/packages/r-nlme/package.py index ad79ba4379..ae0c1d0bce 100644 --- a/var/spack/repos/builtin/packages/r-nlme/package.py +++ b/var/spack/repos/builtin/packages/r-nlme/package.py @@ -13,6 +13,7 @@ class RNlme(RPackage): cran = "nlme" + version("3.1-162", sha256="ba6da2575554afa2614c4cba9971f8a9f8a07622d201284cb78899f3d6a2dc67") version("3.1-160", sha256="d4454623194876b083774c662fd223bc3b9e8325824cb758b8adecd5dc0d8a08") version("3.1-159", sha256="9bb05f5c3146e2d75078e668821485a3e9ca246fd5d7db2ef1963d3735d919bf") version("3.1-157", sha256="ddf2a2729dcb6cbaaf579d8093cf62fc41736648b5e8b74afc3acc7a9ae1d96c") diff --git a/var/spack/repos/builtin/packages/r-nmf/package.py b/var/spack/repos/builtin/packages/r-nmf/package.py index 88bc8f43e8..c5bf7d0e5f 100644 --- a/var/spack/repos/builtin/packages/r-nmf/package.py +++ b/var/spack/repos/builtin/packages/r-nmf/package.py @@ -18,12 +18,12 @@ class RNmf(RPackage): cran = "NMF" + version("0.26", sha256="8d44562ef5f33f3811929f944c9d029ec25526d2ddddfe7c8a5b6e23adbc2ec0") version("0.24.0", sha256="481811d35b3bbc07e9a60e2f853b05ef26581b43be9c6c4bab81151b8dcadd93") version("0.23.0", sha256="0f0cca01b37bf46fce90d2e951df609d3d377908aa607825083fd0c47cc24753") version("0.21.0", sha256="3b30c81c66066fab4a63c5611a0313418b840d8b63414db31ef0e932872d02e3") depends_on("r@3.0.0:", type=("build", "run")) - depends_on("r-pkgmaker@0.20:", type=("build", "run")) depends_on("r-registry", type=("build", "run")) depends_on("r-rngtools@1.2.3:", type=("build", "run")) depends_on("r-cluster", type=("build", "run")) @@ -38,3 +38,5 @@ class RNmf(RPackage): depends_on("r-reshape2", type=("build", "run")) depends_on("r-biocmanager", type=("build", "run"), when="@0.23.0:") depends_on("r-biobase", type=("build", "run"), when="@0.23.0:") + depends_on("r-codetools", type=("build", "run"), when="@0.26:") + depends_on("r-pkgmaker@0.20:", type=("build", "run"), when="@:0.24.0") diff --git a/var/spack/repos/builtin/packages/r-np/package.py b/var/spack/repos/builtin/packages/r-np/package.py index 0dc04e537d..de83e59ef3 100644 --- a/var/spack/repos/builtin/packages/r-np/package.py +++ b/var/spack/repos/builtin/packages/r-np/package.py @@ -19,6 +19,7 @@ class RNp(RPackage): cran = "np" + version("0.60-17", sha256="d97957cb234ec2e570fc2d02d305eadff3d71939484b3d1054ed8b67a3427f36") version("0.60-16", sha256="bef967c0195059e53c68e64d7540bf4627415c832f050c8806520ab8796e01b0") version("0.60-14", sha256="342b7f51e44eee556a9bb1f2ac9a143006019ca398fdccbb9c4562db3883d56c") version("0.60-11", sha256="a3b31b8ad70c42826076786b2b1b63b79cdbadfa55fe126773bc357686fd33a9") diff --git a/var/spack/repos/builtin/packages/r-openxlsx/package.py b/var/spack/repos/builtin/packages/r-openxlsx/package.py index 6e1dc59872..4a22bebe06 100644 --- a/var/spack/repos/builtin/packages/r-openxlsx/package.py +++ b/var/spack/repos/builtin/packages/r-openxlsx/package.py @@ -16,6 +16,7 @@ class ROpenxlsx(RPackage): cran = "openxlsx" + version("4.2.5.2", sha256="ee7089e7e5832ef22ee0d0eebf7cca5096ce23afb2bcdb58700be62526fc9b67") version("4.2.5.1", sha256="64d224380809d8d19788b02daf9d6dae45262594b81f5e013d37d34daf0945c8") version("4.2.5", sha256="65d06d2819b656ac30fc78437ee712a83fb5a7ab750f56268e5c9e578c582519") version("4.2.3", sha256="cdef89d826e50bef772af3e5eae935ca0316626a6e22f55f7631eac733b5e46f") diff --git a/var/spack/repos/builtin/packages/r-ordinal/package.py b/var/spack/repos/builtin/packages/r-ordinal/package.py index 38dfa6bd68..39fecc0214 100644 --- a/var/spack/repos/builtin/packages/r-ordinal/package.py +++ b/var/spack/repos/builtin/packages/r-ordinal/package.py @@ -24,6 +24,9 @@ class ROrdinal(RPackage): cran = "ordinal" version( + "2022.11-16", sha256="5488ad1dfa531a09d017d68d7393d376c8bc49cceeaa6a3e5f7d57b99168d493" + ) + version( "2019.12-10", sha256="7a41e7b7e852a8fa3e911f8859d36e5709ccec5ca42ee3de14a813b7aaac7725" ) version("2019.4-25", sha256="2812ad7a123cae5dbe053d1fe5f2d9935afc799314077eac185c844e3c9d79df") @@ -33,3 +36,4 @@ class ROrdinal(RPackage): depends_on("r-mass", type=("build", "run")) depends_on("r-matrix", type=("build", "run")) depends_on("r-numderiv", type=("build", "run")) + depends_on("r-nlme", type=("build", "run"), when="@2022.11-16:") diff --git a/var/spack/repos/builtin/packages/r-osqp/package.py b/var/spack/repos/builtin/packages/r-osqp/package.py index 704e5df2fe..ea3b99f654 100644 --- a/var/spack/repos/builtin/packages/r-osqp/package.py +++ b/var/spack/repos/builtin/packages/r-osqp/package.py @@ -16,6 +16,7 @@ class ROsqp(RPackage): cran = "osqp" + version("0.6.0.8", sha256="14034045ae4ae5ec4eae4944653d41d94282fa85a0cd53614ac86f34fd02ed97") version("0.6.0.7", sha256="ee6584d02341e3f1d8fab3b2cb93defd6c48d561297d82a6bedb3e7541868203") depends_on("r-rcpp@0.12.14:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-packrat/package.py b/var/spack/repos/builtin/packages/r-packrat/package.py index 6deb84b004..d095b56c66 100644 --- a/var/spack/repos/builtin/packages/r-packrat/package.py +++ b/var/spack/repos/builtin/packages/r-packrat/package.py @@ -15,6 +15,7 @@ class RPackrat(RPackage): cran = "packrat" + version("0.9.1", sha256="414013c6044d2985e69bbc8494c152716b6f81ca15b329c731cfe8f965fd3344") version("0.8.1", sha256="45db0301fa6a0a6944b070ac219cd1fa754bac24e517e59758cdc51e8aed23da") version("0.8.0", sha256="3025b9052974bec00fb09299226b80004d48e611e15a65e5a0bc49d3538844ef") version("0.7.0", sha256="e8bce1fd78f28f3a7bf56e65a2ae2c6802e69bf55466c24e1d1a4b8a5f83dcc2") diff --git a/var/spack/repos/builtin/packages/r-parallelly/package.py b/var/spack/repos/builtin/packages/r-parallelly/package.py index 883ad7935e..ac71b531f5 100644 --- a/var/spack/repos/builtin/packages/r-parallelly/package.py +++ b/var/spack/repos/builtin/packages/r-parallelly/package.py @@ -22,6 +22,7 @@ class RParallelly(RPackage): cran = "parallelly" + version("1.35.0", sha256="3f5e9b6507196aab052c5e67f8b524b75aa356731c5eaffbadde76c967ad5dcd") version("1.32.1", sha256="31c685f59ac7ff702fe2720910780378113adf0df0baf048a62eef94524cca90") version("1.31.1", sha256="40c7fc3d842fa928448e574091a521bead2367bf97545c744ca78ea9af3117da") version("1.30.0", sha256="aab080cb709bab232b2d808053efb2391eeb30a2de9497cbe474c99df89f9f3b") diff --git a/var/spack/repos/builtin/packages/r-party/package.py b/var/spack/repos/builtin/packages/r-party/package.py index 37e14ea208..53659ed838 100644 --- a/var/spack/repos/builtin/packages/r-party/package.py +++ b/var/spack/repos/builtin/packages/r-party/package.py @@ -28,6 +28,7 @@ class RParty(RPackage): cran = "party" + version("1.3-13", sha256="def05e7f0c59f1b1ecf0ab3929cff75ae8c2691aaf52292cad4371281b897e7b") version("1.3-11", sha256="3ea41a1775d40bc6d0bdf657b98d939d99f98925ac985a31c969735c56618c9c") version("1.3-10", sha256="e5892955f6ce662ade568e646d1d672c3ecbf5d4e74b4a887a353e6160f7b56a") version("1.3-9", sha256="29a1fefdb86369285ebf5d48ab51268a83e2011fb9d9f609a2250b5f0b169089") diff --git a/var/spack/repos/builtin/packages/r-partykit/package.py b/var/spack/repos/builtin/packages/r-partykit/package.py index 62f87a4609..1b7ca6c9c9 100644 --- a/var/spack/repos/builtin/packages/r-partykit/package.py +++ b/var/spack/repos/builtin/packages/r-partykit/package.py @@ -23,6 +23,7 @@ class RPartykit(RPackage): cran = "partykit" + version("1.2-20", sha256="63509aa3ed2d7417ad284c037cef66bc837fdb7a97967957e79b9fee8ed2e0da") version("1.2-16", sha256="e643d4e29c1894497e3dd5fe274783319d0044dec50282ed807cebc21736ddb2") version("1.2-15", sha256="b2e9454b2f4b9a39c9581c5871462f00acef4eeee5696ce3e32cfa1468d1e3ac") version("1.2-11", sha256="3a83332d782a235cfb5ba60cc8f1c51d46ca5477b22979a614f514d1c951c602") diff --git a/var/spack/repos/builtin/packages/r-pbapply/package.py b/var/spack/repos/builtin/packages/r-pbapply/package.py index 1c566c2ef0..1a1cf19d9a 100644 --- a/var/spack/repos/builtin/packages/r-pbapply/package.py +++ b/var/spack/repos/builtin/packages/r-pbapply/package.py @@ -17,6 +17,7 @@ class RPbapply(RPackage): cran = "pbapply" + version("1.7-0", sha256="64b8e931e0a09031c20b66173ce80a646043b8f135d329bc86226a11c6b706c0") version("1.5-0", sha256="effdfee286e5ba9534dc2ac3cee96590a37f5cd2af28c836d00c25ca9f070a55") version("1.4-3", sha256="8fe6287535be766b5a688810e2cc1ca4e668ac6b42b6e832473fe5701133eb21") version("1.4-1", sha256="b3633349181db944e1dfc4422b4728a6562e454117a232cbb51633906cd27cad") diff --git a/var/spack/repos/builtin/packages/r-pbdzmq/package.py b/var/spack/repos/builtin/packages/r-pbdzmq/package.py index 4f57b65306..77d18bbb19 100644 --- a/var/spack/repos/builtin/packages/r-pbdzmq/package.py +++ b/var/spack/repos/builtin/packages/r-pbdzmq/package.py @@ -20,6 +20,7 @@ class RPbdzmq(RPackage): cran = "pbdZMQ" + version("0.3-9", sha256="d033238d0a9810581f6b40c7c75263cfc495a585653bbff98e957c37954e0fb6") version("0.3-8", sha256="eded4ccf6ee54a59e06061f1c6e67a8ec36e03c6ab2318af64446d8f95505465") version("0.3-7", sha256="df2d2be14b2f57a64d76cdda4c01fd1c3d9aa12221c63524c01c71849df11808") version("0.3-6", sha256="9944c8c44221aed1dbd7763ad9ec52c0ad2611d37bee25971ca16f02e8e8c37b") diff --git a/var/spack/repos/builtin/packages/r-pegas/package.py b/var/spack/repos/builtin/packages/r-pegas/package.py index b7a5e37e65..717330f6cf 100644 --- a/var/spack/repos/builtin/packages/r-pegas/package.py +++ b/var/spack/repos/builtin/packages/r-pegas/package.py @@ -20,6 +20,7 @@ class RPegas(RPackage): maintainers("dorton21") + version("1.2", sha256="9d39f3937c09ea6e2189949a23879bb366f5ca1df3a6aac411c7d2b73837ad55") version("1.1", sha256="87ba91a819496dfc3abdcc792ff853a6d49caae6335598a24c23e8851505ed59") version("0.14", sha256="7df90e6c4a69e8dbed2b3f68b18f1975182475bf6f86d4159256b52fd5332053") diff --git a/var/spack/repos/builtin/packages/r-phytools/package.py b/var/spack/repos/builtin/packages/r-phytools/package.py index da234dfb0c..25eba89d62 100644 --- a/var/spack/repos/builtin/packages/r-phytools/package.py +++ b/var/spack/repos/builtin/packages/r-phytools/package.py @@ -30,6 +30,7 @@ class RPhytools(RPackage): cran = "phytools" + version("1.5-1", sha256="f8be59abbff1f5032be4523c361da53b0d5b71677fedebba6d7cbae2dca7e101") version("1.2-0", sha256="ba3c684118c0eaab4601b21988c553ce7ee019df1714d2ac8d4451075f843b86") version("1.0-3", sha256="bfe2aec6aae8235264c1494eee42be494fed81a676c6de9e39c57a6e3682b37d") version("1.0-1", sha256="b7bf5d35ec4205115112481f6761de3e276e6b086a3e5249621ad63aa23a1ac8") @@ -40,11 +41,14 @@ class RPhytools(RPackage): depends_on("r@3.2.0:", type=("build", "run")) depends_on("r@3.5.0:", type=("build", "run"), when="@0.7-70:") depends_on("r-ape@4.0:", type=("build", "run")) + depends_on("r-ape@5.7:", type=("build", "run"), when="@1.5-1:") depends_on("r-maps", type=("build", "run")) depends_on("r-clustergeneration", type=("build", "run")) depends_on("r-coda", type=("build", "run")) depends_on("r-combinat", type=("build", "run")) + depends_on("r-doparallel", type=("build", "run"), when="@1.5-1:") depends_on("r-expm", type=("build", "run")) + depends_on("r-foreach", type=("build", "run"), when="@1.5-1:") depends_on("r-mass", type=("build", "run")) depends_on("r-mnormt", type=("build", "run")) depends_on("r-nlme", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-pillar/package.py b/var/spack/repos/builtin/packages/r-pillar/package.py index 56aed19a99..560599fc5b 100644 --- a/var/spack/repos/builtin/packages/r-pillar/package.py +++ b/var/spack/repos/builtin/packages/r-pillar/package.py @@ -14,6 +14,7 @@ class RPillar(RPackage): cran = "pillar" + version("1.9.0", sha256="f23eb486c087f864c2b4072d5cba01d5bebf2f554118bcba6886d8dbceb87acc") version("1.8.1", sha256="2f06a7cc9e5638390c9b98a6ec9a9ec1beec0f2b9dbdfa42e39a5ab2456d87ec") version("1.7.0", sha256="7841f89658cc8935568c0ff24dc480b4481bac896de2f6447050abc4360a13bb") version("1.6.5", sha256="22fbf1ba0677fbd15cb35729fe4e97fab751a4c1de3eb8a4694f86b2be411bdb") @@ -42,8 +43,8 @@ class RPillar(RPackage): depends_on("r-vctrs", type=("build", "run"), when="@1.4.0:") depends_on("r-vctrs@0.2.0:", type=("build", "run"), when="@1.4.7:") depends_on("r-vctrs@0.3.8:", type=("build", "run"), when="@1.6.1:") - depends_on("r-crayon@1.3.4:", type=("build", "run")) - depends_on("r-crayon", when="@:1.7.0") - depends_on("r-ellipsis", type=("build", "run"), when="@1.4.7:") - depends_on("r-ellipsis@0.3.2", type=("build", "run"), when="@1.6.1:") - depends_on("r-ellipsis", when="@:1.7.0") + depends_on("r-vctrs@0.5.0:", type=("build", "run"), when="@1.9.0:") + + depends_on("r-crayon@1.3.4:", type=("build", "run"), when="@:1.7.0") + depends_on("r-ellipsis", type=("build", "run"), when="@1.4.7:1.7.0") + depends_on("r-ellipsis@0.3.2", type=("build", "run"), when="@1.6.1:1.7.0") diff --git a/var/spack/repos/builtin/packages/r-pkgbuild/package.py b/var/spack/repos/builtin/packages/r-pkgbuild/package.py index 4c6daa7549..4aa54e040a 100644 --- a/var/spack/repos/builtin/packages/r-pkgbuild/package.py +++ b/var/spack/repos/builtin/packages/r-pkgbuild/package.py @@ -15,6 +15,7 @@ class RPkgbuild(RPackage): cran = "pkgbuild" + version("1.4.0", sha256="357f3c40c99650eaa8a715991ff1355a553acb165f217ed204712f698ba55ed6") version("1.3.1", sha256="7c6a82d1e6b19e136a7d16095743c50cd7b6340eeda594e4a8e14d74972ddb48") version("1.2.0", sha256="2e19308d3271fefd5e118c6d132d6a2511253b903620b5417892c72d2010a963") version("1.0.8", sha256="b149fcf3e98ef148945ff9f4272512cd03e21408c235ec6c0548167fd41219a1") @@ -22,12 +23,15 @@ class RPkgbuild(RPackage): version("1.0.3", sha256="c93aceb499886e42bcd61eb7fb59e47a76c9ba5ab5349a426736d46c8ce21f4d") depends_on("r@3.1:", type=("build", "run")) + depends_on("r@3.4:", type=("build", "run"), when="@1.4.0:") depends_on("r-callr@2.0.0:", type=("build", "run")) depends_on("r-callr@3.2.0:", type=("build", "run"), when="@1.0.4:") depends_on("r-cli", type=("build", "run")) + depends_on("r-cli@3.4.0:", type=("build", "run"), when="@1.4.0:") depends_on("r-crayon", type=("build", "run")) depends_on("r-desc", type=("build", "run")) depends_on("r-prettyunits", type=("build", "run")) + depends_on("r-processx", type=("build", "run"), when="@1.4.0:") depends_on("r-r6", type=("build", "run")) depends_on("r-rprojroot", type=("build", "run")) depends_on("r-withr@2.1.2:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-pkgcache/package.py b/var/spack/repos/builtin/packages/r-pkgcache/package.py index 0b1f10957c..3c51535d69 100644 --- a/var/spack/repos/builtin/packages/r-pkgcache/package.py +++ b/var/spack/repos/builtin/packages/r-pkgcache/package.py @@ -15,6 +15,7 @@ class RPkgcache(RPackage): cran = "pkgcache" + version("2.1.0", sha256="cfc03c2060028097972c32c3f2d922d7a598dfd963e5e5250d85a3dfa2f2e206") version("2.0.3", sha256="80deafd60f15dda029536d4ce13c37ef91c49cb6636323daadbf3d64a67da028") version("2.0.2", sha256="6860b5b7046ef349c2fdad4ba3aecb57c7516fba952a19e3ff7cccb7f859f881") version("2.0.1", sha256="1add648c6f30543cbd5e43369c4d1462248d4caaedfcb588ee7b946a75d42f4f") @@ -38,5 +39,4 @@ class RPkgcache(RPackage): depends_on("r-rlang", type=("build", "run"), when="@:1.3.0") depends_on("r-tibble", type=("build", "run"), when="@:1.3.0") depends_on("r-uuid", type=("build", "run"), when="@:1.3.0") - depends_on("r-glue", type=("build", "run")) - depends_on("r-glue", when="@:2.0.2") + depends_on("r-glue", type=("build", "run"), when="@:2.0.2") diff --git a/var/spack/repos/builtin/packages/r-pkgdepends/package.py b/var/spack/repos/builtin/packages/r-pkgdepends/package.py index b9e493bb52..ca11fd640c 100644 --- a/var/spack/repos/builtin/packages/r-pkgdepends/package.py +++ b/var/spack/repos/builtin/packages/r-pkgdepends/package.py @@ -20,6 +20,7 @@ class RPkgdepends(RPackage): cran = "pkgdepends" + version("0.5.0", sha256="eadc98e335f9d2cc10b31cf7a5b55fe3308266fbd6f46d5dbd37b5d90bfcf1bc") version("0.3.2", sha256="61db529965f973847b4d1337c6556527a89953cad09d231a6e6ca2145a426a21") version("0.3.1", sha256="8e4263a1792871ee9629b0d6a8caeb53b77012db3b5be91b432f3553cd2a80be") version("0.2.0", sha256="59afdbe0e59663088ba4facac5cd011a0a05b0b9c540103fb8b9f0a673bf4d94") @@ -27,7 +28,7 @@ class RPkgdepends(RPackage): depends_on("r@3.4:", type=("build", "run"), when="@0.3.1:") depends_on("r-callr@3.3.1:", type=("build", "run")) depends_on("r-cli@2.1.0:", type=("build", "run")) - depends_on("r-crayon", type=("build", "run")) + depends_on("r-cli@3.6.0:", type=("build", "run"), when="@0.5.0:") depends_on("r-curl", type=("build", "run")) depends_on("r-desc@1.2.0:", type=("build", "run")) depends_on("r-filelock@1.0.2:", type=("build", "run")) @@ -37,6 +38,7 @@ class RPkgdepends(RPackage): depends_on("r-pkgbuild@1.0.2:", type=("build", "run")) depends_on("r-pkgcache@1.3.0:", type=("build", "run")) depends_on("r-pkgcache@2.0.0:", type=("build", "run"), when="@0.3.1:") + depends_on("r-pkgcache@2.1.0:", type=("build", "run"), when="@0.5.0:") depends_on("r-prettyunits@1.1.1:", type=("build", "run")) depends_on("r-processx@3.4.2:", type=("build", "run")) depends_on("r-ps", type=("build", "run")) @@ -44,6 +46,8 @@ class RPkgdepends(RPackage): depends_on("r-rprojroot", type=("build", "run")) depends_on("r-withr@2.1.1:", type=("build", "run")) depends_on("r-zip@2.1.0:", type=("build", "run")) + depends_on("r-zip@2.3.0:", type=("build", "run"), when="@0.5.0:") depends_on("r-rematch2", type=("build", "run"), when="@:0.2.0") depends_on("r-tibble", type=("build", "run"), when="@:0.2.0") + depends_on("r-crayon", type=("build", "run"), when="@:0.3.2") diff --git a/var/spack/repos/builtin/packages/r-pkgdown/package.py b/var/spack/repos/builtin/packages/r-pkgdown/package.py index aa4885b1d5..71cfcbc3d1 100644 --- a/var/spack/repos/builtin/packages/r-pkgdown/package.py +++ b/var/spack/repos/builtin/packages/r-pkgdown/package.py @@ -15,11 +15,13 @@ class RPkgdown(RPackage): cran = "pkgdown" + version("2.0.7", sha256="f33872869dfa8319182d87e90eab3245ff69293b3b791471bf9538afb81b356a") version("2.0.6", sha256="d29a65c8a5b189fd89842e769f58f8c2369a55406269eabfb66d41d0fe1c7f69") depends_on("r@3.1.0:", type=("build", "run")) depends_on("r-bslib@0.3.1:", type=("build", "run")) depends_on("r-callr@2.0.2:", type=("build", "run")) + depends_on("r-callr@3.7.3:", type=("build", "run"), when="@2.0.7:") depends_on("r-cli", type=("build", "run")) depends_on("r-desc", type=("build", "run")) depends_on("r-digest", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-pkgload/package.py b/var/spack/repos/builtin/packages/r-pkgload/package.py index b442c06727..cc787a3b45 100644 --- a/var/spack/repos/builtin/packages/r-pkgload/package.py +++ b/var/spack/repos/builtin/packages/r-pkgload/package.py @@ -15,6 +15,7 @@ class RPkgload(RPackage): cran = "pkgload" + version("1.3.2", sha256="35d19a032bfeeefcab92d76a768b4a420c2ede0920badaf48cca878592b46b2f") version("1.3.1", sha256="c6b8b70d7b7e194e7d44a42364f0362e971d9ab9c5794c4ae5ed4f9e61b1679a") version("1.3.0", sha256="5af653c901662260cc221971cc968355428cc6183b61c15be80aa9545f9f4228") version("1.2.4", sha256="d6912bc824a59ccc9b2895c3cf3b08a3ff310a333888bb8e90d1a6ce754dd90f") @@ -36,6 +37,4 @@ class RPkgload(RPackage): depends_on("r-withr@2.4.3:", type=("build", "run"), when="@1.3.0:") depends_on("r-pkgbuild", type=("build", "run"), when="@:1.1.0") - depends_on("r-rstudioapi", type=("build", "run")) - depends_on("r-rstudioapi", when="@:1.2.4") - depends_on("r-rstudioapi", when="@:1.3.0") + depends_on("r-rstudioapi", type=("build", "run"), when="@:1.2.4") diff --git a/var/spack/repos/builtin/packages/r-png/package.py b/var/spack/repos/builtin/packages/r-png/package.py index e86acfd1ec..97ead7b24b 100644 --- a/var/spack/repos/builtin/packages/r-png/package.py +++ b/var/spack/repos/builtin/packages/r-png/package.py @@ -15,6 +15,7 @@ class RPng(RPackage): cran = "png" + version("0.1-8", sha256="5a36fabb6d62ba2533d3fc4cececd07891942cfb76fe689ec0d550d08762f61c") version("0.1-7", sha256="e269ff968f04384fc9421d17cfc7c10cf7756b11c2d6d126e9776f5aca65553c") depends_on("r@2.9.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-polspline/package.py b/var/spack/repos/builtin/packages/r-polspline/package.py index f9049f4964..15fb19d20d 100644 --- a/var/spack/repos/builtin/packages/r-polspline/package.py +++ b/var/spack/repos/builtin/packages/r-polspline/package.py @@ -15,6 +15,7 @@ class RPolspline(RPackage): cran = "polspline" + version("1.1.22", sha256="b2f2198f020d7d492a87bad2b58a6cc9ae91d95b7330dd12b9b1145c72d7457b") version("1.1.20", sha256="6992484e9e41036debef1e705e26959f8f5c7a68d3e1fda58273d2a72297a1b5") version("1.1.19", sha256="953e3c4d007c3ef86ac2af3c71b272a99e8e35b194bdd58575785558c6711f66") version("1.1.18", sha256="df250ee144bfff154249ba50308f46863107ef3efb2333ad908e599ed0eb0102") diff --git a/var/spack/repos/builtin/packages/r-pool/package.py b/var/spack/repos/builtin/packages/r-pool/package.py index e12f23644c..53314bd16b 100644 --- a/var/spack/repos/builtin/packages/r-pool/package.py +++ b/var/spack/repos/builtin/packages/r-pool/package.py @@ -15,9 +15,12 @@ class RPool(RPackage): cran = "pool" + version("1.0.1", sha256="73d5dffd55e80fdadb88401f12570fcf08e932c4c86761931241f9841fddadbf") version("0.1.6", sha256="cdbe5f6c7f757c01893dc9870df0fb8d300829da0e427f6c2559b01caa52d9e1") depends_on("r@3.0.0:", type=("build", "run")) depends_on("r-dbi", type=("build", "run")) depends_on("r-r6", type=("build", "run")) + depends_on("r-withr", type=("build", "run"), when="@1.0.1:") + depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@1.0.1:") depends_on("r-later@1.0.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-posterior/package.py b/var/spack/repos/builtin/packages/r-posterior/package.py index 81a8d0db16..02c82b5804 100644 --- a/var/spack/repos/builtin/packages/r-posterior/package.py +++ b/var/spack/repos/builtin/packages/r-posterior/package.py @@ -21,6 +21,7 @@ class RPosterior(RPackage): cran = "posterior" + version("1.4.1", sha256="2b8953fa8d6890a105521023c431ddea725465eb95cf9454a88852e43ebb58d3") version("1.3.1", sha256="7000780290a24be86dbc406dd4338aec622d8dee1e471b68b55abb4872934d7a") version("1.2.1", sha256="b757e06885a1f21e7ad8f5a3feaecbe0a71ae8d766e4aec4c3aa2183a810afe1") version("1.2.0", sha256="2ba01711a98448acc939cf506d22e8ee4cf680cdcea873226671fa8ae6934386") @@ -30,8 +31,11 @@ class RPosterior(RPackage): depends_on("r-abind", type=("build", "run")) depends_on("r-checkmate", type=("build", "run")) depends_on("r-rlang@0.4.7:", type=("build", "run")) + depends_on("r-rlang@1.0.6:", type=("build", "run"), when="@1.4.1:") depends_on("r-tibble@3.0.0:", type=("build", "run")) + depends_on("r-tibble@3.1.0:", type=("build", "run"), when="@1.4.1:") depends_on("r-vctrs", type=("build", "run")) + depends_on("r-vctrs@0.5.0:", type=("build", "run"), when="@1.4.1:") depends_on("r-tensora", type=("build", "run")) depends_on("r-pillar", type=("build", "run")) depends_on("r-distributional", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-processx/package.py b/var/spack/repos/builtin/packages/r-processx/package.py index 45b6273b3a..01771aa7fd 100644 --- a/var/spack/repos/builtin/packages/r-processx/package.py +++ b/var/spack/repos/builtin/packages/r-processx/package.py @@ -18,6 +18,7 @@ class RProcessx(RPackage): cran = "processx" + version("3.8.1", sha256="e008472b81d4ca1a37a4ba7dd58e5e944f96ab2e44c8ccc8840d43e9fe99e93c") version("3.8.0", sha256="9270d9d26c4314151062801a5c1fc57556b4fcb41dbf3558cb5bd230b18ffb0b") version("3.7.0", sha256="de6a8d4135fc53ec35043fbaf6b000dc9597719345595d8479662a39dad55ed3") version("3.5.3", sha256="679629fa56ec185d4fd52ade5b699c78a2a0e875acdf57555b31bc62111f342a") diff --git a/var/spack/repos/builtin/packages/r-prodlim/package.py b/var/spack/repos/builtin/packages/r-prodlim/package.py index a9ca21e2b0..497ffc911f 100644 --- a/var/spack/repos/builtin/packages/r-prodlim/package.py +++ b/var/spack/repos/builtin/packages/r-prodlim/package.py @@ -16,6 +16,9 @@ class RProdlim(RPackage): cran = "prodlim" version( + "2023.03.31", sha256="5510454f8511ca956666f27dfb77d875c56b9166188c33f22cd22b7615797800" + ) + version( "2019.11.13", sha256="6809924f503a14681de84730489cdaf9240d7951c64f5b98ca37dc1ce7809b0f" ) version( @@ -26,6 +29,8 @@ class RProdlim(RPackage): depends_on("r@2.9.0:", type=("build", "run")) depends_on("r-rcpp@0.11.5:", type=("build", "run")) + depends_on("r-diagram", type=("build", "run"), when="@2023.03.31:") + depends_on("r-data-table", type=("build", "run"), when="@2023.03.31:") depends_on("r-survival", type=("build", "run")) depends_on("r-kernsmooth", type=("build", "run")) depends_on("r-lava", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-proj4/package.py b/var/spack/repos/builtin/packages/r-proj4/package.py index 5aed2706db..1dff0eef61 100644 --- a/var/spack/repos/builtin/packages/r-proj4/package.py +++ b/var/spack/repos/builtin/packages/r-proj4/package.py @@ -15,6 +15,7 @@ class RProj4(RPackage): cran = "proj4" + version("1.0-12", sha256="4aeb8a54d5b459674093c76068b92dbd3ce99a4e5db8829fbae868c2e43776f8") version("1.0-11", sha256="c5f186530267005d53cc2e86849613b254ca4515a8b10310146f712d45a1d11d") version("1.0-10.1", sha256="66857cbe5cba4930b18621070f9a7263ea0d8ddc3e5a035a051a1496e4e1da19") version("1.0-10", sha256="5f396f172a17cfa9821a390f11ff7d3bff3c92ccf585572116dec459c621d1d0") diff --git a/var/spack/repos/builtin/packages/r-projpred/package.py b/var/spack/repos/builtin/packages/r-projpred/package.py index 0499f14566..6b003660f3 100644 --- a/var/spack/repos/builtin/packages/r-projpred/package.py +++ b/var/spack/repos/builtin/packages/r-projpred/package.py @@ -19,25 +19,32 @@ class RProjpred(RPackage): cran = "projpred" + version("2.5.0", sha256="b6ec123f5bf573d14cbd5431e3fbdee3215d71d3e263fcbec72bee5930044e39") version("2.2.1", sha256="6825ace07d1e580d5916bcd6bfd163460ae9008926f464e00deb7f2395cc72ad") version("2.1.2", sha256="a88a651e533c118aad0e8c2c905cfcf688d9c419ed195896036b8f6667b5cfb0") version("2.0.2", sha256="af0a9fb53f706090fe81b6381b27b0b6bd3f7ae1e1e44b0ada6f40972b09a55b") depends_on("r@3.5.0:", type=("build", "run")) - depends_on("r-dplyr", type=("build", "run")) depends_on("r-loo@2.0.0:", type=("build", "run")) depends_on("r-rstantools@2.0.0:", type=("build", "run")) depends_on("r-lme4", type=("build", "run")) + depends_on("r-lme4@1.1-28:", type=("build", "run"), when="@2.5.0:") depends_on("r-mvtnorm", type=("build", "run"), when="@2.1.2:") depends_on("r-ggplot2", type=("build", "run")) depends_on("r-rcpp", type=("build", "run")) - depends_on("r-magrittr", type=("build", "run")) + depends_on("r-abind", type=("build", "run"), when="@2.5.0:") depends_on("r-mgcv", type=("build", "run")) depends_on("r-gamm4", type=("build", "run")) - depends_on("r-rlang", type=("build", "run"), when="@2.1.2:") + depends_on("r-mclogit", type=("build", "run"), when="@2.5.0:") + depends_on("r-nnet", type=("build", "run"), when="@2.5.0:") + depends_on("r-ucminf", type=("build", "run"), when="@2.5.0:") + depends_on("r-ordinal", type=("build", "run"), when="@2.5.0:") + depends_on("r-mass", type=("build", "run")) depends_on("r-rcpparmadillo", type=("build", "run")) depends_on("r-optimx", type=("build", "run"), when="@:2.0.2") depends_on("r-rngtools@1.2.4:", type=("build", "run"), when="@:2.0.2") depends_on("r-tidyverse", type=("build", "run"), when="@:2.0.2") - depends_on("r-mass", type=("build", "run"), when="@:2.0.2") + depends_on("r-dplyr", type=("build", "run"), when="@:2.2.1") + depends_on("r-magrittr", type=("build", "run"), when="@:2.2.1") + depends_on("r-rlang", type=("build", "run"), when="@2.1.2:2.2.1") diff --git a/var/spack/repos/builtin/packages/r-pryr/package.py b/var/spack/repos/builtin/packages/r-pryr/package.py index 5cc9480c56..97b66d3d15 100644 --- a/var/spack/repos/builtin/packages/r-pryr/package.py +++ b/var/spack/repos/builtin/packages/r-pryr/package.py @@ -15,6 +15,7 @@ class RPryr(RPackage): cran = "pryr" + version("0.1.6", sha256="68c1a30a42808eb01a64d31e521d21f2fd5a88dd2c14d05b4b7986d27a177704") version("0.1.5", sha256="7b1653ec51850f4633cee8e2eb7d0b2724fb587b801539488b426cf88f0f770b") version("0.1.4", sha256="d39834316504c49ecd4936cbbcaf3ee3dae6ded287af42475bf38c9e682f721b") version("0.1.3", sha256="6acd88341dde4fe247a5cafd3949b281dc6742b7d60f68b57c1feb84b96739ac") diff --git a/var/spack/repos/builtin/packages/r-ps/package.py b/var/spack/repos/builtin/packages/r-ps/package.py index 4395fa8d1c..fd5c29cfe2 100644 --- a/var/spack/repos/builtin/packages/r-ps/package.py +++ b/var/spack/repos/builtin/packages/r-ps/package.py @@ -14,6 +14,7 @@ class RPs(RPackage): cran = "ps" + version("1.7.5", sha256="1abc3ae3c55797b994973f7e43bf5c7bbb4da649a0dcfad36675e196dba4cb4e") version("1.7.2", sha256="9225ebdedb5c1b245bb38b01ce88084c0fc7eafcff6c4fda2e299003ace6b21a") version("1.7.1", sha256="9c458a377d47cc972d3cd0b2a17d0b7ad3cf3b62226410803072089a57a55ef1") version("1.7.0", sha256="8220cf32c6a12c908b6b7669f96b57445d3147a1aa484b9b5209e0f3fd4b52e1") diff --git a/var/spack/repos/builtin/packages/r-purrr/package.py b/var/spack/repos/builtin/packages/r-purrr/package.py index 2aab73f127..a653ca347b 100644 --- a/var/spack/repos/builtin/packages/r-purrr/package.py +++ b/var/spack/repos/builtin/packages/r-purrr/package.py @@ -13,6 +13,7 @@ class RPurrr(RPackage): cran = "purrr" + version("1.0.1", sha256="0a7911be3539355a4c40d136f2602befcaaad5a3f7222078500bfb969a6f2ba2") version("0.3.5", sha256="a2386cd7e78a043cb9c14703023fff15ab1c879bf648816879d2c0c4a554fcef") version("0.3.4", sha256="23ebc93bc9aed9e7575e8eb9683ff4acc0270ef7d6436cc2ef4236a9734840b2") version("0.3.2", sha256="27c74dd9e4f6f14bf442473df22bcafc068822f7f138f0870326532f143a9a31") @@ -21,7 +22,13 @@ class RPurrr(RPackage): depends_on("r@3.1:", type=("build", "run")) depends_on("r@3.2:", type=("build", "run"), when="@0.3.3:") + depends_on("r@3.4.0:", type=("build", "run"), when="@1.0.1:") + depends_on("r-vctrs@0.5.0:", type=("build", "run"), when="@1.0.1:") + depends_on("r-lifecycle@1.0.3:", type=("build", "run"), when="@1.0.1:") + depends_on("r-cli@3.4.0:", type=("build", "run"), when="@1.0.1:") depends_on("r-magrittr@1.5:", type=("build", "run")) + depends_on("r-magrittr@1.5.0:", type=("build", "run"), when="@1.0.1:") depends_on("r-rlang@0.3.1:", type=("build", "run")) + depends_on("r-rlang@0.4.10:", type=("build", "run"), when="@1.0.1:") depends_on("r-tibble", type=("build", "run"), when="@:0.2.9") diff --git a/var/spack/repos/builtin/packages/r-qqconf/package.py b/var/spack/repos/builtin/packages/r-qqconf/package.py index b8042cc388..a4a5af737f 100644 --- a/var/spack/repos/builtin/packages/r-qqconf/package.py +++ b/var/spack/repos/builtin/packages/r-qqconf/package.py @@ -15,6 +15,7 @@ class RQqconf(RPackage): cran = "qqconf" + version("1.3.2", sha256="9405d627adf9447a003e14dac43701ea3e03ee73244038aa4a6e3dd324dd8ea3") version("1.3.0", sha256="1c42ab81403568f3ad53217cc85190dad7c2fae957bfd0f0f30d57be0a065087") version("1.2.3", sha256="9b5b6042ea8e52e6e049807c0b5e3bfd534b624bd257be769de69cf505fece62") @@ -24,9 +25,7 @@ class RQqconf(RPackage): depends_on("r-robustbase@0.93-4:", type=("build", "run")) depends_on("r-rcpp", type=("build", "run")) depends_on("fftw@3.1.2:") - depends_on("r-dplyr@1.0.0:", type=("build", "run")) - depends_on("r-dplyr", when="@:1.2.3") - depends_on("r-magrittr@1.5:", type=("build", "run")) - depends_on("r-magrittr", when="@:1.2.3") - depends_on("r-rlang@0.4.9:", type=("build", "run")) - depends_on("r-rlang", when="@:1.2.3") + + depends_on("r-dplyr@1.0.0:", type=("build", "run"), when="@:1.2.3") + depends_on("r-magrittr@1.5:", type=("build", "run"), when="@:1.2.3") + depends_on("r-rlang@0.4.9:", type=("build", "run"), when="@:1.2.3") diff --git a/var/spack/repos/builtin/packages/r-qs/package.py b/var/spack/repos/builtin/packages/r-qs/package.py index cecc9c0bee..0eac668199 100644 --- a/var/spack/repos/builtin/packages/r-qs/package.py +++ b/var/spack/repos/builtin/packages/r-qs/package.py @@ -16,6 +16,7 @@ class RQs(RPackage): maintainers("dorton21") + version("0.25.5", sha256="3f87388708a0fdfb0e68caade75ed771fd395cb4f649973459bc97f41d42064c") version("0.25.4", sha256="92c49206a9c1c66dbd95f12efc3a57acb728e1f8387b549c437519fb2b98a533") version("0.25.3", sha256="51adf6a112c19f78ceeefa55acf800c7e6bf2664e7d9cea9d932abb24f22be6b") version("0.25.2", sha256="fe428ae5dc46f88fdf454ca74c4a073f5ac288d6d039080a3c0d66c4ebbd5cbf") @@ -28,3 +29,4 @@ class RQs(RPackage): depends_on("r-rapiserialize@0.1.1:", type=("build", "run"), when="@0.25.4:") depends_on("r-stringfish@0.14.1:", type=("build", "run")) depends_on("r-stringfish@0.15.1:", type=("build", "run"), when="@0.25.2:") + depends_on("zstd") diff --git a/var/spack/repos/builtin/packages/r-qtl/package.py b/var/spack/repos/builtin/packages/r-qtl/package.py index d885daf8c4..754f8887e4 100644 --- a/var/spack/repos/builtin/packages/r-qtl/package.py +++ b/var/spack/repos/builtin/packages/r-qtl/package.py @@ -15,6 +15,7 @@ class RQtl(RPackage): cran = "qtl" + version("1.60", sha256="8e9e5dfe2c6a76d4f69fb27add93ed0859ed3eaa23347310c2b9e3f07359d8ad") version("1.58", sha256="6eca5ac177ae62304d63c224f161b0f3ac9327ec1a03da5d7df2d5ddf4b09d97") version("1.52", sha256="320ac6172f2911ee772472becd68ff49a357c99fe7454335e4a19090d5788960") version("1.50", sha256="2d38656f04dc4187aefe56c29a8f915b8c7e222d76b84afe7045d272294f9ed5") diff --git a/var/spack/repos/builtin/packages/r-quantmod/package.py b/var/spack/repos/builtin/packages/r-quantmod/package.py index 537166e0ec..385125f690 100644 --- a/var/spack/repos/builtin/packages/r-quantmod/package.py +++ b/var/spack/repos/builtin/packages/r-quantmod/package.py @@ -14,6 +14,7 @@ class RQuantmod(RPackage): cran = "quantmod" + version("0.4.22", sha256="f29496f1ca9a9faf91aba70ac50bfe79303197ca8f1e369c96300005b5e6765e") version("0.4.20", sha256="f757df41595d885f7927e18f4835bc233d78d2d3ae48fd11c8874d4338c48e94") version("0.4.18", sha256="aa40448e93a1facf399213ac691784007731e869ad243fe762381ab099cd6c35") version("0.4-15", sha256="7ef2e798d4d8e4d2af0a5b2b9fecebec30568087afbd24bfd923cdeb8b53df53") @@ -26,3 +27,4 @@ class RQuantmod(RPackage): depends_on("r-zoo", type=("build", "run")) depends_on("r-ttr@0.2:", type=("build", "run")) depends_on("r-curl", type=("build", "run")) + depends_on("r-jsonlite@1.1:", type=("build", "run"), when="@0.4.22:") diff --git a/var/spack/repos/builtin/packages/r-quantreg/package.py b/var/spack/repos/builtin/packages/r-quantreg/package.py index b001773efe..7a17e47142 100644 --- a/var/spack/repos/builtin/packages/r-quantreg/package.py +++ b/var/spack/repos/builtin/packages/r-quantreg/package.py @@ -19,6 +19,7 @@ class RQuantreg(RPackage): cran = "quantreg" + version("5.95", sha256="4b05a81eceebbd927372cefdc4912dfa70b6dfcd96528489f78e125eb32a96cc") version("5.94", sha256="52d585ccb972ed7726b7d083f5635d3e42915847398e00fd6e0f69a5fe1b17c1") version("5.93", sha256="d4a94984a500bf4c92dec21013441f001a4aa0541c4c651384e257a4b4e9e539") version("5.88", sha256="1940e553711ed50655b2692ba29432d1083ed83c2db06e31a031ce8f82823a3f") diff --git a/var/spack/repos/builtin/packages/r-questionr/package.py b/var/spack/repos/builtin/packages/r-questionr/package.py index 4b10e4d09d..6c2c35226c 100644 --- a/var/spack/repos/builtin/packages/r-questionr/package.py +++ b/var/spack/repos/builtin/packages/r-questionr/package.py @@ -15,6 +15,7 @@ class RQuestionr(RPackage): cran = "questionr" + version("0.7.8", sha256="af72e59fe652c6063282a7e5b0f487993b9361cc9ed052a632d64a5a6db76ba9") version("0.7.7", sha256="ce24c40bd98dbeca615b9eb2a9cd2da26852821dc3840f8394eeecb0739dfd56") version("0.7.6", sha256="4b71d049d9e032157e12a7809dbfa2a39262b49d0c7a03ed434791a66f0cee5e") version("0.7.4", sha256="818ad87723aa7ebe466b3a639c9e86b7f77e6a341c8d9a933073925a21d4555c") @@ -27,5 +28,6 @@ class RQuestionr(RPackage): depends_on("r-styler", type=("build", "run")) depends_on("r-classint", type=("build", "run")) depends_on("r-htmltools", type=("build", "run")) + depends_on("r-rlang", type=("build", "run"), when="@0.7.8:") depends_on("r-labelled@2.6.0:", type=("build", "run")) depends_on("xclip", when="platform=linux") diff --git a/var/spack/repos/builtin/packages/r-ragg/package.py b/var/spack/repos/builtin/packages/r-ragg/package.py index b104ff919a..634bca5a1b 100644 --- a/var/spack/repos/builtin/packages/r-ragg/package.py +++ b/var/spack/repos/builtin/packages/r-ragg/package.py @@ -16,6 +16,7 @@ class RRagg(RPackage): cran = "ragg" + version("1.2.5", sha256="936f4d75e0e01cdeefb9f57d121cdd7812d0de5a9e1a3a8315f92ce1c84da8f9") version("1.2.4", sha256="c547e5636a2eefaa0021a0d50fad1e813c2ce976ec0c9c3f796d38a110680dcd") version("1.2.3", sha256="976da0007ef0d4dbadda4734727b539671b65c1eff4ff392d734f4e2c846f2b2") diff --git a/var/spack/repos/builtin/packages/r-ranger/package.py b/var/spack/repos/builtin/packages/r-ranger/package.py index 43322f970f..77bf3834a3 100644 --- a/var/spack/repos/builtin/packages/r-ranger/package.py +++ b/var/spack/repos/builtin/packages/r-ranger/package.py @@ -18,6 +18,7 @@ class RRanger(RPackage): cran = "ranger" + version("0.15.1", sha256="4d65d9ee7c5f2704a0e303a27222c02aa53e49f3c28dc0b4451371e37ada2b2e") version("0.14.1", sha256="5d99401d555da1cfb11c70e59d1bb545ce48720073a06a2a32eb396f622dee1b") version("0.13.1", sha256="60934f0accc21edeefddbb4ddebfdd7cd10a3d3e90b31aa2e6e4b7f50d632d0a") version("0.12.1", sha256="fc308e0ac06718272799928e1a19612de16b05bde481d8f38e11a101df5425ef") diff --git a/var/spack/repos/builtin/packages/r-raster/package.py b/var/spack/repos/builtin/packages/r-raster/package.py index 00d433b715..ff3b22d045 100644 --- a/var/spack/repos/builtin/packages/r-raster/package.py +++ b/var/spack/repos/builtin/packages/r-raster/package.py @@ -16,6 +16,7 @@ class RRaster(RPackage): cran = "raster" + version("3.6-20", sha256="7e5be49f4e37a2c14a3b87661b252956643b959146cbdb08e983660c1d59a813") version("3.6-3", sha256="9f06e0f7c36258790a97421b3a26d98c9b6a2cb702f941e58ab0b18f21b0c3c6") version("3.5-15", sha256="29c7d3c5d34284f8b5a2ddc9989fbcf092ce209d5eb5310ebc772b5ebdfdd685") version("3.5-11", sha256="e6c4823925260c65fe98585d7a0d47778616ae2e4eb1a1782b219580a9db61a3") @@ -33,3 +34,4 @@ class RRaster(RPackage): depends_on("r-terra@1.4-11:", type=("build", "run"), when="@3.5-11:") depends_on("r-terra@1.5-12:", type=("build", "run"), when="@3.5-15:") depends_on("r-terra@1.6-16:", type=("build", "run"), when="@3.6-3:") + depends_on("r-terra@1.6-41:", type=("build", "run"), when="@3.6-20:") diff --git a/var/spack/repos/builtin/packages/r-rbibutils/package.py b/var/spack/repos/builtin/packages/r-rbibutils/package.py index 7d60a48c9f..90a0579f9a 100644 --- a/var/spack/repos/builtin/packages/r-rbibutils/package.py +++ b/var/spack/repos/builtin/packages/r-rbibutils/package.py @@ -16,6 +16,7 @@ class RRbibutils(RPackage): cran = "rbibutils" + version("2.2.13", sha256="ac235c60bf191ad1830b93045af1b2fe50a6978f6f63cecc4c514a8ba339efc2") version("2.2.9", sha256="b22c07ff916ec338e5a8c6e7e4302f06c9b88d64ee6a59ee4bf5d83a3d5eff86") version("2.2.8", sha256="f1aecdeeba99042d34de19234238c5bbdc18a26f271f6adf9c9b7e349d50d152") version("2.2.7", sha256="7c9e6719556b8caa9fb58743b717e89f45e8e7018371bf16f07dc3c1f96a55c5") diff --git a/var/spack/repos/builtin/packages/r-rcpp/package.py b/var/spack/repos/builtin/packages/r-rcpp/package.py index 40f82ff428..e5eb5c550e 100644 --- a/var/spack/repos/builtin/packages/r-rcpp/package.py +++ b/var/spack/repos/builtin/packages/r-rcpp/package.py @@ -23,6 +23,7 @@ class RRcpp(RPackage): cran = "Rcpp" + version("1.0.10", sha256="1e65e24a9981251ab5fc4f9fd65fe4eab4ba0255be3400a8c5abe20b62b5d546") version("1.0.9", sha256="807cec06dc4a96d54904360f6144466f084a7ed411ce5d2eea486a9b3c229176") version("1.0.8.3", sha256="9da5b84cdaf56e972b41e669d496b1ece2e91bcd435505c68b9f2bd98375f8bf") version("1.0.8", sha256="879f9296bc045ac4ed464578723bd37fcabbbdaa30aaaf070cf953e329f678ee") diff --git a/var/spack/repos/builtin/packages/r-rcpparmadillo/package.py b/var/spack/repos/builtin/packages/r-rcpparmadillo/package.py index 1baf89d86f..97731c9e69 100644 --- a/var/spack/repos/builtin/packages/r-rcpparmadillo/package.py +++ b/var/spack/repos/builtin/packages/r-rcpparmadillo/package.py @@ -24,6 +24,9 @@ class RRcpparmadillo(RPackage): cran = "RcppArmadillo" version( + "0.12.2.0.0", sha256="8f9ce8413f12582fa5f04e33d7ba85dae7bd22c4567e87e146fffa349e2d78b7" + ) + version( "0.11.4.0.1", sha256="0ce4ddf5f3ca23e729437084240b352118cf2275525082239c2bd9cda86a37e3" ) version( diff --git a/var/spack/repos/builtin/packages/r-rcppcnpy/package.py b/var/spack/repos/builtin/packages/r-rcppcnpy/package.py index 2217a48d8e..56abc4f7dc 100644 --- a/var/spack/repos/builtin/packages/r-rcppcnpy/package.py +++ b/var/spack/repos/builtin/packages/r-rcppcnpy/package.py @@ -24,3 +24,4 @@ class RRcppcnpy(RPackage): depends_on("r@3.1.0:", type=("build", "run")) depends_on("r-rcpp", type=("build", "run")) + depends_on("zlib") diff --git a/var/spack/repos/builtin/packages/r-rcppde/package.py b/var/spack/repos/builtin/packages/r-rcppde/package.py index d9e9715f73..93ec581198 100644 --- a/var/spack/repos/builtin/packages/r-rcppde/package.py +++ b/var/spack/repos/builtin/packages/r-rcppde/package.py @@ -20,6 +20,7 @@ class RRcppde(RPackage): cran = "RcppDE" + version("0.1.7", sha256="4a238ee97e574cb44b12e4962b9927dd811f087fc13fc777637ec6fe12bd86a0") version("0.1.6", sha256="c9386709f72cdc33505b3ac675c173013fe098434b7c21bc09eb625b529132c5") depends_on("r-rcpp", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-rcppgsl/package.py b/var/spack/repos/builtin/packages/r-rcppgsl/package.py index 117624559f..f485d1c0f3 100644 --- a/var/spack/repos/builtin/packages/r-rcppgsl/package.py +++ b/var/spack/repos/builtin/packages/r-rcppgsl/package.py @@ -24,6 +24,7 @@ class RRcppgsl(RPackage): cran = "RcppGSL" + version("0.3.13", sha256="fe5e73bc119c6424e1a40b6fea17417a7bba93e81dbe9b7cf86dde9b8e8d93e7") version("0.3.12", sha256="9504effd4929101c20de2852c62180ae5e70bb2bbabcce2f5c7c02f641e3b9e2") version("0.3.11", sha256="f094ea26c99b04d9e203986a1f2003f02472ceca0e2ef1c3beefd3ae80aeada8") version("0.3.10", sha256="8612087da02fb791f427fed310c23d0482a8eb60fb089119f018878143f95451") diff --git a/var/spack/repos/builtin/packages/r-rcurl/package.py b/var/spack/repos/builtin/packages/r-rcurl/package.py index 180f855c0f..c9e2b20f6d 100644 --- a/var/spack/repos/builtin/packages/r-rcurl/package.py +++ b/var/spack/repos/builtin/packages/r-rcurl/package.py @@ -21,6 +21,7 @@ class RRcurl(RPackage): cran = "RCurl" + version("1.98-1.12", sha256="1a83fef04e9573b402171a6e4a4b27857a3d045eec8970f8f7233850bba626b2") version("1.98-1.9", sha256="f28d4871675ec3d2b45fb5d36f7647f546f81121510954c3ad24fdec1643cec5") version("1.98-1.6", sha256="6cb56864ac043195b658bbdb345518d561507d84ccd60362866e970c2f71d1a2") version("1.98-1.5", sha256="73187c9a039188ffdc255fb7fa53811a6abfb31e6375a51eae8c763b37dd698d") diff --git a/var/spack/repos/builtin/packages/r-rda/package.py b/var/spack/repos/builtin/packages/r-rda/package.py index 3673e278bf..1d083901ac 100644 --- a/var/spack/repos/builtin/packages/r-rda/package.py +++ b/var/spack/repos/builtin/packages/r-rda/package.py @@ -14,8 +14,7 @@ class RRda(RPackage): cran = "rda" - # Note: Package 'rda' was removed from the CRAN repository. - # The latest archived version is below + version("1.2-1", sha256="37038a9131c9133519f5e64fa1a86dbe28b21f519cf6528503234648a139ae9a") version("1.0.2-2.1", sha256="eea3a51a2e132a023146bfbc0c384f5373eb3ea2b61743d7658be86a5b04949e") version("1.0.2-2", sha256="52ee41249b860af81dc692eee38cd4f8f26d3fbe34cb274f4e118de0013b58bc") version("1.0.2-1", sha256="e5b96610ec9e82f12efe5dbb9a3ec9ecba9aaddfad1d6ab3f8c37d15fc2b42b7") diff --git a/var/spack/repos/builtin/packages/r-readr/package.py b/var/spack/repos/builtin/packages/r-readr/package.py index 18c750e275..95e17dd114 100644 --- a/var/spack/repos/builtin/packages/r-readr/package.py +++ b/var/spack/repos/builtin/packages/r-readr/package.py @@ -16,6 +16,7 @@ class RReadr(RPackage): cran = "readr" + version("2.1.4", sha256="98144fa48c4fa61ef8c73ede8f87a2d2c5c44e9502b7875b266eb79984fbeb0d") version("2.1.3", sha256="d70dd55e80e87cf1387811fcdc3da92987a892ee75dae02f77ff074142618263") version("2.1.2", sha256="94afd03a1fa4abcf2985ec903bbf5995d7c590e1a50512ed80d081ef4fe10c1b") version("2.1.1", sha256="03937918a547e3a1587295f5e5f8c7f6865a4d04047d2b20c8d0f0701f1cbc84") @@ -27,6 +28,7 @@ class RReadr(RPackage): depends_on("r@3.0.2:", type=("build", "run")) depends_on("r@3.1:", type=("build", "run"), when="@1.3.0:") depends_on("r@3.4:", type=("build", "run"), when="@2.1.3:") + depends_on("r@3.5:", type=("build", "run"), when="@2.1.4:") depends_on("r-cli", type=("build", "run"), when="@1.4.0:") depends_on("r-cli@3.0.0:", type=("build", "run"), when="@2.1.2:") depends_on("r-cli@3.2.0:", type=("build", "run"), when="@2.1.3:") diff --git a/var/spack/repos/builtin/packages/r-readxl/package.py b/var/spack/repos/builtin/packages/r-readxl/package.py index 17a82079dc..d3e8a60f51 100644 --- a/var/spack/repos/builtin/packages/r-readxl/package.py +++ b/var/spack/repos/builtin/packages/r-readxl/package.py @@ -16,6 +16,7 @@ class RReadxl(RPackage): cran = "readxl" + version("1.4.2", sha256="387304e2c5be0dca4861ec0232f0d92cc1882b660ca917f8f2a8a4ae858aba11") version("1.4.1", sha256="f6bebb7f940fb21baacd60345b7075c77eb1d026466c55e6a36148de680da1fa") version("1.4.0", sha256="ab9239c249f79b649f7665a612b3dbf4b774ab633115e6dee41091a8cb2491f7") version("1.3.1", sha256="24b441713e2f46a3e7c6813230ad6ea4d4ddf7e0816ad76614f33094fbaaaa96") @@ -24,6 +25,7 @@ class RReadxl(RPackage): version("1.0.0", sha256="fbd62f07fed7946363698a57be88f4ef3fa254ecf456ef292535849c787fc7ad") depends_on("r@3.4:", type=("build", "run"), when="@1.4.0:") + depends_on("r@3.5:", type=("build", "run"), when="@1.4.2:") depends_on("r-cellranger", type=("build", "run")) depends_on("r-tibble@1.3.1:", type=("build", "run")) depends_on("r-tibble@2.0.1:", type=("build", "run"), when="@1.4.0:") diff --git a/var/spack/repos/builtin/packages/r-recipes/package.py b/var/spack/repos/builtin/packages/r-recipes/package.py index 1a3f459f87..f1c477fcec 100644 --- a/var/spack/repos/builtin/packages/r-recipes/package.py +++ b/var/spack/repos/builtin/packages/r-recipes/package.py @@ -17,6 +17,7 @@ class RRecipes(RPackage): cran = "recipes" + version("1.0.6", sha256="105e97127cdd6aaeb9fb3348e51a9c46e21fb8bcb734cb3bbd6dbdf2b6b2fc8f") version("1.0.2", sha256="1a7b5a9a2946fa34599935b6d93101ec559d8a901d49cc691972c75df8d5670e") version("1.0.1", sha256="9e3ae212413409bf41ec7d1a311586e12c0ca79943cef436707d041c57125bc9") version("0.2.0", sha256="3d0073e3eb98ac089a94bf8430f3c50915ff1f495d8e967c37baa6a0f6cea0a4") @@ -27,7 +28,9 @@ class RRecipes(RPackage): depends_on("r@3.1:", type=("build", "run")) depends_on("r@3.4:", type=("build", "run"), when="@1.0.1:") depends_on("r-dplyr", type=("build", "run")) + depends_on("r-dplyr@1.1.0:", type=("build", "run"), when="@1.0.6:") depends_on("r-cli", type=("build", "run"), when="@1.0.1:") + depends_on("r-clock@0.6.1:", type=("build", "run"), when="@1.0.6:") depends_on("r-ellipsis", type=("build", "run"), when="@0.1.17:") depends_on("r-generics", type=("build", "run")) depends_on("r-generics@0.1.0:", type=("build", "run"), when="@0.1.15:") @@ -37,6 +40,7 @@ class RRecipes(RPackage): depends_on("r-gower", type=("build", "run")) depends_on("r-hardhat@0.1.6.9001:", type=("build", "run"), when="@0.2.0:") depends_on("r-hardhat@1.2.0:", type=("build", "run"), when="@1.0.1:") + depends_on("r-hardhat@1.3.0:", type=("build", "run"), when="@1.0.6:") depends_on("r-ipred", type=("build", "run")) depends_on("r-ipred@0.9-12:", type=("build", "run"), when="@0.1.17:") depends_on("r-lifecycle", type=("build", "run"), when="@0.1.15:") @@ -46,6 +50,7 @@ class RRecipes(RPackage): depends_on("r-magrittr", type=("build", "run")) depends_on("r-matrix", type=("build", "run")) depends_on("r-purrr@0.2.3:", type=("build", "run")) + depends_on("r-purrr@1.0.0:", type=("build", "run"), when="@1.0.6:") depends_on("r-rlang@0.4.0:", type=("build", "run")) depends_on("r-rlang@1.0.3:", type=("build", "run"), when="@1.0.1:") depends_on("r-tibble", type=("build", "run")) @@ -57,4 +62,5 @@ class RRecipes(RPackage): depends_on("r-tidyselect@1.2.0:", type=("build", "run"), when="@1.0.2:") depends_on("r-timedate", type=("build", "run")) depends_on("r-vctrs", type=("build", "run"), when="@0.1.17:") + depends_on("r-vctrs@0.5.0:", type=("build", "run"), when="@1.0.6:") depends_on("r-withr", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-repr/package.py b/var/spack/repos/builtin/packages/r-repr/package.py index 4340f5ddc8..f76b93759a 100644 --- a/var/spack/repos/builtin/packages/r-repr/package.py +++ b/var/spack/repos/builtin/packages/r-repr/package.py @@ -15,6 +15,7 @@ class RRepr(RPackage): cran = "repr" + version("1.1.6", sha256="3d2e6c9b363c1ec4811688deff7fb22093cadc9e0a333930382093d93c16673f") version("1.1.4", sha256="6f799ca83e0940618dd8c22e62ffdce5ec11ba3366c5306ae58b55b53c097040") version("1.1.0", sha256="743fe018f9e3e54067a970bc38b6b8c0c0498b43f88d179ac4a959c2013a5f96") version("1.0.1", sha256="ecde22c17fd800e1ff5c2b2962689119aa486fba40fbc6f2c50e8d4cc61bc44b") diff --git a/var/spack/repos/builtin/packages/r-reproducible/package.py b/var/spack/repos/builtin/packages/r-reproducible/package.py index a3f49bbde3..f4e06125a1 100644 --- a/var/spack/repos/builtin/packages/r-reproducible/package.py +++ b/var/spack/repos/builtin/packages/r-reproducible/package.py @@ -24,6 +24,7 @@ class RReproducible(RPackage): maintainers("dorton21") + version("1.2.16", sha256="ec504cdc1adf305cd008ce65eff226e3cb60b7a454b2c8b98a871c84458546ae") version("1.2.10", sha256="fcee3aeb9d38c561c95df8663614ff0ed91a871719730766171b4ed19c82f729") version("1.2.8", sha256="6f453016404f6a2a235cb4d951a29aa7394dc3bd0b9cfc338dc85fb3d5045dd5") version("1.2.4", sha256="0525deefa6a0713c3fe2da8bfc529f62d6352bebf2ef08866503b4853412f149") @@ -38,12 +39,12 @@ class RReproducible(RPackage): depends_on("r-glue", type=("build", "run")) depends_on("r-lobstr", type=("build", "run"), when="@1.2.10:") depends_on("r-magrittr", type=("build", "run")) - depends_on("r-require", type=("build", "run")) depends_on("r-raster", type=("build", "run")) depends_on("r-raster@3.5-15:", type=("build", "run"), when="@1.2.10:") depends_on("r-rsqlite", type=("build", "run")) depends_on("r-rlang", type=("build", "run")) depends_on("r-sp@1.4-2:", type=("build", "run")) depends_on("unrar", type=("build", "run")) - depends_on("r-gdalutilities", type=("build", "run"), when="@1.2.8:") - depends_on("r-gdalutilities", when="@:1.2.8") + + depends_on("r-gdalutilities", type=("build", "run"), when="@1.2.8") + depends_on("r-require", type=("build", "run"), when="@:1.2.10") diff --git a/var/spack/repos/builtin/packages/r-require/package.py b/var/spack/repos/builtin/packages/r-require/package.py index 1150bd1a91..c04866ab2a 100644 --- a/var/spack/repos/builtin/packages/r-require/package.py +++ b/var/spack/repos/builtin/packages/r-require/package.py @@ -20,6 +20,7 @@ class RRequire(RPackage): maintainers("dorton21") + version("0.3.0", sha256="de879999f71bd3009b58676673f26774119fa84d3d7fcc28d0b02f07d5c63968") version("0.1.4", sha256="1657dacff807ec8865892fce4d55cec9e31affafd90cb44ab59b704d29575a8c") version("0.1.2", sha256="c045c1cc69f6d6248306d88f6399699b9f86134a71b631e35b9101901593af1b") version("0.0.13", sha256="ad9cb167694abe70beadc972c2c25086f0ac8e7e5802bf9606c1868e01be2526") @@ -29,6 +30,4 @@ class RRequire(RPackage): depends_on("r@3.6:", type=("build", "run"), when="@0.0.13:") depends_on("r@4.0:", type=("build", "run"), when="@0.1.2:") depends_on("r-data-table@1.10.4:", type=("build", "run")) - depends_on("r-remotes", type=("build", "run")) - depends_on("r-remotes", when="@:0.0.13") - depends_on("r-remotes", when="@:0.1.2") + depends_on("r-remotes", type=("build", "run"), when="@:0.0.13") diff --git a/var/spack/repos/builtin/packages/r-reticulate/package.py b/var/spack/repos/builtin/packages/r-reticulate/package.py index 0a1e2445ee..dad07be86b 100644 --- a/var/spack/repos/builtin/packages/r-reticulate/package.py +++ b/var/spack/repos/builtin/packages/r-reticulate/package.py @@ -17,6 +17,7 @@ class RReticulate(RPackage): cran = "reticulate" + version("1.28", sha256="58a299ed18faaa3ff14936752fcc2b86e64ae18fc9f36befdfd492ccb251516f") version("1.26", sha256="3fd74823bde1b0e094db7c2bf6b40ee2501f8d724b4c35b53da95c3c588c74c5") version("1.25", sha256="2125af9e75939c3b7c0dc74f28f42606e816d63aa1143baf631c318ff5ff3a2c") version("1.24", sha256="b918c5204916601f757ad0fc629b2ae1eabab7cdf7f6aa2e219d26e506d916cc") diff --git a/var/spack/repos/builtin/packages/r-rfast/package.py b/var/spack/repos/builtin/packages/r-rfast/package.py index 9402cf524a..0f281d4f5a 100644 --- a/var/spack/repos/builtin/packages/r-rfast/package.py +++ b/var/spack/repos/builtin/packages/r-rfast/package.py @@ -21,6 +21,7 @@ class RRfast(RPackage): cran = "Rfast" + version("2.0.7", sha256="8f86159a4760a7124e1c91ae0b022c7e496f81590ea4e4af702bea44e8dedf8f") version("2.0.6", sha256="34694b5c67ce8fcbdc90aac2ac80a74d4b66515f383e6301aea7c020009ebe7f") version("2.0.4", sha256="959907e36e24620c07ec282b203b40214f4914f4928c07ee6491043c27af31d9") diff --git a/var/spack/repos/builtin/packages/r-rgdal/package.py b/var/spack/repos/builtin/packages/r-rgdal/package.py index a412155039..74386f0f9a 100644 --- a/var/spack/repos/builtin/packages/r-rgdal/package.py +++ b/var/spack/repos/builtin/packages/r-rgdal/package.py @@ -23,6 +23,7 @@ class RRgdal(RPackage): cran = "rgdal" + version("1.6-6", sha256="d742d7aadfc004771e61cac28a1faffeb4dbda981dea19115be11c541087399a") version("1.6-2", sha256="7eab4b0adaa788b985cd33da214799d562a943f5788631ebd1301dfc69ca033d") version("1.5-32", sha256="4583a4e187492eb936b59bc6bfeefea687b115bc3ae25172e0ed348b38f473ed") version("1.5-28", sha256="7f54432cfa8c0db463f68e8856c3ca0a90671dc841ac5203af049eb318e261a2") diff --git a/var/spack/repos/builtin/packages/r-rgeos/package.py b/var/spack/repos/builtin/packages/r-rgeos/package.py index 407f295059..88025ad7ee 100644 --- a/var/spack/repos/builtin/packages/r-rgeos/package.py +++ b/var/spack/repos/builtin/packages/r-rgeos/package.py @@ -30,6 +30,7 @@ class RRgeos(RPackage): cran = "rgeos" + version("0.6-2", sha256="2ee2bb8b0c20d7908ac55d4d1cf8292c624ab836e02599ce1871a249a59fe0af") version("0.5-9", sha256="ab90cbfe6a3680a9d2eed5e655064a075adc66788e304468969ab7cc2df0e3d4") version("0.5-5", sha256="4baa0dfe6ff76e87ddb67a030fc14fe963d28b518485a4d71058923b2606d420") version("0.5-1", sha256="8408973e7fe5648e39aa53f3d4bfe800638021a146a4e06f86496c0132e05488") diff --git a/var/spack/repos/builtin/packages/r-rgl/package.py b/var/spack/repos/builtin/packages/r-rgl/package.py index 5a4af7cf32..ed0bd9004a 100644 --- a/var/spack/repos/builtin/packages/r-rgl/package.py +++ b/var/spack/repos/builtin/packages/r-rgl/package.py @@ -18,6 +18,7 @@ class RRgl(RPackage): cran = "rgl" + version("1.1.3", sha256="4fa246c2ab06261ea81e09a7a489f34174b93359fe74a3db291f8d0eccd38aae") version("0.110.2", sha256="da1118c1990ae161a5787960fb22009601d2ee7d39ca9c97c31c70589bce346d") version("0.108.3.2", sha256="033af3aceade6c21d0a602958fff1c25c21febc7d0e867cf88860cfa25fc3c65") version("0.108.3", sha256="89f96eb462cacfcc796ad351d7dac0480a7eb9f80e9bd75e58c5a79f0ee8133b") @@ -32,6 +33,7 @@ class RRgl(RPackage): depends_on("r@3.2.0:", type=("build", "run")) depends_on("r@3.3.0:", type=("build", "run"), when="@0.108.3:") depends_on("r-htmlwidgets", type=("build", "run")) + depends_on("r-htmlwidgets@1.6.0:", type=("build", "run"), when="@1.1.3:") depends_on("r-htmltools", type=("build", "run")) depends_on("r-knitr", type=("build", "run")) depends_on("r-knitr@1.33:", type=("build", "run"), when="@0.108.3:") diff --git a/var/spack/repos/builtin/packages/r-rinside/package.py b/var/spack/repos/builtin/packages/r-rinside/package.py index bef09010fd..26a30593a8 100644 --- a/var/spack/repos/builtin/packages/r-rinside/package.py +++ b/var/spack/repos/builtin/packages/r-rinside/package.py @@ -26,6 +26,7 @@ class RRinside(RPackage): cran = "RInside" + version("0.2.18", sha256="805014f0f0a364633e0e3c59100665a089bc455dec80b24f04aaec96466cb736") version("0.2.17", sha256="0be28c44ee34cba669a7264d2b99c289230645598ca78e21682559dc31824348") version("0.2.16", sha256="7ae4ade128ea05f37068d59e610822ff0b277f9d39d8900f7eb31759ad5a2a0e") version("0.2.15", sha256="1e1d87a3584961f3aa4ca6acd4d2f3cda26abdab027ff5be2fd5cd76a98af02b") @@ -33,4 +34,3 @@ class RRinside(RPackage): version("0.2.13", sha256="be1da861f4f8c1292f0691bce05978e409a081f24ad6006ae173a6a89aa4d031") depends_on("r-rcpp", type=("build", "run")) - depends_on("r-rcpp@0.11.0:", type=("build", "run"), when="@:0.2.16") diff --git a/var/spack/repos/builtin/packages/r-rjags/package.py b/var/spack/repos/builtin/packages/r-rjags/package.py index 569356ff0a..9744c45be6 100644 --- a/var/spack/repos/builtin/packages/r-rjags/package.py +++ b/var/spack/repos/builtin/packages/r-rjags/package.py @@ -14,6 +14,7 @@ class RRjags(RPackage): cran = "rjags" + version("4-14", sha256="313b5df702598ce3bbc5f8b027b654c8489420ca5a4e0a794954ea9f4837e2cb") version("4-13", sha256="f85cc34c5127b828d8a3fa3613ef29f147c868bdaf55eb0f7406c10abbf92b32") version("4-12", sha256="b91f34c3f9ebf78fa44bd661346fbb6f28a01693a7203ac133c98392dd273e10") version("4-10", sha256="bd3e0bdf50b23b63061a0caa2428be585ccbf0b3f5d28eaa690e714e508d0ada") diff --git a/var/spack/repos/builtin/packages/r-rjsonio/package.py b/var/spack/repos/builtin/packages/r-rjsonio/package.py index ef24239d5c..2010423508 100644 --- a/var/spack/repos/builtin/packages/r-rjsonio/package.py +++ b/var/spack/repos/builtin/packages/r-rjsonio/package.py @@ -27,6 +27,7 @@ class RRjsonio(RPackage): cran = "RJSONIO" + version("1.3-1.8", sha256="f6f0576d3c7852b16295dfc897feebca064fe5dd29cdce7592f94c56823553f5") version("1.3-1.6", sha256="82d1c9ea7758b2a64ad683f9c46223dcba9aa8146b43c1115bf9aa76a657a09f") version("1.3-1.4", sha256="54142c931e15eca278a02dad5734026bb49d960471eb085008af825352953190") version("1.3-1.2", sha256="550e18f7c04186376d67747b8258f529d205bfc929da9194fe45ec384e092d7e") diff --git a/var/spack/repos/builtin/packages/r-rmarkdown/package.py b/var/spack/repos/builtin/packages/r-rmarkdown/package.py index 6b8f726e87..230caf5788 100644 --- a/var/spack/repos/builtin/packages/r-rmarkdown/package.py +++ b/var/spack/repos/builtin/packages/r-rmarkdown/package.py @@ -14,6 +14,7 @@ class RRmarkdown(RPackage): cran = "rmarkdown" + version("2.21", sha256="c25b20a422d11a115c93460f41c488874002154abb349b14e0d6518682fdac28") version("2.17", sha256="aa576c458ec4c2e8468aaa4e3f60202d8d9c7ef54fa01d6b2d243bffee08c4be") version("2.16", sha256="d3d34e0419c419d3ab20eb60952a0f0f4c391d202277af55dcd673d25561fa71") version("2.14", sha256="e9ec17afa4d9d6e8cf555b56e0c00acc189d8ec0b4406680b14d71d62f0c3220") @@ -29,6 +30,7 @@ class RRmarkdown(RPackage): depends_on("r@3.0:", type=("build", "run")) depends_on("r-bslib@0.2.5.1:", type=("build", "run"), when="@2.14:") depends_on("r-evaluate@0.13:", type=("build", "run")) + depends_on("r-fontawesome@0.5.0:", type=("build", "run"), when="@2.21:") depends_on("r-htmltools@0.3.5:", type=("build", "run")) depends_on("r-htmltools@0.5.1:", type=("build", "run"), when="@2.16:") depends_on("r-jquerylib", type=("build", "run"), when="@2.11:") @@ -41,6 +43,7 @@ class RRmarkdown(RPackage): depends_on("r-xfun@0.15:", type=("build", "run"), when="@2.6:") depends_on("r-xfun@0.21:", type=("build", "run"), when="@2.8:") depends_on("r-xfun@0.30:", type=("build", "run"), when="@2.14:") + depends_on("r-xfun@0.36:", type=("build", "run"), when="@2.21:") depends_on("r-yaml@2.1.19:", type=("build", "run")) depends_on("pandoc@1.12.3:") depends_on("pandoc@1.14:", when="@2.6:") diff --git a/var/spack/repos/builtin/packages/r-rmpfr/package.py b/var/spack/repos/builtin/packages/r-rmpfr/package.py index 1b737828c7..d89056495b 100644 --- a/var/spack/repos/builtin/packages/r-rmpfr/package.py +++ b/var/spack/repos/builtin/packages/r-rmpfr/package.py @@ -17,6 +17,7 @@ class RRmpfr(RPackage): cran = "Rmpfr" + version("0.9-2", sha256="ed63da32f3b970900c87cdb728eb16ed9fb0c79114cdecdc09e573f50ff7175e") version("0.8-9", sha256="cfee5ab47d49c6433c372a267f7d849c8f7c61a84e00d08afb047eaafcdbbc8a") version("0.8-7", sha256="93c2db785ff705dcfc6fa7f0373c2426cdc2ef72ceb5b294edeb2952775f57d2") version("0.8-2", sha256="74f6af1738b2cd21e7f2564b4cc2c84d5473a3745ba88ec76355d07fdd61f700") @@ -28,6 +29,7 @@ class RRmpfr(RPackage): depends_on("r@3.1.0:", type=("build", "run"), when="@0.7-0") depends_on("r@3.3.0:", type=("build", "run"), when="@0.7-1:") depends_on("r@3.5.0:", type=("build", "run"), when="@0.8-2:") + depends_on("r@3.6.0:", type=("build", "run"), when="@0.9-2:") depends_on("r-gmp@0.5-8:", type=("build", "run")) depends_on("r-gmp@0.6-1:", type=("build", "run"), when="@0.8-2:") depends_on("gmp@4.2.3:") diff --git a/var/spack/repos/builtin/packages/r-rmpi/package.py b/var/spack/repos/builtin/packages/r-rmpi/package.py index c3737bc6c0..d225ade2c3 100644 --- a/var/spack/repos/builtin/packages/r-rmpi/package.py +++ b/var/spack/repos/builtin/packages/r-rmpi/package.py @@ -14,6 +14,7 @@ class RRmpi(RPackage): cran = "Rmpi" + version("0.7-1", sha256="17dae27dea9317aacabc2255dfcf2538fb3195472cedd521256ced9a20dd2dc1") version("0.6-9.2", sha256="358ac1af97402e676f209261a231f36a35e60f0301edf8ca53dac11af3c3bd1a") version("0.6-9", sha256="b2e1eac3e56f6b26c7ce744b29d8994ab6507ac88df64ebbb5af439414651ee6") version("0.6-8", sha256="9b453ce3bd7284eda33493a0e47bf16db6719e3c48ac5f69deac6746f5438d96") diff --git a/var/spack/repos/builtin/packages/r-rms/package.py b/var/spack/repos/builtin/packages/r-rms/package.py index 4bacd62085..f44e171ee2 100644 --- a/var/spack/repos/builtin/packages/r-rms/package.py +++ b/var/spack/repos/builtin/packages/r-rms/package.py @@ -25,6 +25,7 @@ class RRms(RPackage): cran = "rms" + version("6.6-0", sha256="f3abadb94339f3aedadd27e1aceade069bcb53c94bf246626b0dc94b16b6625c") version("6.3-0", sha256="6c41eb670daf5e4391cc2f2a19e20a591f90769c124300a7ccf555820140d3f9") version("6.2-0", sha256="10d58cbfe39fb434223834e29e5248c9384cded23e6267cfc99367d0f5ee24b6") version("6.1-0", sha256="b89ec3b9211a093bfe83a2a8107989b5ce3b7b7c323b88a5d887d99753289f52") @@ -37,9 +38,9 @@ class RRms(RPackage): depends_on("r@3.5.0:", type=("build", "run")) depends_on("r-hmisc@4.3-0:", type=("build", "run")) depends_on("r-hmisc@4.7-0:", type=("build", "run"), when="@6.3-0:") + depends_on("r-hmisc@4.8-0:", type=("build", "run"), when="@6.6-0:") depends_on("r-survival@3.1-6:", type=("build", "run")) depends_on("r-survival@3.1-12:", type=("build", "run"), when="@6.1-0:") - depends_on("r-lattice", type=("build", "run")) depends_on("r-ggplot2@2.2:", type=("build", "run")) depends_on("r-sparsem", type=("build", "run")) depends_on("r-quantreg", type=("build", "run")) @@ -52,3 +53,7 @@ class RRms(RPackage): depends_on("r-mass", type=("build", "run"), when="@6.1-0:") depends_on("r-cluster", type=("build", "run"), when="@6.1-0:") depends_on("r-digest", type=("build", "run"), when="@6.1-0:") + depends_on("r-knitr", type=("build", "run"), when="@6.6-0:") + depends_on("r-kableextra", type=("build", "run"), when="@6.6-0:") + depends_on("r-colorspace", type=("build", "run"), when="@6.6-0:") + depends_on("r-lattice", type=("build", "run"), when="@:6.3-0") diff --git a/var/spack/repos/builtin/packages/r-rmysql/package.py b/var/spack/repos/builtin/packages/r-rmysql/package.py index dd6aa39e95..36ec34aa39 100644 --- a/var/spack/repos/builtin/packages/r-rmysql/package.py +++ b/var/spack/repos/builtin/packages/r-rmysql/package.py @@ -15,6 +15,7 @@ class RRmysql(RPackage): cran = "RMySQL" + version("0.10.25", sha256="ed130f9bd80ea9fd5b4fdbb6fa094c35646354507de68eb3d19a3cbc8b5a4794") version("0.10.24", sha256="ca1b9aacab6d76866ba09210ae881c3a7555bd5144ea0a0a446fceff80637241") version("0.10.23", sha256="f4ac7ed4fba83749819c07ce32d53ee024cf1cedebbda3b832644bff9edf4a15") version("0.10.21", sha256="3a6bf06d32d66c7c958d4f89ed517614171a7fd254ef6f4d40f4c5982c2d6b31") @@ -23,4 +24,4 @@ class RRmysql(RPackage): depends_on("r@2.8.0:", type=("build", "run")) depends_on("r-dbi@0.4:", type=("build", "run")) - depends_on("mysql") + depends_on("mariadb-client") diff --git a/var/spack/repos/builtin/packages/r-rncl/package.py b/var/spack/repos/builtin/packages/r-rncl/package.py index a195b1fa1f..f03506f8ea 100644 --- a/var/spack/repos/builtin/packages/r-rncl/package.py +++ b/var/spack/repos/builtin/packages/r-rncl/package.py @@ -17,6 +17,7 @@ class RRncl(RPackage): cran = "rncl" + version("0.8.7", sha256="1d876e4f5f2b8a24cc3ea1002c29eedbc0ca96011b0fa15b085e5b75cfc7993a") version("0.8.6", sha256="fcc972c04fb43ace0876eb640a6433caddf6ec8304f7ceee37107d812ce68ffb") version("0.8.4", sha256="6b19d0dd9bb08ecf99766be5ad684bcd1894d1cd9291230bdd709dbd3396496b") diff --git a/var/spack/repos/builtin/packages/r-rnexml/package.py b/var/spack/repos/builtin/packages/r-rnexml/package.py index 05c58ac352..97f2cfd91f 100644 --- a/var/spack/repos/builtin/packages/r-rnexml/package.py +++ b/var/spack/repos/builtin/packages/r-rnexml/package.py @@ -16,6 +16,7 @@ class RRnexml(RPackage): cran = "RNeXML" + version("2.4.11", sha256="246913cbb0e816401bb8e37dda20646202547f5cc8379c9dadf832f61d6cfd46") version("2.4.8", sha256="26d429f95afe2e24d79eb7b0d3eeec4068e7d33b715abb8f48f380e0ccbbb850") version("2.4.7", sha256="cb311d6dda33a95521a6df360a2d2f4e6d6bc6b330ac5e19ea721ca665bce6fe") version("2.4.5", sha256="2b667ecb6400e4c0c125ca73a98cde81330cde3a85b764261f77159e702754f3") @@ -34,5 +35,4 @@ class RRnexml(RPackage): depends_on("r-stringi", type=("build", "run")) depends_on("r-xml2", type=("build", "run")) depends_on("r-rlang", type=("build", "run"), when="@2.4.7:") - depends_on("r-lazyeval@0.1.0:", type=("build", "run")) - depends_on("r-lazyeval", when="@:2.4.7") + depends_on("r-lazyeval@0.1.0:", type=("build", "run"), when="@:2.4.7") diff --git a/var/spack/repos/builtin/packages/r-robustbase/package.py b/var/spack/repos/builtin/packages/r-robustbase/package.py index 6a9c0e15d0..68a278c4ca 100644 --- a/var/spack/repos/builtin/packages/r-robustbase/package.py +++ b/var/spack/repos/builtin/packages/r-robustbase/package.py @@ -17,6 +17,7 @@ class RRobustbase(RPackage): cran = "robustbase" + version("0.95-1", sha256="862cd26db3ecdf34ab47c52d355fd65ffebbff448aea17999a9b95a1f13ba3ea") version("0.95-0", sha256="5cfaea1c46df6d45086614fea5f152c8da8ebfcadf33bb8df5b82e742eef9724") version("0.93-9", sha256="d75fb5075463fec61d063bced7003936e9198492328b6fae15f67e8415713c45") version("0.93-7", sha256="8911d2d0fdca5e2627033e046279f9d106e25ce98d588f9ccc4d8e4b42680956") diff --git a/var/spack/repos/builtin/packages/r-rodbc/package.py b/var/spack/repos/builtin/packages/r-rodbc/package.py index b75b0e2774..218e5387e7 100644 --- a/var/spack/repos/builtin/packages/r-rodbc/package.py +++ b/var/spack/repos/builtin/packages/r-rodbc/package.py @@ -13,6 +13,7 @@ class RRodbc(RPackage): cran = "RODBC" + version("1.3-20", sha256="7f157bd1ca2502bea4247260aac5b0f3aa1026ddffe5c50b026f2d59c210fbd6") version("1.3-19", sha256="3afcbd6877cd8b7c8df4a94bacd041a51e5ac607810acb88efd380b45d2d4efe") version("1.3-17", sha256="469fc835f65c344d5c3eaa097ff278ee8e9f12f845722a9aad340115faa704f7") version("1.3-15", sha256="c43e5a2f0aa2f46607e664bfc0bb3caa230bbb779f4ff084e01727642da136e1") diff --git a/var/spack/repos/builtin/packages/r-roxygen2/package.py b/var/spack/repos/builtin/packages/r-roxygen2/package.py index fabd63a77a..be585b7451 100644 --- a/var/spack/repos/builtin/packages/r-roxygen2/package.py +++ b/var/spack/repos/builtin/packages/r-roxygen2/package.py @@ -16,6 +16,7 @@ class RRoxygen2(RPackage): cran = "roxygen2" + version("7.2.3", sha256="d844fab977d2575ab942fa1309ac7ff67f35f099a75d8b41c79efe6ea10416da") version("7.2.1", sha256="d2f0342591dc2b561fad8f6cf6fb3001e5e0bdd02be68bb2c6315f6bb82cda21") version("7.2.0", sha256="2ebfcfd567b9db6c606c6d42be1645b4e987f987995a2ad8954fa963a519448b") version("7.1.2", sha256="b3693d1eb57bb1c27134447ea7f64c353c085dd2237af7cfacc75fca3d2fc5fd") @@ -32,7 +33,6 @@ class RRoxygen2(RPackage): depends_on("r-cli@3.3.0:", type=("build", "run"), when="@7.2.0:") depends_on("r-commonmark", type=("build", "run")) depends_on("r-desc@1.2.0:", type=("build", "run")) - depends_on("r-digest", type=("build", "run")) depends_on("r-knitr", type=("build", "run"), when="@7.1.0:") depends_on("r-pkgload@1.0.2:", type=("build", "run")) depends_on("r-purrr", type=("build", "run")) @@ -40,6 +40,7 @@ class RRoxygen2(RPackage): depends_on("r-r6@2.1.2:", type=("build", "run")) depends_on("r-rlang", type=("build", "run"), when="@7.1.0:") depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@7.2.0:") + depends_on("r-rlang@1.0.6:", type=("build", "run"), when="@7.2.3:") depends_on("r-stringi", type=("build", "run")) depends_on("r-stringr@1.0.0:", type=("build", "run")) depends_on("r-withr", type=("build", "run"), when="@7.2.0:") @@ -47,3 +48,4 @@ class RRoxygen2(RPackage): depends_on("r-cpp11", type=("build", "run"), when="@7.1.2:") depends_on("r-rcpp@0.11.0:", type=("build", "run"), when="@:7.1.1") + depends_on("r-digest", type=("build", "run"), when="@:7.2.1") diff --git a/var/spack/repos/builtin/packages/r-rpostgres/package.py b/var/spack/repos/builtin/packages/r-rpostgres/package.py index aa0f653d26..f48ab447e3 100644 --- a/var/spack/repos/builtin/packages/r-rpostgres/package.py +++ b/var/spack/repos/builtin/packages/r-rpostgres/package.py @@ -14,6 +14,7 @@ class RRpostgres(RPackage): cran = "RPostgres" + version("1.4.5", sha256="70ff848cba51ddad4642a20e01cda1033e6f218b015a13380c30604bbd18c797") version("1.4.4", sha256="c9cc0648c432f837fd0eb4922db4903357244d5a2cedd04ea236f249b08acdfc") version("1.4.3", sha256="a5be494a54b6e989fadafdc6ee2dc5c4c15bb17bacea9ad540b175c693331be2") version("1.3.1", sha256="f68ab095567317ec32d3faa10e5bcac400aee5aeca8d7132260d4e90f82158ea") diff --git a/var/spack/repos/builtin/packages/r-rpostgresql/package.py b/var/spack/repos/builtin/packages/r-rpostgresql/package.py index 160bec3cdc..b8b6450070 100644 --- a/var/spack/repos/builtin/packages/r-rpostgresql/package.py +++ b/var/spack/repos/builtin/packages/r-rpostgresql/package.py @@ -21,6 +21,7 @@ class RRpostgresql(RPackage): cran = "RPostgreSQL" + version("0.7-5", sha256="6b5401ee55bd948ae7bc84520d789ceb422533a7d5e5bd6e10e3b54447f29fa1") version("0.7-4", sha256="b6adf60094f2b03dff1959147cde7f61c2f4c4576d77b2a263c63f8e3cd556c6") version("0.7-3", sha256="bdbca10329aeb357f05364772964716dfb5ce2470f7eb4a33770862b6ded71b9") version("0.6-2", sha256="080118647208bfa2621bcaac0d324891cc513e07618fa22e3c50ec2050e1b0d5") diff --git a/var/spack/repos/builtin/packages/r-rsconnect/package.py b/var/spack/repos/builtin/packages/r-rsconnect/package.py index 5bc16db10e..594cb9876c 100644 --- a/var/spack/repos/builtin/packages/r-rsconnect/package.py +++ b/var/spack/repos/builtin/packages/r-rsconnect/package.py @@ -15,6 +15,7 @@ class RRsconnect(RPackage): cran = "rsconnect" + version("0.8.29", sha256="852899d2aaf90bcedf4d191a9e00c770e8ee4233235169fc97e6aa636de01c43") version("0.8.28", sha256="25b9a947772ada9593da5c48297b7a7dd0e11aa73fbb9a282631c75ec49616e0") version("0.8.27", sha256="0a44d5605fc7cd6855ea0235d662e4a323a24a2c214cc4f1696afbca3a8f169c") version("0.8.26", sha256="faafabbed803743799b345051f221aef2b4497b421fc98092ca41c05ef6b5fed") diff --git a/var/spack/repos/builtin/packages/r-rsnns/package.py b/var/spack/repos/builtin/packages/r-rsnns/package.py index 3484ad30f8..fdc710b74d 100644 --- a/var/spack/repos/builtin/packages/r-rsnns/package.py +++ b/var/spack/repos/builtin/packages/r-rsnns/package.py @@ -20,6 +20,7 @@ class RRsnns(RPackage): cran = "RSNNS" + version("0.4-15", sha256="4a4286444f50b28fb6294b8b49250fa6c43c8fddf2ee0550a3ae59a4212ec1b3") version("0.4-14", sha256="7f6262cb2b49b5d5979ccce9ded9cbb2c0b348fd7c9eabc1ea1d31c51a102c20") version("0.4-12", sha256="b18dfeda71573bc92c6888af72da407651bff7571967965fd3008f0d331743b9") version("0.4-11", sha256="87943126e98ae47f366e3025d0f3dc2f5eb0aa2924508fd9ee9a0685d7cb477c") diff --git a/var/spack/repos/builtin/packages/r-rsqlite/package.py b/var/spack/repos/builtin/packages/r-rsqlite/package.py index 3552a61253..a41e985fd2 100644 --- a/var/spack/repos/builtin/packages/r-rsqlite/package.py +++ b/var/spack/repos/builtin/packages/r-rsqlite/package.py @@ -15,6 +15,7 @@ class RRsqlite(RPackage): cran = "RSQLite" + version("2.3.1", sha256="9ed23e160c401c14e41c40e9930f72697172b2c72933c2d2725a05e81e1f34ca") version("2.2.18", sha256="62196adb62ad8ec73ddce573e5391686e9359566e365b123ac4f299809944bea") version("2.2.14", sha256="2ae36a875ebc02497985b2ad9ddc6a5434f576e2ab25769580749d9e4f3b607c") version("2.2.10", sha256="06aeff33902082ef1ebd5378cd0927df7922aaf377c78acfdd8f34f2888800a8") @@ -31,8 +32,9 @@ class RRsqlite(RPackage): depends_on("r-dbi@1.1.0:", type=("build", "run"), when="@2.2.10:") depends_on("r-memoise", type=("build", "run")) depends_on("r-pkgconfig", type=("build", "run")) - depends_on("r-rcpp@0.12.7:", type=("build", "run")) - depends_on("r-rcpp@1.0.7:", type=("build", "run"), when="@2.2.9:") depends_on("r-plogr@0.2.0:", type=("build", "run")) + depends_on("r-cpp11@0.4.0:", type=("build", "run"), when="@2.3.1:") depends_on("r-bh", type=("build", "run"), when="@:2.2.2") + depends_on("r-rcpp@0.12.7:", type=("build", "run"), when="@:2.2.18") + depends_on("r-rcpp@1.0.7:", type=("build", "run"), when="@2.2.9:2.2.18") diff --git a/var/spack/repos/builtin/packages/r-rstatix/package.py b/var/spack/repos/builtin/packages/r-rstatix/package.py index 1d1e7b8a85..b8c3186fa5 100644 --- a/var/spack/repos/builtin/packages/r-rstatix/package.py +++ b/var/spack/repos/builtin/packages/r-rstatix/package.py @@ -26,6 +26,7 @@ class RRstatix(RPackage): cran = "rstatix" + version("0.7.2", sha256="e0c6f5ab1d9c5d84713defabc5d149aad3d55944cffdb903cc128b694e5221a1") version("0.7.0", sha256="a5ae17dc32cc26fc5dcab9ff0a9747ce3786c9fe091699247ad8b9f823f2600c") version("0.6.0", sha256="ebb28e20c7e28809194a2a027bc83303b17be1e3db32f49325727c9279df9c5b") @@ -40,5 +41,6 @@ class RRstatix(RPackage): depends_on("r-magrittr", type=("build", "run")) depends_on("r-corrplot", type=("build", "run")) depends_on("r-tidyselect@1.0.0:", type=("build", "run")) + depends_on("r-tidyselect@1.2.0:", type=("build", "run"), when="@0.7.2:") depends_on("r-car", type=("build", "run")) depends_on("r-generics@0.0.2:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-s2/package.py b/var/spack/repos/builtin/packages/r-s2/package.py index 14da26bc40..2f547b044e 100644 --- a/var/spack/repos/builtin/packages/r-s2/package.py +++ b/var/spack/repos/builtin/packages/r-s2/package.py @@ -18,6 +18,7 @@ class RS2(RPackage): cran = "s2" + version("1.1.2", sha256="8fb237531c6f4aa5b78fbe36d4fd15bfe852c1308fed58b04b3dae2bb73c0b57") version("1.1.0", sha256="e3aae968538fe80db5b3325474dd9d8ff7f0452b6c606d049a3cac72732ac416") version("1.0.7", sha256="2010c1c6ae29938ec9cd153a8b2c06a333ea4d647932369b2fc7d0c68d6d9e3f") version("1.0.4", sha256="3c274ebae33aa5473f94afb3066c6f388aced17ff3b5f6add9edcc9af22b985e") diff --git a/var/spack/repos/builtin/packages/r-sass/package.py b/var/spack/repos/builtin/packages/r-sass/package.py index 8471b5fa1a..a76144cac7 100644 --- a/var/spack/repos/builtin/packages/r-sass/package.py +++ b/var/spack/repos/builtin/packages/r-sass/package.py @@ -16,6 +16,7 @@ class RSass(RPackage): cran = "sass" + version("0.4.5", sha256="eba161d982d2db108c8c0b61ec6b41a20d3adec430c7cc39537ab388c1007a90") version("0.4.2", sha256="b409049d0de9fae853f46c19d353226c8e9244ce847bdada033d8669fc2c9646") version("0.4.1", sha256="850fcb6bd49085d5afd25ac18da0744234385baf1f13d8c0a320f4da2de608bb") version("0.4.0", sha256="7d06ca15239142a49e88bb3be494515abdd8c75f00f3f1b0ee7bccb55019bc2b") diff --git a/var/spack/repos/builtin/packages/r-scatterpie/package.py b/var/spack/repos/builtin/packages/r-scatterpie/package.py index 2b2da2a668..4af673eaa1 100644 --- a/var/spack/repos/builtin/packages/r-scatterpie/package.py +++ b/var/spack/repos/builtin/packages/r-scatterpie/package.py @@ -13,6 +13,7 @@ class RScatterpie(RPackage): cran = "scatterpie" + version("0.1.9", sha256="517fd6cc297aa33f0fbb2643e35ca41dc971166ea2e8ed78460bd4ef7a77a687") version("0.1.8", sha256="a6ccc63a8be63fa113704cf5d4893c1ec1b75d3081ab971bd70e650e708872a0") version("0.1.7", sha256="3f7807519cfe135066ca79c8d8a09b59da9aa6d8aaee5e9aff40cca3d0bebade") version("0.1.5", sha256="e13237b7effc302acafc1c9b520b4904e55875f4a3b804f653eed2940ca08840") @@ -23,5 +24,6 @@ class RScatterpie(RPackage): depends_on("r-rlang", type=("build", "run")) depends_on("r-ggfun", type=("build", "run"), when="@0.1.7:") depends_on("r-tidyr", type=("build", "run")) + depends_on("r-dplyr", type=("build", "run"), when="@0.1.9:") depends_on("r-rvcheck", type=("build", "run"), when="@:0.1.5") diff --git a/var/spack/repos/builtin/packages/r-scatterplot3d/package.py b/var/spack/repos/builtin/packages/r-scatterplot3d/package.py index e002c624ba..76d4193f3f 100644 --- a/var/spack/repos/builtin/packages/r-scatterplot3d/package.py +++ b/var/spack/repos/builtin/packages/r-scatterplot3d/package.py @@ -13,6 +13,7 @@ class RScatterplot3d(RPackage): cran = "scatterplot3d" + version("0.3-43", sha256="90d7bfb535b76008768306ea9209adfb48e0e07f36eabbb59ab6ddb6522f16a5") version("0.3-42", sha256="a9fedde70e1a846c4dcafbff20f115425206d507896d12c2b21ff052556c5216") version("0.3-41", sha256="4c8326b70a3b2d37126ca806771d71e5e9fe1201cfbe5b0d5a0a83c3d2c75d94") version("0.3-40", sha256="8249118aa29199017a6686d8245fed5343dabcf049b1588141a7cf83245b6a29") diff --git a/var/spack/repos/builtin/packages/r-scs/package.py b/var/spack/repos/builtin/packages/r-scs/package.py index 52b89f42ed..47b86dbc47 100644 --- a/var/spack/repos/builtin/packages/r-scs/package.py +++ b/var/spack/repos/builtin/packages/r-scs/package.py @@ -20,6 +20,7 @@ class RScs(RPackage): cran = "scs" + version("3.2.4", sha256="c3f39874bf4532fa8c2f2e2c41533ba4fe20b61cf6dfc6314407dc981621298f") version("3.0-1", sha256="d6881eeec7282f8bfbf60847327786e7f90299e4b8c0b084d8bd11fec7705913") depends_on("r@3.5.0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-sctransform/package.py b/var/spack/repos/builtin/packages/r-sctransform/package.py index db57feda65..aaef9183d2 100644 --- a/var/spack/repos/builtin/packages/r-sctransform/package.py +++ b/var/spack/repos/builtin/packages/r-sctransform/package.py @@ -30,7 +30,7 @@ class RSctransform(RPackage): depends_on("r-magrittr", type=("build", "run"), when="@0.3.3:") depends_on("r-mass", type=("build", "run")) depends_on("r-matrix", type=("build", "run")) - depends_on("r-matrix@1.5.0:", type=("build", "run"), when="@0.3.5:") + depends_on("r-matrix@1.5-0:", type=("build", "run"), when="@0.3.5:") depends_on("r-future-apply", type=("build", "run")) depends_on("r-future", type=("build", "run")) depends_on("r-ggplot2", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-segmented/package.py b/var/spack/repos/builtin/packages/r-segmented/package.py index 2cc80ee9fb..c9dd2cb54b 100644 --- a/var/spack/repos/builtin/packages/r-segmented/package.py +++ b/var/spack/repos/builtin/packages/r-segmented/package.py @@ -20,6 +20,7 @@ class RSegmented(RPackage): cran = "segmented" + version("1.6-4", sha256="472c08ae3eb1c4e784aba45f3e745b0e946bef77c26fbb9f103fd35e1a349191") version("1.6-1", sha256="f609ca311c8ca45a7b0776b47d9df06aa175c4f17f8e7e9b33c64902ee00d56f") version("1.6-0", sha256="6baf7f0a4f5d37b945312d28fcbca47cc3c171d097c43a28cf7ffc998a4ce569") version("1.4-0", sha256="306940d3fe38588d5f52a52a217b560620b9ec9f338b32f604dfd78ffd43c276") diff --git a/var/spack/repos/builtin/packages/r-seqinr/package.py b/var/spack/repos/builtin/packages/r-seqinr/package.py index 72e46226a0..4115f90af2 100644 --- a/var/spack/repos/builtin/packages/r-seqinr/package.py +++ b/var/spack/repos/builtin/packages/r-seqinr/package.py @@ -16,6 +16,7 @@ class RSeqinr(RPackage): cran = "seqinr" + version("4.2-30", sha256="faf8fe533867eeef57fddfa6592e19d5984954d0670c6c7dbeab6411d55fee4b") version("4.2-16", sha256="c4f3253832fc255197bdce7b4dd381db606c6b787d2e888751b4963acf3a4032") version("4.2-8", sha256="584b34e9dec0320cef02096eb356a0f6115bbd24356cf62e67356963e9d5e9f7") version("4.2-5", sha256="de9860759c23af2ec2f2ef03b5dd1cea72c804438eadd369b7d9269bdf8d32fc") @@ -23,6 +24,7 @@ class RSeqinr(RPackage): version("3.3-6", sha256="42a3ae01331db744d67cc9c5432ce9ae389bed465af826687b9c10216ac7a08d") depends_on("r@2.10:", type=("build", "run")) + depends_on("r@2.10.0:", type=("build", "run"), when="@4.2-30:") depends_on("r-ade4", type=("build", "run")) depends_on("r-segmented", type=("build", "run")) depends_on("zlib") diff --git a/var/spack/repos/builtin/packages/r-servr/package.py b/var/spack/repos/builtin/packages/r-servr/package.py index 48dcdd286d..aec8be0bf6 100644 --- a/var/spack/repos/builtin/packages/r-servr/package.py +++ b/var/spack/repos/builtin/packages/r-servr/package.py @@ -15,6 +15,7 @@ class RServr(RPackage): cran = "servr" + version("0.26", sha256="7588d7e00d5b2f77b0737f164f3d7b0ba7b1e8b60c0372a1d6452096e2d2031c") version("0.25", sha256="e6ae0d4c09e9037268b1c291c36c93ba0a74c31fe2fcb1f0652b2ae9fca5e73c") version("0.24", sha256="d94e1d31802ce6bbab7a5838ff94cbca8cd998237d834ff25fedf7514f41a087") version("0.21", sha256="3fc0da063dd04b796a49ce62bf8e69d5854679520da90cc92ee3fc0a0b2ad389") diff --git a/var/spack/repos/builtin/packages/r-seurat/package.py b/var/spack/repos/builtin/packages/r-seurat/package.py index 76cecdeb46..d5564e07d3 100644 --- a/var/spack/repos/builtin/packages/r-seurat/package.py +++ b/var/spack/repos/builtin/packages/r-seurat/package.py @@ -19,6 +19,7 @@ class RSeurat(RPackage): cran = "Seurat" + version("4.3.0", sha256="7ebacb3b86f74279de60b597f9a6e728f0668719811b0dca3425d21762fff97c") version("4.2.1", sha256="410238b6ca147451b43800a6e49c132fa5f6aacfe6b93b39a1e4d61257a9e35e") version("4.2.0", sha256="22a3d22a9ba255c4db5b37339b183fdfb91e2d37a8b8d58a9ff45b1bc414ebef") version("4.1.1", sha256="201aa96919b32378fc4cb67557188214c1242dcbae50cadd7d12c86666af8ace") @@ -53,8 +54,7 @@ class RSeurat(RPackage): depends_on("r-lmtest", type=("build", "run"), when="@2.3.0:") depends_on("r-mass", type=("build", "run")) depends_on("r-matrix@1.2-14:", type=("build", "run")) - depends_on("r-matrix@1.5.0:", type=("build", "run"), when="@4.2.0:") - depends_on("r-matrix@1.5-0:", type=("build", "run"), when="@4.2.1:") + depends_on("r-matrix@1.5-0:", type=("build", "run"), when="@4.2.0:") depends_on("r-matrixstats", type=("build", "run"), when="@3.2.3:") depends_on("r-miniui", type=("build", "run"), when="@3.2.3:") depends_on("r-patchwork", type=("build", "run"), when="@3.2.3:") @@ -62,6 +62,7 @@ class RSeurat(RPackage): depends_on("r-plotly", type=("build", "run")) depends_on("r-plotly@4.9.0:", type=("build", "run"), when="@3.2.3:") depends_on("r-png", type=("build", "run"), when="@2.3.0:") + depends_on("r-progressr", type=("build", "run"), when="@4.3.0:") depends_on("r-rann", type=("build", "run"), when="@2.3.0:") depends_on("r-rcolorbrewer", type=("build", "run")) depends_on("r-rcpp@0.11.0:", type=("build", "run")) @@ -126,5 +127,4 @@ class RSeurat(RPackage): depends_on("r-rsvd", type=("build", "run"), when="@3.0.0:3.2.3") depends_on("r-spatstat@:1.64-1", type=("build", "run"), when="@3.2.3") depends_on("java", when="@:2.3.0") - depends_on("r-spatstat-core", type=("build", "run"), when="@4.1.0:") - depends_on("r-spatstat-core", when="@:4.2.0") + depends_on("r-spatstat-core", type=("build", "run"), when="@4.1.0:4.2.0") diff --git a/var/spack/repos/builtin/packages/r-seuratobject/package.py b/var/spack/repos/builtin/packages/r-seuratobject/package.py index 8ef88a11da..1f443880a2 100644 --- a/var/spack/repos/builtin/packages/r-seuratobject/package.py +++ b/var/spack/repos/builtin/packages/r-seuratobject/package.py @@ -29,12 +29,12 @@ class RSeuratobject(RPackage): depends_on("r-future", type=("build", "run"), when="@4.1.0:") depends_on("r-future-apply", type=("build", "run"), when="@4.1.0:") depends_on("r-matrix@1.3-3:", type=("build", "run")) - depends_on("r-matrix@1.5.0:", type=("build", "run"), when="@4.1.2:") + depends_on("r-matrix@1.5-0:", type=("build", "run"), when="@4.1.2:") depends_on("r-progressr", type=("build", "run"), when="@4.1.0:") depends_on("r-rcpp@1.0.5:", type=("build", "run")) depends_on("r-sp", type=("build", "run"), when="@4.1.0:") - depends_on("r-sp@1.5.0:", type=("build", "run"), when="@4.1.2:") + depends_on("r-sp@1.5-0:", type=("build", "run"), when="@4.1.2:") depends_on("r-rlang@0.4.7:", type=("build", "run")) depends_on("r-rcppeigen", type=("build", "run")) - depends_on("r-rgeos", type=("build", "run"), when="@4.1.0:") - depends_on("r-rgeos", when="@:4.1.2") + + depends_on("r-rgeos", type=("build", "run"), when="@4.1.0:4.1.2") diff --git a/var/spack/repos/builtin/packages/r-sf/package.py b/var/spack/repos/builtin/packages/r-sf/package.py index 0ecaef7b2d..d06183e8b0 100644 --- a/var/spack/repos/builtin/packages/r-sf/package.py +++ b/var/spack/repos/builtin/packages/r-sf/package.py @@ -17,6 +17,7 @@ class RSf(RPackage): cran = "sf" + version("1.0-12", sha256="3778ebf58d824b1dfa6297ca8363714d5d85eda04c55ab2bf39597cac1d91287") version("1.0-9", sha256="85c0c71a0a64750281e79aa96e36d13e6285927008b2d37d699e52aba7d8013b") version("1.0-8", sha256="3ddc7090e79d6b5e3fad69e01254677ab5ec86a0b25e7e73493c8eac0ea98732") version("1.0-7", sha256="d0731fab9438d73a55af7232f0474b36f4b2a4e6d66adaa141632f4a60265453") @@ -34,13 +35,12 @@ class RSf(RPackage): depends_on("r-rcpp@0.12.18:", type=("build", "run")) depends_on("r-s2@1.0.7:", type=("build", "run"), when="@1.0-5:") depends_on("r-s2@1.1.0:", type=("build", "run"), when="@1.0-9:") + depends_on("r-units", type=("build", "run")) depends_on("r-units@0.6-0:", type=("build", "run"), when="@1.0-5:") + depends_on("r-units@0.7-0:", type=("build", "run"), when="@1.0-8:") depends_on("gdal@2.0.1:") depends_on("geos@3.4.0:") depends_on("proj@4.8.0:5", when="@:0.7-3") depends_on("proj@4.8.0:6", when="@0.7-4:0.7-7") depends_on("proj@4.8.0:") - depends_on("sqlite", when="@0.9-7") - - depends_on("r-units@0.6-0:", type=("build", "run"), when="@:9.9-7") - depends_on("r-units@0.7-0:", type=("build", "run"), when="@1.0-8:") + depends_on("sqlite", when="@0.9-7:") diff --git a/var/spack/repos/builtin/packages/r-sfheaders/package.py b/var/spack/repos/builtin/packages/r-sfheaders/package.py index 5862f55f4d..e40e6d7881 100644 --- a/var/spack/repos/builtin/packages/r-sfheaders/package.py +++ b/var/spack/repos/builtin/packages/r-sfheaders/package.py @@ -15,7 +15,11 @@ class RSfheaders(RPackage): cran = "sfheaders" + version("0.4.2", sha256="ed9fb934c537fb6f126886f8e5997727de856e32fc3d38911b61a3a83faa7b2c") version("0.4.0", sha256="86bcd61018a0491fc8a1e7fb0422c918296287b82be299a79ccee8fcb515e045") depends_on("r-geometries@0.2.0:", type=("build", "run")) + depends_on("r-geometries@0.2.2:", type=("build", "run"), when="@0.4.2:") depends_on("r-rcpp", type=("build", "run")) + depends_on("r-rcpp@1.0.10:", type=("build", "run"), when="@0.4.2:") + depends_on("r@3.0.2:", type=("build", "run"), when="@0.4.2:") diff --git a/var/spack/repos/builtin/packages/r-sfsmisc/package.py b/var/spack/repos/builtin/packages/r-sfsmisc/package.py index 0bb37195ff..66f2eeb3b4 100644 --- a/var/spack/repos/builtin/packages/r-sfsmisc/package.py +++ b/var/spack/repos/builtin/packages/r-sfsmisc/package.py @@ -21,6 +21,7 @@ class RSfsmisc(RPackage): cran = "sfsmisc" + version("1.1-15", sha256="4afa42cf83a287f62cac21741fc0559dee9dbd69dee59a740defce9a0e7c81e6") version("1.1-13", sha256="a81710357de2dcdaf00d9fa30a29cde0dd83616edc358452fd6105ea88f34218") version("1.1-12", sha256="9b12184a28fff87cacd0c3602d0cf63acb4d0f3049ad3a6ff16177f6df350782") version("1.1-8", sha256="b6556af5f807f0769489657a676422cb0734f3d6c918543d2989ef17febc1fa5") diff --git a/var/spack/repos/builtin/packages/r-shiny/package.py b/var/spack/repos/builtin/packages/r-shiny/package.py index 270aa4efb0..bc060627e1 100644 --- a/var/spack/repos/builtin/packages/r-shiny/package.py +++ b/var/spack/repos/builtin/packages/r-shiny/package.py @@ -16,6 +16,7 @@ class RShiny(RPackage): cran = "shiny" + version("1.7.4", sha256="bbfcdd7375013b8f59248b3f3f4e752acd445feb25179f3f7f65cd69614da4b5") version("1.7.3", sha256="b8ca9a39fa69ea9b270a7e9037198d95122c79bd493b865d909d343dd3523ada") version("1.7.2", sha256="23b5bfee8d597b4147e07c89391a735361cd9f69abeecfd9bd38a14d35fe6252") version("1.7.1", sha256="c03b2056fb41430352c7c0e812bcc8632e6ec4caef077d2f7633512d91721d00") @@ -35,6 +36,7 @@ class RShiny(RPackage): depends_on("r-htmltools@0.3.6:", type=("build", "run")) depends_on("r-htmltools@0.4.0.9003:", type=("build", "run"), when="@1.5.0:") depends_on("r-htmltools@0.5.2:", type=("build", "run"), when="@1.7.1:") + depends_on("r-htmltools@0.5.4:", type=("build", "run"), when="@1.7.4:") depends_on("r-r6@2.0:", type=("build", "run")) depends_on("r-sourcetools", type=("build", "run")) depends_on("r-later@0.7.2:", type=("build", "run"), when="@1.1.0:") diff --git a/var/spack/repos/builtin/packages/r-signac/package.py b/var/spack/repos/builtin/packages/r-signac/package.py index 991e500d8e..669775b096 100644 --- a/var/spack/repos/builtin/packages/r-signac/package.py +++ b/var/spack/repos/builtin/packages/r-signac/package.py @@ -18,6 +18,7 @@ class RSignac(RPackage): cran = "Signac" + version("1.9.0", sha256="b8ff36427e5919fd420daa1f50cf8c71935293ee7f88560041acb993b5e3afa8") version("1.8.0", sha256="9c4b123f4d077111c7e6dd1659483ada984300c8e923672ca924e46fb6a1dd06") version("1.7.0", sha256="5e4456eeab29fa2df7f6236b050dec8cb9c073d7652a89ee5030a27f94e5e4bf") diff --git a/var/spack/repos/builtin/packages/r-smoof/package.py b/var/spack/repos/builtin/packages/r-smoof/package.py index b83309608b..7cb7eda5a1 100644 --- a/var/spack/repos/builtin/packages/r-smoof/package.py +++ b/var/spack/repos/builtin/packages/r-smoof/package.py @@ -17,6 +17,7 @@ class RSmoof(RPackage): cran = "smoof" + version("1.6.0.3", sha256="af8664b152876c545f6545528de6e05a289d0714103fac7afc52960a9a855fb1") version("1.6.0.2", sha256="d82dba9702eade00afb84c2c12167de6cec790be7d23ac227f8fe705bdcefc93") version("1.5.1", sha256="cfb6f6460e9593351428656b225b5ba3867a216d35a05f2babdb20db6ba35306") version("1.5", sha256="9b73ad5bfc8e1120c9651539ea52b1468f316cc7fc5fef8afd6d357adf01504c") @@ -26,10 +27,10 @@ class RSmoof(RPackage): depends_on("r-checkmate@1.1:", type=("build", "run")) depends_on("r-bbmisc@1.6:", type=("build", "run")) depends_on("r-ggplot2@2.2.1:", type=("build", "run")) - depends_on("r-rcolorbrewer", type=("build", "run")) - depends_on("r-plot3d", type=("build", "run")) - depends_on("r-plotly", type=("build", "run")) - depends_on("r-mco", type=("build", "run")) depends_on("r-rcpp@0.11.0:", type=("build", "run")) - depends_on("r-rjsonio", type=("build", "run")) depends_on("r-rcpparmadillo", type=("build", "run")) + depends_on("r-mco", type=("build", "run"), when="@:1.6.0.2") + depends_on("r-plot3d", type=("build", "run"), when="@:1.6.0.2") + depends_on("r-plotly", type=("build", "run"), when="@:1.6.0.2") + depends_on("r-rcolorbrewer", type=("build", "run"), when="@:1.6.0.2") + depends_on("r-rjsonio", type=("build", "run"), when="@:1.6.0.2") diff --git a/var/spack/repos/builtin/packages/r-snpstats/package.py b/var/spack/repos/builtin/packages/r-snpstats/package.py index 0e187eea05..c62b8ec4b0 100644 --- a/var/spack/repos/builtin/packages/r-snpstats/package.py +++ b/var/spack/repos/builtin/packages/r-snpstats/package.py @@ -30,3 +30,4 @@ class RSnpstats(RPackage): depends_on("r-matrix", type=("build", "run")) depends_on("r-biocgenerics", type=("build", "run")) depends_on("r-zlibbioc", type=("build", "run")) + depends_on("zlib") diff --git a/var/spack/repos/builtin/packages/r-sourcetools/package.py b/var/spack/repos/builtin/packages/r-sourcetools/package.py index 80f65eddf0..0d58744285 100644 --- a/var/spack/repos/builtin/packages/r-sourcetools/package.py +++ b/var/spack/repos/builtin/packages/r-sourcetools/package.py @@ -15,6 +15,7 @@ class RSourcetools(RPackage): cran = "sourcetools" + version("0.1.7-1", sha256="96812bdb7a0dd99690d84e4b0a3def91389e4290f53f01919ef28a50554e31d1") version("0.1.7", sha256="47984406efb3b3face133979ccbae9fefb7360b9a6ca1a1c11473681418ed2ca") version("0.1.6", sha256="c9f48d2f0b7f7ed0e7fecdf8e730b0b80c4d567f0e1e880d118b0944b1330c51") version("0.1.5", sha256="c2373357ad76eaa7d03f9f01c19b5001a3e4db788acbca068b0abbe7a99ea64b") diff --git a/var/spack/repos/builtin/packages/r-sp/package.py b/var/spack/repos/builtin/packages/r-sp/package.py index b3a5c20b46..ef9069039f 100644 --- a/var/spack/repos/builtin/packages/r-sp/package.py +++ b/var/spack/repos/builtin/packages/r-sp/package.py @@ -16,6 +16,7 @@ class RSp(RPackage): cran = "sp" + version("1.6-0", sha256="f5977fbe80e7dee8e95d41fe0ef9d87c2c984422bb529ea5211fd38a13f9fcda") version("1.5-1", sha256="69b9eab481d389bbb736d2adcf50c180aca248c3ffc4ebda8ffe2accc5f229df") version("1.5-0", sha256="939a06adf78ec8de7a663d6ca5bba426780852b357773446b00cc298200ff81c") version("1.4-7", sha256="01946953707363b78d3eb8dcf472ea8c6ea0097094aa0ca0b756ce5fac01b1ad") diff --git a/var/spack/repos/builtin/packages/r-spacetime/package.py b/var/spack/repos/builtin/packages/r-spacetime/package.py index 411f500e82..c8e541822a 100644 --- a/var/spack/repos/builtin/packages/r-spacetime/package.py +++ b/var/spack/repos/builtin/packages/r-spacetime/package.py @@ -18,6 +18,7 @@ class RSpacetime(RPackage): cran = "spacetime" + version("1.3-0", sha256="2e9902a5c6f355f0b8e23237cf3b1553f22d7d79493bdbdb99e49104b9ef541b") version("1.2-8", sha256="4297a027ab4cff32e41cec65aa7d92af66c7a885fd2322b010b0af9a14f24c59") version("1.2-6", sha256="8fd46606ed9589ffce19368d40004890f96e8fe77f13b546e6a2f8b9ced0dd81") version("1.2-5", sha256="8f2acc3886780a902fb0476d6ab271e6640be1a1af4c7f9a21d8a2882fb72746") diff --git a/var/spack/repos/builtin/packages/r-spatial/package.py b/var/spack/repos/builtin/packages/r-spatial/package.py index 4715f7b080..e43487cc2c 100644 --- a/var/spack/repos/builtin/packages/r-spatial/package.py +++ b/var/spack/repos/builtin/packages/r-spatial/package.py @@ -13,6 +13,7 @@ class RSpatial(RPackage): cran = "spatial" + version("7.3-16", sha256="e46565a64c5ec148a77789867e5103746462a41de294539b230bad2a0e16e406") version("7.3-15", sha256="e5613be94d6f5c1f54813dadc96e4a86b3417dea28106cc90cb24dfd6c3c8cef") version("7.3-12", sha256="7639039ee7407bd088e1b253376b2cb4fcdf4cc9124d6b48e4119d5cda872d63") version("7.3-11", sha256="624448d2ac22e1798097d09fc5dc4605908a33f490b8ec971fc6ea318a445c11") diff --git a/var/spack/repos/builtin/packages/r-spatialeco/package.py b/var/spack/repos/builtin/packages/r-spatialeco/package.py index e98952c244..8b29bb5ef4 100644 --- a/var/spack/repos/builtin/packages/r-spatialeco/package.py +++ b/var/spack/repos/builtin/packages/r-spatialeco/package.py @@ -19,6 +19,7 @@ class RSpatialeco(RPackage): cran = "spatialEco" + version("2.0-0", sha256="9a2384e875ec465d1a2ccd392acc90d4469eb62babd32bb90e30b27a921153f6") version("1.3-7", sha256="38688466d9a2a56675e2fe45cf69833a163133ad3afb6f95e9ac2e8eab221b7a") version("1.3-5", sha256="d4fb211124edf828333841c44a5af01165c53d89af460144214d81e3c13983c7") version("1.3-2", sha256="9dfa427ee8b112446b582f6739a1c40a6e3ad3d050f522082a28ce47c675e57a") @@ -27,25 +28,29 @@ class RSpatialeco(RPackage): depends_on("r@3.6:", type=("build", "run")) depends_on("r@4.0:", type=("build", "run"), when="@1.3-7:") - depends_on("r-sp", type=("build", "run")) depends_on("r-sf", type=("build", "run")) - depends_on("r-raster", type=("build", "run")) + depends_on("r-spatstat-explore", type=("build", "run"), when="@2.0-0:") + depends_on("r-terra", type=("build", "run"), when="@2.0-0:") depends_on("r-spatstat-geom", type=("build", "run"), when="@1.3-7:") - depends_on("r-spatstat-core", type=("build", "run"), when="@1.3-7:") + depends_on("r-spatstat-geom@3.0-3:", type=("build", "run"), when="@2.0-0:") depends_on("r-spdep", type=("build", "run")) - depends_on("r-rgeos", type=("build", "run")) + depends_on("r-spatialpack@0.3:", type=("build", "run")) + depends_on("r-envstats", type=("build", "run")) + depends_on("r-mgcv", type=("build", "run")) + depends_on("r-yaimpute", type=("build", "run")) + depends_on("r-rms", type=("build", "run")) + depends_on("r-rann", type=("build", "run")) + depends_on("r-rcurl", type=("build", "run")) + depends_on("r-readr", type=("build", "run")) + depends_on("r-cluster", type=("build", "run")) + depends_on("r-ks", type=("build", "run"), when="@2.0-0:") depends_on("r-mass", type=("build", "run")) depends_on("r-dplyr", type=("build", "run"), when="@:1.3-2") depends_on("r-exactextractr", type=("build", "run"), when="@:1.3-2") - depends_on("r-rcurl", type=("build", "run"), when="@:1.3-2") - depends_on("r-rms", type=("build", "run"), when="@:1.3-2") - depends_on("r-yaimpute", type=("build", "run"), when="@:1.3-2") - depends_on("r-spatialpack@0.3:", type=("build", "run"), when="@:1.3-2") - depends_on("r-mgcv", type=("build", "run"), when="@:1.3-2") - depends_on("r-envstats", type=("build", "run"), when="@:1.3-2") - depends_on("r-cluster", type=("build", "run"), when="@:1.3-2") - depends_on("r-readr", type=("build", "run"), when="@:1.3-2") - depends_on("r-rann", type=("build", "run"), when="@:1.3-2") depends_on("r-maptools", type=("build", "run"), when="@:1.3-2") depends_on("r-spatstat", type=("build", "run"), when="@:1.3-5") + depends_on("r-raster", type=("build", "run"), when="@:1.3-7") + depends_on("r-rgeos", type=("build", "run"), when="@:1.3-7") + depends_on("r-sp", type=("build", "run"), when="@:1.3-7") + depends_on("r-spatstat-core", type=("build", "run"), when="@1.3-7:1.3-7") diff --git a/var/spack/repos/builtin/packages/r-spatialreg/package.py b/var/spack/repos/builtin/packages/r-spatialreg/package.py index 4a46ee3f50..525873d2e7 100644 --- a/var/spack/repos/builtin/packages/r-spatialreg/package.py +++ b/var/spack/repos/builtin/packages/r-spatialreg/package.py @@ -33,6 +33,7 @@ class RSpatialreg(RPackage): cran = "spatialreg" + version("1.2-8", sha256="150cb77ca09800d93af7de37440072d59ac7e41acb45ab42fc1c0e59edd7f9de") version("1.2-6", sha256="9b384117a31ab5fe830325b3eacbec5eb9d40bf0e9ca3c75ea15ca6b78fbd41d") version("1.2-3", sha256="09e0e65f043975d5c1d4be99ef9f29cf0790e962dcde9b7e45a7027d268fce22") version("1.2-1", sha256="4c40b6b331aa8818254633cfb80d4b9a03b2b6fac2c0104b3b99201d447ba081") @@ -50,5 +51,4 @@ class RSpatialreg(RPackage): depends_on("r-boot", type=("build", "run")) depends_on("r-learnbayes", type=("build", "run")) depends_on("r-nlme", type=("build", "run")) - depends_on("r-gmodels", type=("build", "run")) - depends_on("r-gmodels", when="@:1.2-3") + depends_on("r-gmodels", type=("build", "run"), when="@:1.2-3") diff --git a/var/spack/repos/builtin/packages/r-spatstat-data/package.py b/var/spack/repos/builtin/packages/r-spatstat-data/package.py index 4c4a2242a2..da4bef95f5 100644 --- a/var/spack/repos/builtin/packages/r-spatstat-data/package.py +++ b/var/spack/repos/builtin/packages/r-spatstat-data/package.py @@ -13,6 +13,7 @@ class RSpatstatData(RPackage): cran = "spatstat.data" + version("3.0-1", sha256="8eeb4b1de356e9cef42f58b5e0fc7ced2a476a1306e09395ba97253b22dd5300") version("3.0-0", sha256="cff9058a88489020a4a05b9576cd452f37fa9b42084873c474d06931f5187057") version("2.2-0", sha256="d3943bb4f6509d60bf68e79ce4533c5ec5261f411da6b0ef5238c124fc37c3e5") version("2.1-2", sha256="bbd118a8e6cd2c41abc764b9f2e798514070862f11e3f2080c27f72268271ae5") @@ -25,4 +26,5 @@ class RSpatstatData(RPackage): depends_on("r-spatstat-utils", type=("build", "run")) depends_on("r-spatstat-utils@2.1-0:", type=("build", "run"), when="@2.1-2:") depends_on("r-spatstat-utils@3.0-0:", type=("build", "run"), when="@3.0-0:") + depends_on("r-spatstat-utils@3.0-2:", type=("build", "run"), when="@3.0-1:") depends_on("r-matrix", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-spatstat-explore/package.py b/var/spack/repos/builtin/packages/r-spatstat-explore/package.py index 2f7a0170e1..90db8dafd3 100644 --- a/var/spack/repos/builtin/packages/r-spatstat-explore/package.py +++ b/var/spack/repos/builtin/packages/r-spatstat-explore/package.py @@ -25,14 +25,18 @@ class RSpatstatExplore(RPackage): cran = "spatstat.explore" + version("3.1-0", sha256="87ef4882652db3b834214bfc776dd7d23d931a9227de12f19722aeb1029d086e") version("3.0-3", sha256="137444a46d26d88241336feece63ed7b006a9328cfe3861d4b8ab7b4bed963a7") depends_on("r@3.5.0:", type=("build", "run")) depends_on("r-spatstat-data@3.0:", type=("build", "run")) depends_on("r-spatstat-geom@3.0:", type=("build", "run")) + depends_on("r-spatstat-geom@3.0-5:", type=("build", "run"), when="@3.1-0:") depends_on("r-spatstat-random@3.0:", type=("build", "run")) + depends_on("r-spatstat-random@3.1:", type=("build", "run"), when="@3.1-0:") depends_on("r-nlme", type=("build", "run")) depends_on("r-spatstat-utils@3.0:", type=("build", "run")) + depends_on("r-spatstat-utils@3.0-2:", type=("build", "run"), when="@3.1-0:") depends_on("r-spatstat-sparse@3.0:", type=("build", "run")) depends_on("r-goftest@1.2-2:", type=("build", "run")) depends_on("r-matrix", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-spatstat-geom/package.py b/var/spack/repos/builtin/packages/r-spatstat-geom/package.py index c5f2230a75..a8442dedb5 100644 --- a/var/spack/repos/builtin/packages/r-spatstat-geom/package.py +++ b/var/spack/repos/builtin/packages/r-spatstat-geom/package.py @@ -26,6 +26,7 @@ class RSpatstatGeom(RPackage): cran = "spatstat.geom" + version("3.1-0", sha256="184a96679babcbff4897c5a471e034eb1bb7127c6cf668e8cc2c2c74bdea47fe") version("3.0-3", sha256="6e5b56c60e774a0cdcaa5a8ffde071225f233832446a341588bd8a7840913c84") version("2.4-0", sha256="32b89a409ce87ffe901e4c8720a26cac9629f9816e163c4ad68b7aa012d69e67") version("2.3-1", sha256="f23e58d05a6d6bfab1345951fa528a9865f2a744e162fe4456161e1b0b5172c0") @@ -35,5 +36,6 @@ class RSpatstatGeom(RPackage): depends_on("r-spatstat-data@3.0:", type=("build", "run"), when="@3.0-3:") depends_on("r-spatstat-utils@2.2-0:", type=("build", "run")) depends_on("r-spatstat-utils@3.0:", type=("build", "run"), when="@3.0-3:") + depends_on("r-spatstat-utils@3.0-2:", type=("build", "run"), when="@3.1-0:") depends_on("r-deldir@1.0-2:", type=("build", "run")) depends_on("r-polyclip@1.10-0:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-spatstat-linnet/package.py b/var/spack/repos/builtin/packages/r-spatstat-linnet/package.py index 62bf7f5d26..f096d10c63 100644 --- a/var/spack/repos/builtin/packages/r-spatstat-linnet/package.py +++ b/var/spack/repos/builtin/packages/r-spatstat-linnet/package.py @@ -39,15 +39,22 @@ class RSpatstatLinnet(RPackage): cran = "spatstat.linnet" + version("3.1-0", sha256="b9b0ad66af169ca1ef3da852578d7b65521cf55f4a72c43ae5b1f2d4f47bf00c") version("2.3-2", sha256="9c78a4b680debfff0f3ae934575c30d03ded49bc9a7179475384af0ebaf13778") version("2.3-1", sha256="119ba6e3da651aa9594f70a7a35349209534215aa640c2653aeddc6aa25038c3") depends_on("r@3.5.0:", type=("build", "run")) + depends_on("r-spatstat-model@3.2-1:", type=("build", "run"), when="@3.1-0:") + depends_on("r-spatstat-explore@3.0-6:", type=("build", "run"), when="@3.1-0:") depends_on("r-spatstat-data@2.1-0:", type=("build", "run")) + depends_on("r-spatstat-data@3.0:", type=("build", "run"), when="@3.1-0:") depends_on("r-spatstat-geom@2.3-0:", type=("build", "run")) + depends_on("r-spatstat-geom@3.0-6:", type=("build", "run"), when="@3.1-0:") depends_on("r-spatstat-random@2.2-0:", type=("build", "run"), when="@2.3-2:") - depends_on("r-spatstat-core@2.3-0:", type=("build", "run")) - depends_on("r-spatstat-core@2.3-2:", type=("build", "run"), when="@2.3-2:") + depends_on("r-spatstat-random@3.1-3:", type=("build", "run"), when="@3.1-0:") depends_on("r-spatstat-utils@2.2-0:", type=("build", "run")) + depends_on("r-spatstat-utils@3.0-2:", type=("build", "run"), when="@3.1-0:") depends_on("r-matrix", type=("build", "run")) depends_on("r-spatstat-sparse@2.0:", type=("build", "run")) + depends_on("r-spatstat-sparse@3.0:", type=("build", "run"), when="@3.1-0:") + depends_on("r-spatstat-core@2.3-2:", type=("build", "run"), when="@2.3-2:2.3-2") diff --git a/var/spack/repos/builtin/packages/r-spatstat-model/package.py b/var/spack/repos/builtin/packages/r-spatstat-model/package.py new file mode 100644 index 0000000000..aee2dfd5ba --- /dev/null +++ b/var/spack/repos/builtin/packages/r-spatstat-model/package.py @@ -0,0 +1,50 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class RSpatstatModel(RPackage): + """Parametric Statistical Modelling and Inference for the 'spatstat' + Family. + + Functionality for parametric statistical modelling and inference for + spatial data, mainly spatial point patterns, in the 'spatstat' family of + packages. (Excludes analysis of spatial data on a linear network, which is + covered by the separate package 'spatstat.linnet'.) Supports parametric + modelling, formal statistical inference, and model validation. Parametric + models include Poisson point processes, Cox point processes, Neyman-Scott + cluster processes, Gibbs point processes and determinantal point processes. + Models can be fitted to data using maximum likelihood, maximum + pseudolikelihood, maximum composite likelihood and the method of minimum + contrast. Fitted models can be simulated and predicted. Formal inference + includes hypothesis tests (quadrat counting tests, Cressie-Read tests, + Clark-Evans test, Berman test, Diggle-Cressie-Loosmore-Ford test, scan + test, studentised permutation test, segregation test, ANOVA tests of fitted + models, adjusted composite likelihood ratio test, envelope tests, + Dao-Genton test, balanced independent two-stage test), confidence intervals + for parameters, and prediction intervals for point counts. Model validation + techniques include leverage, influence, partial residuals, added variable + plots, diagnostic plots, pseudoscore residual plots, model compensators and + Q-Q plots.""" + + cran = "spatstat.model" + + version("3.2-3", sha256="8ad7d2644773571a5c579ceebb98b735dccc97e9b4b109ea39b4ce3faedb14ea") + + depends_on("r@3.5.0:", type=("build", "run")) + depends_on("r-spatstat-data@3.0:", type=("build", "run")) + depends_on("r-spatstat-geom@3.0-5:", type=("build", "run")) + depends_on("r-spatstat-random@3.1-4:", type=("build", "run")) + depends_on("r-spatstat-explore@3.1-0:", type=("build", "run")) + depends_on("r-nlme", type=("build", "run")) + depends_on("r-rpart", type=("build", "run")) + depends_on("r-spatstat-utils@3.0-2:", type=("build", "run")) + depends_on("r-spatstat-sparse@3.0:", type=("build", "run")) + depends_on("r-mgcv", type=("build", "run")) + depends_on("r-matrix", type=("build", "run")) + depends_on("r-abind", type=("build", "run")) + depends_on("r-tensor", type=("build", "run")) + depends_on("r-goftest@1.2-2:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-spatstat-random/package.py b/var/spack/repos/builtin/packages/r-spatstat-random/package.py index d04a7742b9..840519b77b 100644 --- a/var/spack/repos/builtin/packages/r-spatstat-random/package.py +++ b/var/spack/repos/builtin/packages/r-spatstat-random/package.py @@ -25,13 +25,17 @@ class RSpatstatRandom(RPackage): cran = "spatstat.random" + version("3.1-4", sha256="a6cd75e187a992fd8dae535f6745e12801635a344ca51bd2fe048debea3df7d3") version("3.0-1", sha256="938c845c063b8781bf894c0a67537e7b2a7c425a4beba4a95ec9d2c37b43e5b6") version("2.2-0", sha256="45f0bbdb9dbd53b6c4151c3cdd098451cf787729717ccbb063cd1f33910e604d") depends_on("r@3.5.0:", type=("build", "run")) depends_on("r-spatstat-data@2.1-0:", type=("build", "run")) depends_on("r-spatstat-data@2.2-0.003:", type=("build", "run"), when="@3.0-1:") + depends_on("r-spatstat-data@3.0:", type=("build", "run"), when="@3.1-4:") depends_on("r-spatstat-geom@2.4-0:", type=("build", "run")) depends_on("r-spatstat-geom@2.4-0.023:", type=("build", "run"), when="@3.0-1:") + depends_on("r-spatstat-geom@3.0-5:", type=("build", "run"), when="@3.1-4:") depends_on("r-spatstat-utils@2.2-0:", type=("build", "run")) depends_on("r-spatstat-utils@2.3-1.003:", type=("build", "run"), when="@3.0-1:") + depends_on("r-spatstat-utils@3.0-2:", type=("build", "run"), when="@3.1-4:") diff --git a/var/spack/repos/builtin/packages/r-spatstat-sparse/package.py b/var/spack/repos/builtin/packages/r-spatstat-sparse/package.py index cc457bee8c..4d28b1102e 100644 --- a/var/spack/repos/builtin/packages/r-spatstat-sparse/package.py +++ b/var/spack/repos/builtin/packages/r-spatstat-sparse/package.py @@ -15,6 +15,7 @@ class RSpatstatSparse(RPackage): cran = "spatstat.sparse" + version("3.0-1", sha256="2c1cf0ddad366aa4230bd03241a1ef87ed635f53a6943fc4a6c2d371626d0d1c") version("3.0-0", sha256="99be0a3c7592760fdf1668dc0811f75ed91c400390d1ecc3d5e643255f501ad2") version("2.1-1", sha256="9a35ad69715b767b3ae60b02dce05ccf108fcccdf95bbc8f7d02557bcbde7303") version("2.1-0", sha256="0019214418668cba9f01ee5901ed7f4dba9cfee5ff62d5c7e1c914adfbea0e91") @@ -25,3 +26,4 @@ class RSpatstatSparse(RPackage): depends_on("r-tensor", type=("build", "run")) depends_on("r-spatstat-utils@2.1-0:", type=("build", "run")) depends_on("r-spatstat-utils@3.0-0:", type=("build", "run"), when="@3.0-0:") + depends_on("r-spatstat-utils@3.0-2:", type=("build", "run"), when="@3.0-1:") diff --git a/var/spack/repos/builtin/packages/r-spatstat-utils/package.py b/var/spack/repos/builtin/packages/r-spatstat-utils/package.py index e336f02633..8dec99444e 100644 --- a/var/spack/repos/builtin/packages/r-spatstat-utils/package.py +++ b/var/spack/repos/builtin/packages/r-spatstat-utils/package.py @@ -14,6 +14,7 @@ class RSpatstatUtils(RPackage): cran = "spatstat.utils" + version("3.0-2", sha256="be60cd2cf21a6b3f71ba60553c045fd87884a4e57744f60e6eb0a2d096314615") version("3.0-1", sha256="cba1c7806564fd9145ca15edf77233d6ba5609f0989f7812221f5fc1ece0b91a") version("2.3-1", sha256="5b914308df0585993084b5e95967864eea0314c98ed6af58267b64b2235dfe22") version("2.3-0", sha256="5f096ce5a201482d61e6d6859be7d40a55705ba5c6ebadd4875367ef9cb0db1a") diff --git a/var/spack/repos/builtin/packages/r-spatstat/package.py b/var/spack/repos/builtin/packages/r-spatstat/package.py index 118758ebf1..869ef46080 100644 --- a/var/spack/repos/builtin/packages/r-spatstat/package.py +++ b/var/spack/repos/builtin/packages/r-spatstat/package.py @@ -48,6 +48,7 @@ class RSpatstat(RPackage): cran = "spatstat" + version("3.0-5", sha256="b926ed55dfeb95b09fb441f44d85204277eee00e42ac258c0a08baa1ce263bb1") version("2.3-4", sha256="4ea0f8d70b926b92bf4a06521f985a0bb6d573619f5d526957c87860ccb999da") version("2.3-0", sha256="da02443722f2c7ef9d59a2799b7b8002c94cecf73f2b0d2b29280d39f49c4c06") version("1.64-1", sha256="ca3fc7d0d6b7a83fd045a7502bf03c6871fa1ab2cf411647c438fd99b4eb551a") @@ -55,19 +56,24 @@ class RSpatstat(RPackage): depends_on("r@3.3:", type=("build", "run")) depends_on("r@3.5.0:", type=("build", "run"), when="@2.3-0:") + depends_on("r-spatstat-model@3.2-3:", type=("build", "run"), when="@3.0-5:") + depends_on("r-spatstat-explore@3.1-0:", type=("build", "run"), when="@3.0-5:") depends_on("r-spatstat-data@1.4-2:", type=("build", "run")) depends_on("r-spatstat-data@2.1-0:", type=("build", "run"), when="@2.3-0:") depends_on("r-spatstat-data@2.1-2:", type=("build", "run"), when="@2.3-4:") + depends_on("r-spatstat-data@3.0-1:", type=("build", "run"), when="@3.0-5:") depends_on("r-spatstat-geom@2.3-0:", type=("build", "run"), when="@2.3-0:") depends_on("r-spatstat-geom@2.4-0:", type=("build", "run"), when="@2.3-4:") + depends_on("r-spatstat-geom@3.1-0:", type=("build", "run"), when="@3.0-5:") depends_on("r-spatstat-random@2.2-0:", type=("build", "run"), when="@2.3-4:") - depends_on("r-spatstat-core@2.3-0:", type=("build", "run"), when="@2.3-0:") - depends_on("r-spatstat-core@2.4-1:", type=("build", "run"), when="@2.3-4:") + depends_on("r-spatstat-random@3.1-4:", type=("build", "run"), when="@3.0-5:") depends_on("r-spatstat-linnet@2.3-0:", type=("build", "run"), when="@2.3-0:") depends_on("r-spatstat-linnet@2.3-2:", type=("build", "run"), when="@2.3-4:") + depends_on("r-spatstat-linnet@3.1-0:", type=("build", "run"), when="@3.0-5:") depends_on("r-spatstat-utils@1.17:", type=("build", "run")) depends_on("r-spatstat-utils@2.2-0:", type=("build", "run"), when="@2.3-0:") depends_on("r-spatstat-utils@2.3-0:", type=("build", "run"), when="@2.3-4:") + depends_on("r-spatstat-utils@3.0-2:", type=("build", "run"), when="@3.0-5:") depends_on("r-rpart", type=("build", "run"), when="@:1.64-1") depends_on("r-nlme", type=("build", "run"), when="@:1.64-1") @@ -78,3 +84,5 @@ class RSpatstat(RPackage): depends_on("r-tensor", type=("build", "run"), when="@:1.64-1") depends_on("r-polyclip@1.10:", type=("build", "run"), when="@:1.64-1") depends_on("r-goftest@1.2-2:", type=("build", "run"), when="@:1.64-1") + depends_on("r-spatstat-core@2.3-0:", type=("build", "run"), when="@2.3-0:2.3-4") + depends_on("r-spatstat-core@2.4-1:", type=("build", "run"), when="@2.3-4:2.3-4") diff --git a/var/spack/repos/builtin/packages/r-spdata/package.py b/var/spack/repos/builtin/packages/r-spdata/package.py index 7599dc72b6..56363e94cf 100644 --- a/var/spack/repos/builtin/packages/r-spdata/package.py +++ b/var/spack/repos/builtin/packages/r-spdata/package.py @@ -20,6 +20,7 @@ class RSpdata(RPackage): cran = "spData" + version("2.2.2", sha256="878a58e98b6cf259432149ecb4e5d66ada59466e1b5b0dafa60ec839e90104ed") version("2.2.0", sha256="6e9c0a72f29021a84e9049b147c9e0186f14876a4a1663ad98bbb33440ee901f") version("2.0.1", sha256="c635a3e2e5123b4cdb2e6877b9b09e3d50169e1512a53b2ba2db7fbe63b990fc") version("0.3.8", sha256="7a61268db4fdbfb004b77d36e953cbb3fdfdac7e8bb6c500628ec6c592c79ad6") @@ -27,5 +28,4 @@ class RSpdata(RPackage): depends_on("r@3.3.0:", type=("build", "run")) depends_on("r-sp", type=("build", "run"), when="@0.3.8:") - depends_on("r-raster", type=("build", "run"), when="@0.3.8:") - depends_on("r-raster", when="@:2.0.1") + depends_on("r-raster", type=("build", "run"), when="@0.3.8:2.0.1") diff --git a/var/spack/repos/builtin/packages/r-spdep/package.py b/var/spack/repos/builtin/packages/r-spdep/package.py index e13feaa894..e92c2683fc 100644 --- a/var/spack/repos/builtin/packages/r-spdep/package.py +++ b/var/spack/repos/builtin/packages/r-spdep/package.py @@ -21,6 +21,7 @@ class RSpdep(RPackage): cran = "spdep" + version("1.2-8", sha256="8d9fb4cb10d1035526ad6d9f7a11972efb0e3137dcff176d73df6ebfe96c9190") version("1.2-7", sha256="9dac594825bf2d0aa31e845bfec05d8ce206327840fe455391741dbbdf9c9eea") version("1.2-4", sha256="a9f4d5af56efb1a2bcd3e85fe4d0e8a42896a2c30a790b2487e1ebadf398a677") version("1.2-2", sha256="94f46f98be3bedde1655f8768b7ef2a977c399b5ca8977c68007e9e3b7515e23") diff --git a/var/spack/repos/builtin/packages/r-stars/package.py b/var/spack/repos/builtin/packages/r-stars/package.py index 9fd54126d6..1c9355f25c 100644 --- a/var/spack/repos/builtin/packages/r-stars/package.py +++ b/var/spack/repos/builtin/packages/r-stars/package.py @@ -15,11 +15,13 @@ class RStars(RPackage): cran = "stars" + version("0.6-1", sha256="1f78db3adab9ebbfc9d98c6cc592708d893b5d7fd7fd876af454042ef42204a7") version("0.5-6", sha256="e0413c95423635f7f7b2520813382e911257da8ace9b743da9fe3eab568a9461") depends_on("r@3.3.0:", type=("build", "run")) depends_on("r-abind", type=("build", "run")) depends_on("r-sf@1.0-8:", type=("build", "run")) + depends_on("r-sf@1.0-10:", type=("build", "run"), when="@0.6-1:") depends_on("r-classint@0.4-1:", type=("build", "run")) depends_on("r-lwgeom", type=("build", "run")) depends_on("r-rlang", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-statmod/package.py b/var/spack/repos/builtin/packages/r-statmod/package.py index 18906f2d82..68fea07426 100644 --- a/var/spack/repos/builtin/packages/r-statmod/package.py +++ b/var/spack/repos/builtin/packages/r-statmod/package.py @@ -19,6 +19,7 @@ class RStatmod(RPackage): cran = "statmod" + version("1.5.0", sha256="d61c3ef9b09d55b42e038f8d767fa483ebbdec2a9c7172b1b0ccda0ae0016ec9") version("1.4.37", sha256="90d2c8a79e0cb291f2685686436bcf4c5b9abd2efb84759a8553d1b1adb76913") version("1.4.36", sha256="14e897c83d426caca4d920d3d5bead7ae9a679276b3cb2e227f299ad189d7bc2") version("1.4.35", sha256="de5e428f81c306849af47b9ae583362855e166b1da62893734f1154cb5b3f8fe") diff --git a/var/spack/repos/builtin/packages/r-statnet-common/package.py b/var/spack/repos/builtin/packages/r-statnet-common/package.py index d48bf36c58..8e145eb7b2 100644 --- a/var/spack/repos/builtin/packages/r-statnet-common/package.py +++ b/var/spack/repos/builtin/packages/r-statnet-common/package.py @@ -14,6 +14,7 @@ class RStatnetCommon(RPackage): cran = "statnet.common" + version("4.8.0", sha256="def999130673fbcb315fecf3620a2559864f51961a828625aa5cd5fded7946f0") version("4.7.0", sha256="b69731a606b56b729b1917375efafb572b960ce5000a0fc2ec5222fd7d80a1b3") version("4.6.0", sha256="ddad51128b50d465e1d1aca3a53b452810b9ba578e96b08b8f50f5850d7bb21d") version("4.5.0", sha256="3cdb23db86f3080462f15e29bcf3e941590bc17ea719993b301199b22d6f882f") diff --git a/var/spack/repos/builtin/packages/r-stringi/package.py b/var/spack/repos/builtin/packages/r-stringi/package.py index ef2f6381f4..18d1f3bc10 100644 --- a/var/spack/repos/builtin/packages/r-stringi/package.py +++ b/var/spack/repos/builtin/packages/r-stringi/package.py @@ -20,6 +20,7 @@ class RStringi(RPackage): cran = "stringi" + version("1.7.12", sha256="efe8ac2900001f986a75db5641fbb24587a6d23de274a6a85c39dfa58921e009") version("1.7.8", sha256="538918b1cd6ed1d8a2dd5ab146ba800a088e99f93c52dcd82615b6e127478b1c") version("1.7.6", sha256="0ea3d5afec5701977ff53de9afbaceb53b00aa34f5fb641cadc1eeb7759119ec") version("1.6.2", sha256="3a151dd9b982696370ac8df3920afe462f8abbd4e41b479ff8b66cfd7b602dae") diff --git a/var/spack/repos/builtin/packages/r-stringr/package.py b/var/spack/repos/builtin/packages/r-stringr/package.py index 753daf4807..647b2b4ee9 100644 --- a/var/spack/repos/builtin/packages/r-stringr/package.py +++ b/var/spack/repos/builtin/packages/r-stringr/package.py @@ -17,6 +17,7 @@ class RStringr(RPackage): cran = "stringr" + version("1.5.0", sha256="52b159d7700a139111b4caf939e7c9c6ab3e01185181400d70a74c552826633a") version("1.4.1", sha256="ec0d8e90caa3e107f18c188ed313dea8bfd12a738011b0be09ef5362360ddcb1") version("1.4.0", sha256="87604d2d3a9ad8fd68444ce0865b59e2ffbdb548a38d6634796bbd83eeb931dd") version("1.3.1", sha256="7a8b8ea038e45978bd797419b16793f44f10c5355ad4c64b74d15276fef20343") @@ -25,6 +26,13 @@ class RStringr(RPackage): version("1.0.0", sha256="f8267db85b83c0fc8904009719c93296934775b0d6890c996ec779ec5336df4a") depends_on("r@3.1:", type=("build", "run")) + depends_on("r@3.3:", type=("build", "run"), when="@1.5.0:") + depends_on("r-lifecycle@1.0.3:", type=("build", "run"), when="@1.5.0:") + depends_on("r-cli", type=("build", "run"), when="@1.5.0:") depends_on("r-stringi@1.1.7:", type=("build", "run")) + depends_on("r-stringi@1.5.3:", type=("build", "run"), when="@1.5.0:") depends_on("r-magrittr", type=("build", "run")) + depends_on("r-vctrs", type=("build", "run"), when="@1.5.0:") + depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@1.5.0:") depends_on("r-glue@1.2.0:", type=("build", "run"), when="@1.3.0:") + depends_on("r-glue@1.6.1:", type=("build", "run"), when="@1.5.0:") diff --git a/var/spack/repos/builtin/packages/r-styler/package.py b/var/spack/repos/builtin/packages/r-styler/package.py index 0b5d19ccf3..ecc5317d5c 100644 --- a/var/spack/repos/builtin/packages/r-styler/package.py +++ b/var/spack/repos/builtin/packages/r-styler/package.py @@ -13,6 +13,7 @@ class RStyler(RPackage): cran = "styler" + version("1.9.1", sha256="c80fa3c062f007645ec820b5b087d4d5784e7797cc88d030ab59fb5823ded0bb") version("1.8.1", sha256="15505fa85f0aa2902bc8af3f00b2aeb205d41a92b77bffbd176d657753ee81e9") version("1.8.0", sha256="4f8b74c1ac158b0a4433b6008da6bb708f3c9ed1c7fb9bb5d79748858cb484c7") version("1.7.0", sha256="3e49f3ac2e65f9bdab15837a4e629db35c8fd0a15a74daa057354ba01e3022ce") @@ -36,12 +37,6 @@ class RStyler(RPackage): depends_on("r-backports@1.1.0:", type=("build", "run"), when="@:1.6.2") depends_on("r-xfun@0.1:", type=("build", "run"), when="@:1.6.2") - depends_on("r-glue", type=("build", "run"), when="@1.6.2:") - depends_on("r-glue", when="@:1.7.0") - depends_on("r-glue", when="@:1.8.0") - depends_on("r-rematch2@2.0.1:", type=("build", "run")) - depends_on("r-rematch2", when="@:1.7.0") - depends_on("r-rematch2", when="@:1.8.0") - depends_on("r-tibble@1.4.2:", type=("build", "run")) - depends_on("r-tibble", when="@:1.7.0") - depends_on("r-tibble", when="@:1.8.0") + depends_on("r-glue", type=("build", "run"), when="@1.6.2:1.7.0") + depends_on("r-rematch2@2.0.1:", type=("build", "run"), when="@:1.7.0") + depends_on("r-tibble@1.4.2:", type=("build", "run"), when="@:1.7.0") diff --git a/var/spack/repos/builtin/packages/r-survival/package.py b/var/spack/repos/builtin/packages/r-survival/package.py index 52eed61fac..2b1cbbebe1 100644 --- a/var/spack/repos/builtin/packages/r-survival/package.py +++ b/var/spack/repos/builtin/packages/r-survival/package.py @@ -15,6 +15,7 @@ class RSurvival(RPackage): cran = "survival" + version("3.5-5", sha256="1375a509554b0258e04e27baca2e073e179406e2a9a71e6d3e0c777072568476") version("3.4-0", sha256="a48e23d47265fe4d90fb5f0f9fc388906014f8063211980856985db9e89cf812") version("3.3-1", sha256="14878705cd0c7edcfead79011444aa84f680759293bde8634721c49f37cb4dc7") version("3.2-13", sha256="3fab9c0ba2c4e2b6a475207e2629a7f06a104c70093dfb768f50a7caac9a317f") diff --git a/var/spack/repos/builtin/packages/r-tclust/package.py b/var/spack/repos/builtin/packages/r-tclust/package.py index 4f177141fe..8d4c340e5b 100644 --- a/var/spack/repos/builtin/packages/r-tclust/package.py +++ b/var/spack/repos/builtin/packages/r-tclust/package.py @@ -16,6 +16,7 @@ class RTclust(RPackage): cran = "tclust" + version("1.5-4", sha256="2b55da5e351c5054c9627f57a43084518a138a1d8097e35a364db0eff63471a8") version("1.5-2", sha256="492674b30a465e5f4a22ba0ce5556ed4d8e57b29090f9b5b94ad655d064e6f8b") version("1.5-1", sha256="73328b30774bb0767d613d7f2b60b75706b19fab864c712645ea18181f1af327") version("1.4-2", sha256="95dcd07dbd16383f07f5cea8561e7f3bf314e4a7483879841103b149fc8c65d9") diff --git a/var/spack/repos/builtin/packages/r-terra/package.py b/var/spack/repos/builtin/packages/r-terra/package.py index f75af2b87a..46a91e1ea1 100644 --- a/var/spack/repos/builtin/packages/r-terra/package.py +++ b/var/spack/repos/builtin/packages/r-terra/package.py @@ -21,6 +21,7 @@ class RTerra(RPackage): cran = "terra" + version("1.7-29", sha256="3f39b052a34c9f1166a342be4c25bbdc1e2c81402edb734901d63fc6fa547ca5") version("1.6-17", sha256="db888f4220ca511332f4d011345b2b207fcc1de26d2eae473e0eeb5dfd8bbc02") version("1.5-21", sha256="091ee928ccaa6561aa9f8ee6c1c99f139dc89f1653c2a76a035cca14d404f43f") version("1.5-17", sha256="e7ac57d1712d280616a4b5a85cd915b2b3e24fe08ee044b740588d884e6be6e7") @@ -29,6 +30,7 @@ class RTerra(RPackage): depends_on("r@3.5.0:", type=("build", "run")) depends_on("r-rcpp", type=("build", "run")) + depends_on("r-rcpp@1.0-10:", type=("build", "run"), when="@1.7-29:") depends_on("gdal@2.2.3:") depends_on("geos@3.4.0:") depends_on("proj@4.9.3:") diff --git a/var/spack/repos/builtin/packages/r-testthat/package.py b/var/spack/repos/builtin/packages/r-testthat/package.py index 18dce2d522..fdd5096244 100644 --- a/var/spack/repos/builtin/packages/r-testthat/package.py +++ b/var/spack/repos/builtin/packages/r-testthat/package.py @@ -15,6 +15,7 @@ class RTestthat(RPackage): cran = "testthat" + version("3.1.7", sha256="1ad86b1739481c6c46359a6634ecc706bf513f34b26d7a62cbc719bbd4658eab") version("3.1.5", sha256="a8f56b9426206ddfc30b550c82ff2f042ebe1c2f5bfd4184aec8facac8f5b7fc") version("3.1.4", sha256="a47eec031b4e186a8bd331031371b2347063a283050eca2adbfaa37d7a6c9c09") version("3.1.2", sha256="ed41a6168ca22869b6aebe1e5865bb2f5338a7c35ca0a13cf69ac2f5c6aeb659") @@ -55,5 +56,5 @@ class RTestthat(RPackage): depends_on("r-withr@2.0.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-withr@2.3.0:", type=("build", "run"), when="@3.0.1:") depends_on("r-withr@2.4.3:", type=("build", "run"), when="@3.1.2:") - depends_on("r-crayon@1.3.4:", type=("build", "run")) - depends_on("r-crayon", when="@:3.1.4") + + depends_on("r-crayon@1.3.4:", type=("build", "run"), when="@:3.1.4") diff --git a/var/spack/repos/builtin/packages/r-th-data/package.py b/var/spack/repos/builtin/packages/r-th-data/package.py index acba8be829..f5c349dcac 100644 --- a/var/spack/repos/builtin/packages/r-th-data/package.py +++ b/var/spack/repos/builtin/packages/r-th-data/package.py @@ -13,6 +13,7 @@ class RThData(RPackage): cran = "TH.data" + version("1.1-2", sha256="47f94eb57b6fcef42efa30824c1356bf10529c4b94b0d0acdb787b434dddde73") version("1.1-1", sha256="edf3ab16b142f4c52d21fc64e41409ed138e5b3e142f2fae964b00f02d53dd7a") version("1.1-0", sha256="21b37e251da5635ae91668f64b4c6f6a7ccedbe1f01af769d30fb532af83113e") version("1.0-10", sha256="618a1c67a30536d54b1e48ba3af46a6edcd6c2abef17935b5d4ba526a43aff55") diff --git a/var/spack/repos/builtin/packages/r-tictoc/package.py b/var/spack/repos/builtin/packages/r-tictoc/package.py index 2a4afa48e4..a9d103c6b5 100644 --- a/var/spack/repos/builtin/packages/r-tictoc/package.py +++ b/var/spack/repos/builtin/packages/r-tictoc/package.py @@ -20,6 +20,7 @@ class RTictoc(RPackage): cran = "tictoc" + version("1.2", sha256="f05ea4b4142a90b0dc5d10356be3748625ef86bbd0e4399c56455654165ff20c") version("1.1", sha256="120f868ba276bda70c8edef5d6c092586cf73db0fa02eb5459d8f55350fb474d") version("1.0.1", sha256="a09a1535c417ddf6637bbbda5fca6edab6c7f7b252a64e57e99d4d0748712705") version("1.0", sha256="47da097c1822caa2d8e262381987cfa556ad901131eb96109752742526b2e2fe") diff --git a/var/spack/repos/builtin/packages/r-tidycensus/package.py b/var/spack/repos/builtin/packages/r-tidycensus/package.py index 6ae2f0760d..891a0b4a89 100644 --- a/var/spack/repos/builtin/packages/r-tidycensus/package.py +++ b/var/spack/repos/builtin/packages/r-tidycensus/package.py @@ -18,6 +18,7 @@ class RTidycensus(RPackage): cran = "tidycensus" + version("1.3.2", sha256="ca47323f19c94a3c767bef59986f4a6cb4e455b3eb21ea64f1b3d6339443c515") version("1.2.3", sha256="23bc58bb6e20e1056e40dca55a49576b5e186fdb324f00fa9d5c07fb675f32ff") version("1.2.2", sha256="5cdbb92314061c9d8d3d62f623699fa115d7faae1f4a961d55ab905538f8e7cc") version("1.2.1", sha256="b42f113c7925f8ad350f24077f6ed4d2c31d5fff45efd94639109478174a396c") diff --git a/var/spack/repos/builtin/packages/r-tidygraph/package.py b/var/spack/repos/builtin/packages/r-tidygraph/package.py index 04ed9d411f..bb45b918fb 100644 --- a/var/spack/repos/builtin/packages/r-tidygraph/package.py +++ b/var/spack/repos/builtin/packages/r-tidygraph/package.py @@ -17,6 +17,7 @@ class RTidygraph(RPackage): cran = "tidygraph" + version("1.2.3", sha256="b09c06b12583ae57edd1ec01e61a0e1b7a4b82358361fb28a6046dbece475687") version("1.2.2", sha256="d555cad6b5b56bd2edaa29950a0fd15942e972db21561bfd5cd64fd9a8936470") version("1.2.1", sha256="2fbdc2db18c5ad48c72f14d2d04111f4b0d4c434ad87c280eda3bcb98673ad36") version("1.2.0", sha256="057d6c42fc0144109f3ace7f5058cca7b2fe493c761daa991448b23f86b6129f") @@ -26,6 +27,7 @@ class RTidygraph(RPackage): depends_on("r-dplyr@0.8:", type=("build", "run")) depends_on("r-dplyr@0.8.5:", type=("build", "run"), when="@1.2.0:") depends_on("r-igraph", type=("build", "run")) + depends_on("r-igraph@1.3.0:", type=("build", "run"), when="@1.2.3:") depends_on("r-magrittr", type=("build", "run")) depends_on("r-rlang", type=("build", "run")) depends_on("r-r6", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-tidyr/package.py b/var/spack/repos/builtin/packages/r-tidyr/package.py index cb13e6e30a..037d374429 100644 --- a/var/spack/repos/builtin/packages/r-tidyr/package.py +++ b/var/spack/repos/builtin/packages/r-tidyr/package.py @@ -19,6 +19,7 @@ class RTidyr(RPackage): cran = "tidyr" + version("1.3.0", sha256="8d532b9366fdd3ec9827b51830e559a49d073425007c766025f0e603964e0a9d") version("1.2.1", sha256="6971766d3663dc75c2328ab257816f4e42d9fdc05c2d87d171b8b9b5ecce61af") version("1.2.0", sha256="8cd01da9e97827521d01ea50b9225f2705c46b7538bbf74bec6249a04c1213a8") version("1.1.4", sha256="0b0c98be98a433e15a2550f60330b31a58529a9c58bc2abd7bff6462ab761241") @@ -29,25 +30,34 @@ class RTidyr(RPackage): version("0.5.1", sha256="dbab642ac7231cbfe3e2a0d4553fb4ffb3699c6d6b432be2bb5812dfbbdbdace") depends_on("r@3.1:", type=("build", "run")) + depends_on("r@3.4.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-dplyr@0.7.0:", type=("build", "run")) depends_on("r-dplyr@0.8.2:", type=("build", "run"), when="@1.1.2:") depends_on("r-dplyr@1.0.0:", type=("build", "run"), when="@1.2.0:") - depends_on("r-ellipsis@0.1.0:", type=("build", "run"), when="@1.1.2:") + depends_on("r-dplyr@1.0.10:", type=("build", "run"), when="@1.3.0:") depends_on("r-glue", type=("build", "run")) depends_on("r-lifecycle", type=("build", "run"), when="@1.1.2:") + depends_on("r-lifecycle@1.0.3:", type=("build", "run"), when="@1.3.0:") depends_on("r-magrittr", type=("build", "run")) + depends_on("r-stringr@1.5.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-purrr", type=("build", "run")) + depends_on("r-purrr@1.0.1:", type=("build", "run"), when="@1.3.0:") depends_on("r-rlang", type=("build", "run")) + depends_on("r-rlang@1.0.4:", type=("build", "run"), when="@1.3.0:") depends_on("r-tibble", type=("build", "run")) depends_on("r-tibble@2.1.1:", type=("build", "run"), when="@1.1.2:") depends_on("r-tidyselect@0.2.5:", type=("build", "run")) depends_on("r-tidyselect@1.1.0:", type=("build", "run"), when="@1.1.2:") + depends_on("r-tidyselect@1.2.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-vctrs@0.3.0:", type=("build", "run"), when="@1.1.2:") depends_on("r-vctrs@0.3.6:", type=("build", "run"), when="@1.1.3:") depends_on("r-vctrs@0.3.7:", type=("build", "run"), when="@1.2.0:") + depends_on("r-vctrs@0.5.2:", type=("build", "run"), when="@1.3.0:") depends_on("r-cpp11@0.2.1:", type=("build", "run"), when="@1.1.2:") depends_on("r-cpp11@0.2.6:", type=("build", "run"), when="@1.1.3:") depends_on("r-cpp11@0.4.0:", type=("build", "run"), when="@1.2.0:") + depends_on("r-cli@3.4.1:", type=("build", "run"), when="@1.3.0:") depends_on("r-stringi", type=("build", "run"), when="@:0.8.3") depends_on("r-rcpp", type=("build", "run"), when="@:0.8.3") + depends_on("r-ellipsis@0.1.0:", type=("build", "run"), when="@1.1.2:1.2.1") diff --git a/var/spack/repos/builtin/packages/r-tidyselect/package.py b/var/spack/repos/builtin/packages/r-tidyselect/package.py index d963b0d9f2..584908e415 100644 --- a/var/spack/repos/builtin/packages/r-tidyselect/package.py +++ b/var/spack/repos/builtin/packages/r-tidyselect/package.py @@ -39,8 +39,7 @@ class RTidyselect(RPackage): depends_on("r-rcpp@0.12.0:", type=("build", "run"), when="@:0.2.5") depends_on("r-cli@3.3.0:", type=("build", "run"), when="@1.2.0:") - depends_on("r-ellipsis", type=("build", "run"), when="@1.1.0:") - depends_on("r-ellipsis", when="@:1.1.2") + depends_on("r-ellipsis", type=("build", "run"), when="@1.1.0:1.1.2") + depends_on("r-purrr", type=("build", "run")) - depends_on("r-purrr@0.3.2:", type=("build", "run"), when="@1.1.0:") - depends_on("r-purrr", when="@:1.1.2") + depends_on("r-purrr@0.3.2:", type=("build", "run"), when="@1.1.0:1.1.2") diff --git a/var/spack/repos/builtin/packages/r-tidyverse/package.py b/var/spack/repos/builtin/packages/r-tidyverse/package.py index 929884132d..7509e2ba4f 100644 --- a/var/spack/repos/builtin/packages/r-tidyverse/package.py +++ b/var/spack/repos/builtin/packages/r-tidyverse/package.py @@ -17,6 +17,7 @@ class RTidyverse(RPackage): cran = "tidyverse" + version("2.0.0", sha256="3d3c2d135056333247d309d1c2cc98cc0d87e2c781f4c6fbceab28d28c0728e5") version("1.3.2", sha256="37fbf8b72e49e96b1770dfb8e37f3e9e29269e8d6c96d6d3902561252ec1cf61") version("1.3.1", sha256="83cf95109d4606236274f5a8ec2693855bf75d3a1b3bc1ab4426dcc275ed6632") version("1.3.0", sha256="6d8acb81e994f9bef5e4dcf908bcea3786d108adcf982628235b6c8c80f6fe09") @@ -25,98 +26,125 @@ class RTidyverse(RPackage): depends_on("r+X", type=("build", "run")) depends_on("r@3.2:", type=("build", "run"), when="@1.3.0:") depends_on("r@3.3:", type=("build", "run"), when="@1.3.1:") + depends_on("r-conflicted@1.2.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-broom@0.4.2:", type=("build", "run")) depends_on("r-broom@0.5.2:", type=("build", "run"), when="@1.3.0:") depends_on("r-broom@0.7.6:", type=("build", "run"), when="@1.3.1:") depends_on("r-broom@0.7.10:", type=("build", "run"), when="@1.3.2:") + depends_on("r-broom@1.0.3:", type=("build", "run"), when="@2.0.0:") depends_on("r-cli@1.0.0:", type=("build", "run")) depends_on("r-cli@1.1.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-cli@2.4.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-cli@3.1.0:", type=("build", "run"), when="@1.3.2:") - depends_on("r-crayon@1.3.4:", type=("build", "run")) - depends_on("r-crayon@1.4.1:", type=("build", "run"), when="@1.3.1:") - depends_on("r-crayon@1.4.2:", type=("build", "run"), when="@1.3.2:") + depends_on("r-cli@3.6.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-dbplyr@1.1.0:", type=("build", "run")) depends_on("r-dbplyr@1.4.2:", type=("build", "run"), when="@1.3.0:") depends_on("r-dbplyr@2.1.1:", type=("build", "run"), when="@1.3.1:") + depends_on("r-dbplyr@2.3.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-dplyr@0.7.4:", type=("build", "run")) depends_on("r-dplyr@0.8.3:", type=("build", "run"), when="@1.3.0:") depends_on("r-dplyr@1.0.5:", type=("build", "run"), when="@1.3.1:") depends_on("r-dplyr@1.0.7:", type=("build", "run"), when="@1.3.2:") + depends_on("r-dplyr@1.1.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-dtplyr@1.1.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-dtplyr@1.2.0:", type=("build", "run"), when="@1.3.2:") + depends_on("r-dtplyr@1.2.2:", type=("build", "run"), when="@2.0.0:") depends_on("r-forcats@0.2.0:", type=("build", "run")) depends_on("r-forcats@0.4.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-forcats@0.5.1:", type=("build", "run"), when="@1.3.1:") + depends_on("r-forcats@1.0.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-googledrive@1.0.1:", type=("build", "run"), when="@1.3.1:") depends_on("r-googledrive@2.0.0:", type=("build", "run"), when="@1.3.2:") + depends_on("r-ragg@1.2.5:", type=("build", "run"), when="@2.0.0:") depends_on("r-googlesheets4@0.3.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-googlesheets4@1.0.0:", type=("build", "run"), when="@1.3.2:") + depends_on("r-googlesheets4@1.0.1:", type=("build", "run"), when="@2.0.0:") depends_on("r-ggplot2@2.2.1:", type=("build", "run")) depends_on("r-ggplot2@3.2.1:", type=("build", "run"), when="@1.3.0:") depends_on("r-ggplot2@3.3.3:", type=("build", "run"), when="@1.3.1:") depends_on("r-ggplot2@3.3.5:", type=("build", "run"), when="@1.3.2:") + depends_on("r-ggplot2@3.4.1:", type=("build", "run"), when="@2.0.0:") depends_on("r-haven@1.1.0:", type=("build", "run")) depends_on("r-haven@2.2.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-haven@2.3.1:", type=("build", "run"), when="@1.3.1:") depends_on("r-haven@2.4.3:", type=("build", "run"), when="@1.3.2:") + depends_on("r-haven@2.5.1:", type=("build", "run"), when="@2.0.0:") depends_on("r-hms@0.3:", type=("build", "run")) depends_on("r-hms@0.5.2:", type=("build", "run"), when="@1.3.0:") depends_on("r-hms@1.0.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-hms@1.1.1:", type=("build", "run"), when="@1.3.2:") + depends_on("r-hms@1.1.2:", type=("build", "run"), when="@2.0.0:") depends_on("r-httr@1.3.1:", type=("build", "run")) depends_on("r-httr@1.4.1:", type=("build", "run"), when="@1.3.0:") depends_on("r-httr@1.4.2:", type=("build", "run"), when="@1.3.1:") + depends_on("r-httr@1.4.4:", type=("build", "run"), when="@2.0.0:") depends_on("r-jsonlite@1.5:", type=("build", "run")) depends_on("r-jsonlite@1.6:", type=("build", "run"), when="@1.3.0:") depends_on("r-jsonlite@1.7.2:", type=("build", "run"), when="@1.3.1:") + depends_on("r-jsonlite@1.8.4:", type=("build", "run"), when="@2.0.0:") depends_on("r-lubridate@1.7.1:", type=("build", "run")) depends_on("r-lubridate@1.7.4:", type=("build", "run"), when="@1.3.0:") depends_on("r-lubridate@1.7.10:", type=("build", "run"), when="@1.3.1:") depends_on("r-lubridate@1.8.0:", type=("build", "run"), when="@1.3.2:") + depends_on("r-lubridate@1.9.2:", type=("build", "run"), when="@2.0.0:") depends_on("r-magrittr@1.5:", type=("build", "run")) depends_on("r-magrittr@2.0.1:", type=("build", "run"), when="@1.3.1:") + depends_on("r-magrittr@2.0.3:", type=("build", "run"), when="@2.0.0:") depends_on("r-modelr@0.1.1:", type=("build", "run")) depends_on("r-modelr@0.1.5:", type=("build", "run"), when="@1.3.0:") depends_on("r-modelr@0.1.8:", type=("build", "run"), when="@1.3.1:") + depends_on("r-modelr@0.1.10:", type=("build", "run"), when="@2.0.0:") depends_on("r-pillar@1.4.2:", type=("build", "run"), when="@1.3.0:") depends_on("r-pillar@1.6.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-pillar@1.6.4:", type=("build", "run"), when="@1.3.2:") + depends_on("r-pillar@1.8.1:", type=("build", "run"), when="@2.0.0:") depends_on("r-purrr@0.2.4:", type=("build", "run")) depends_on("r-purrr@0.3.3:", type=("build", "run"), when="@1.3.0:") depends_on("r-purrr@0.3.4:", type=("build", "run"), when="@1.3.1:") + depends_on("r-purrr@1.0.1:", type=("build", "run"), when="@2.0.0:") depends_on("r-readr@1.1.1:", type=("build", "run")) depends_on("r-readr@1.3.1:", type=("build", "run"), when="@1.3.0:") depends_on("r-readr@1.4.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-readr@2.1.1:", type=("build", "run"), when="@1.3.2:") + depends_on("r-readr@2.1.4:", type=("build", "run"), when="@2.0.0:") depends_on("r-readxl@1.0.0:", type=("build", "run")) depends_on("r-readxl@1.3.1:", type=("build", "run"), when="@1.3.0:") + depends_on("r-readxl@1.4.2:", type=("build", "run"), when="@2.0.0:") depends_on("r-reprex@0.1.1:", type=("build", "run")) depends_on("r-reprex@0.3.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-reprex@2.0.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-reprex@2.0.1:", type=("build", "run"), when="@1.3.2:") + depends_on("r-reprex@2.0.2:", type=("build", "run"), when="@2.0.0:") depends_on("r-rlang@0.1.4:", type=("build", "run")) depends_on("r-rlang@0.4.1:", type=("build", "run"), when="@1.3.0:") depends_on("r-rlang@0.4.10:", type=("build", "run"), when="@1.3.1:") depends_on("r-rlang@0.4.12:", type=("build", "run"), when="@1.3.2:") + depends_on("r-rlang@1.0.6:", type=("build", "run"), when="@2.0.0:") depends_on("r-rstudioapi@0.7:", type=("build", "run")) depends_on("r-rstudioapi@0.10:", type=("build", "run"), when="@1.3.0:") depends_on("r-rstudioapi@0.13:", type=("build", "run"), when="@1.3.1:") + depends_on("r-rstudioapi@0.14:", type=("build", "run"), when="@2.0.0:") depends_on("r-rvest@0.3.2:", type=("build", "run")) depends_on("r-rvest@0.3.5:", type=("build", "run"), when="@1.3.0:") depends_on("r-rvest@1.0.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-rvest@1.0.2:", type=("build", "run"), when="@1.3.2:") + depends_on("r-rvest@1.0.3:", type=("build", "run"), when="@2.0.0:") depends_on("r-stringr@1.2.0:", type=("build", "run")) depends_on("r-stringr@1.4.0:", type=("build", "run"), when="@1.3.0:") + depends_on("r-stringr@1.5.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-tibble@1.3.4:", type=("build", "run")) depends_on("r-tibble@2.1.3:", type=("build", "run"), when="@1.3.0:") depends_on("r-tibble@3.1.0:", type=("build", "run"), when="@1.3.1:") depends_on("r-tibble@3.1.6:", type=("build", "run"), when="@1.3.2:") + depends_on("r-tibble@3.1.8:", type=("build", "run"), when="@2.0.0:") depends_on("r-tidyr@0.7.2:", type=("build", "run")) depends_on("r-tidyr@1.0.0:", type=("build", "run"), when="@1.3.0:") depends_on("r-tidyr@1.1.3:", type=("build", "run"), when="@1.3.1:") depends_on("r-tidyr@1.1.4:", type=("build", "run"), when="@1.3.2:") + depends_on("r-tidyr@1.3.0:", type=("build", "run"), when="@2.0.0:") depends_on("r-xml2@1.1.1:", type=("build", "run")) depends_on("r-xml2@1.2.2:", type=("build", "run"), when="@1.3.0:") depends_on("r-xml2@1.3.2:", type=("build", "run"), when="@1.3.1:") depends_on("r-xml2@1.3.3:", type=("build", "run"), when="@1.3.2:") + depends_on("r-crayon@1.4.1:", type=("build", "run"), when="@1.3.1:1.3.2") + depends_on("r-crayon@1.4.2:", type=("build", "run"), when="@1.3.2:1.3.2") diff --git a/var/spack/repos/builtin/packages/r-timechange/package.py b/var/spack/repos/builtin/packages/r-timechange/package.py index 54cfdb5fe5..98c59ae22e 100644 --- a/var/spack/repos/builtin/packages/r-timechange/package.py +++ b/var/spack/repos/builtin/packages/r-timechange/package.py @@ -19,6 +19,7 @@ class RTimechange(RPackage): cran = "timechange" + version("0.2.0", sha256="3d602008052123daef94a5c3f5154c5461b4ec0432ab70c37273d7ddd252f7f1") version("0.1.1", sha256="8503919d233d7d7b81fe47692f0f2d6742ff4cae7320a5522bf98f077f5d7f70") depends_on("r@3.3:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-tinytex/package.py b/var/spack/repos/builtin/packages/r-tinytex/package.py index 43e1d14b51..a841b3c156 100644 --- a/var/spack/repos/builtin/packages/r-tinytex/package.py +++ b/var/spack/repos/builtin/packages/r-tinytex/package.py @@ -18,6 +18,7 @@ class RTinytex(RPackage): cran = "tinytex" + version("0.45", sha256="0c2fbbd09e80af80ca6b685bf0653f070da97b85413d39af966aba28f376e92c") version("0.42", sha256="205f7a1978118aa38b6d9f7d3e1667c635da262b43967d1a879520284c2e22b1") version("0.39", sha256="f22e9b77c200fe44cc073b759c2b2bc3310a2382d897282548aa02dcbabc25ed") version("0.37", sha256="2f4f330711fd6cd96927c18f2f649487b8a83a06ed04b5928a0067163e7948d9") diff --git a/var/spack/repos/builtin/packages/r-triebeard/package.py b/var/spack/repos/builtin/packages/r-triebeard/package.py index ac16900fb5..eae6aeff17 100644 --- a/var/spack/repos/builtin/packages/r-triebeard/package.py +++ b/var/spack/repos/builtin/packages/r-triebeard/package.py @@ -16,6 +16,7 @@ class RTriebeard(RPackage): cran = "triebeard" + version("0.4.1", sha256="192f2fef6341e43bd56ef4f9841e813e07be990f4ffcf38c5606259630efe0f7") version("0.3.0", sha256="bf1dd6209cea1aab24e21a85375ca473ad11c2eff400d65c6202c0fb4ef91ec3") depends_on("r-rcpp", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-truncnorm/package.py b/var/spack/repos/builtin/packages/r-truncnorm/package.py index f7f3fdb41b..c738954439 100644 --- a/var/spack/repos/builtin/packages/r-truncnorm/package.py +++ b/var/spack/repos/builtin/packages/r-truncnorm/package.py @@ -14,6 +14,7 @@ class RTruncnorm(RPackage): cran = "truncnorm" + version("1.0-9", sha256="5156acc4d63243bf95326d6285b0ba3cdf710697d67c233a12ae56f3d87ec708") version("1.0-8", sha256="49564e8d87063cf9610201fbc833859ed01935cc0581b9e21c42a0d21a47c87e") version("1.0.0", sha256="dc1b018cb6d9ad5beb2d9e2f3ebe56c3f69d7a98fc5a1d963dd7933d209ac272") diff --git a/var/spack/repos/builtin/packages/r-tseries/package.py b/var/spack/repos/builtin/packages/r-tseries/package.py index ffaaaf4741..1ecfe41cdd 100644 --- a/var/spack/repos/builtin/packages/r-tseries/package.py +++ b/var/spack/repos/builtin/packages/r-tseries/package.py @@ -11,6 +11,7 @@ class RTseries(RPackage): cran = "tseries" + version("0.10-53", sha256="ec388ee6d022752bbebbecbf22d793d31f3734982e3f2e3ffd8dde14bffcca56") version("0.10-52", sha256="9399c8dbedb3b44b8b3b854f6e8867e0a14f3727a7aa66ec9c6eff069ead8f45") version("0.10-51", sha256="a55f20704883710ab58ea479e20cf0f263c50d54282f693793cda4af664c207f") version("0.10-49", sha256="45bf26d8f41f12a72954bbe5fb6f4da6cc4ef29ee075c49fe7cc8456926c14ba") diff --git a/var/spack/repos/builtin/packages/r-tweenr/package.py b/var/spack/repos/builtin/packages/r-tweenr/package.py index 1200edfb99..9636e28c9a 100644 --- a/var/spack/repos/builtin/packages/r-tweenr/package.py +++ b/var/spack/repos/builtin/packages/r-tweenr/package.py @@ -27,5 +27,4 @@ class RTweenr(RPackage): depends_on("r-rlang", type=("build", "run")) depends_on("r-cpp11@0.4.2:", type=("build", "run"), when="@2.0.2:") depends_on("r-vctrs", type=("build", "run"), when="@2.0.2:") - depends_on("r-rcpp@0.12.3:", type=("build", "run")) - depends_on("r-rcpp", when="@:1.0.2") + depends_on("r-rcpp@0.12.3:", type=("build", "run"), when="@:1.0.2") diff --git a/var/spack/repos/builtin/packages/r-units/package.py b/var/spack/repos/builtin/packages/r-units/package.py index ce352e9a95..b43dbc954a 100644 --- a/var/spack/repos/builtin/packages/r-units/package.py +++ b/var/spack/repos/builtin/packages/r-units/package.py @@ -20,6 +20,7 @@ class RUnits(RPackage): cran = "units" + version("0.8-1", sha256="d3e1ba246b4c97205bc3da3cf45d6b5bd5c196b8d421b84b4e94b2090985cd9a") version("0.8-0", sha256="9c46fe138e8c1c3d3a51268776412f02d09673656516148cccb71b1071beb21a") version("0.7-2", sha256="b90be023431100632b3081747af9e743e615452b4ad38810991f7b024b7040eb") version("0.6-7", sha256="3f73a62bafdbe0f93bbf00ac4b1adb8f919dd04649ff8f1d007f2986e35cb7e5") diff --git a/var/spack/repos/builtin/packages/r-uwot/package.py b/var/spack/repos/builtin/packages/r-uwot/package.py index 24b9aaaf68..8b1eadcffb 100644 --- a/var/spack/repos/builtin/packages/r-uwot/package.py +++ b/var/spack/repos/builtin/packages/r-uwot/package.py @@ -38,5 +38,4 @@ class RUwot(RPackage): depends_on("r-rcppparallel", type=("build", "run"), when="@:0.1.3") depends_on("gmake", type="build", when="@:0.1.3") - depends_on("r-rspectra", type=("build", "run")) - depends_on("r-rspectra", when="@:0.1.11") + depends_on("r-rspectra", type=("build", "run"), when="@:0.1.11") diff --git a/var/spack/repos/builtin/packages/r-v8/package.py b/var/spack/repos/builtin/packages/r-v8/package.py index c19da6bd28..81dbfba559 100644 --- a/var/spack/repos/builtin/packages/r-v8/package.py +++ b/var/spack/repos/builtin/packages/r-v8/package.py @@ -15,6 +15,7 @@ class RV8(RPackage): cran = "V8" + version("4.3.0", sha256="7e395c4faed0d2a9d647820269d2d374953fc67c6108d57d63e93ec570dbe0d0") version("4.2.2", sha256="50653527198637a37c010052f394839f50a3c643975aac1d04e42d36f8e5313b") version("4.2.1", sha256="99881af4798d11da0adccd8e4e1aa5dc4adccf5e3572724c14f6f90c2b8c3ff0") version("4.2.0", sha256="6c62fdc974cc30fa975cad4ccb1e3796112fc2490a807f6e3d7878c3a5544743") diff --git a/var/spack/repos/builtin/packages/r-vcd/package.py b/var/spack/repos/builtin/packages/r-vcd/package.py index d3eed25a0a..0301c4129d 100644 --- a/var/spack/repos/builtin/packages/r-vcd/package.py +++ b/var/spack/repos/builtin/packages/r-vcd/package.py @@ -18,6 +18,7 @@ class RVcd(RPackage): cran = "vcd" + version("1.4-11", sha256="7a54e855689e1429d46e0d4d7a956f96b0ad2fd0c7084fa023902c55849e0932") version("1.4-10", sha256="7188192afa289350cc1b89790f4f8f5a5114c1c88bee7715a0c8f5347aa0b35b") version("1.4-9", sha256="a5b420ad5ff1a27fa92f98099a8b43f2dded7e5f60297b3e4d947ad6f039568f") version("1.4-8", sha256="236fcb183152f6e9d131eeb3931d5a064a5ff79be91e4533df9148fd2ff41e0c") @@ -26,6 +27,7 @@ class RVcd(RPackage): version("1.4-1", sha256="af4c77522efef28271afab7d90679824826132c6bc61abe17df763ed1fc24994") depends_on("r@2.4.0:", type=("build", "run")) + depends_on("r@2.10:", type=("build", "run"), when="@1.4-11:") depends_on("r-mass", type=("build", "run")) depends_on("r-colorspace", type=("build", "run")) depends_on("r-lmtest", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-vcfr/package.py b/var/spack/repos/builtin/packages/r-vcfr/package.py index e7c17670d1..9bed9c8323 100644 --- a/var/spack/repos/builtin/packages/r-vcfr/package.py +++ b/var/spack/repos/builtin/packages/r-vcfr/package.py @@ -22,6 +22,7 @@ class RVcfr(RPackage): maintainers("dorton21") + version("1.14.0", sha256="8576dbd2e5a707dabc20acbbea3fe18b6a783910e622423ac203609a386204cb") version("1.13.0", sha256="743ce845732ada638f0f8a2cd789cd06aa25d818fec87c8bdb998f7c77089ebc") version("1.12.0", sha256="dd87ff010365de363864a44ca49887c0fdad0dd18d0d9c66e44e39c2d4581d52") diff --git a/var/spack/repos/builtin/packages/r-vctrs/package.py b/var/spack/repos/builtin/packages/r-vctrs/package.py index ce13a7355b..9f50b1c641 100644 --- a/var/spack/repos/builtin/packages/r-vctrs/package.py +++ b/var/spack/repos/builtin/packages/r-vctrs/package.py @@ -16,6 +16,7 @@ class RVctrs(RPackage): cran = "vctrs" + version("0.6.2", sha256="feecabe11f6c55e04377d36fa59842187f0a6fe52aaf867c08289a948781ee84") version("0.5.0", sha256="7c372e13c39ddace9c9bb9f33238de6dd2cd0f37dcc7054ba6435d271e5df686") version("0.4.2", sha256="5414d1d6977163b4e85efa40d6facdd98089d6ffd460daaba729d4200942d815") version("0.4.1", sha256="9676881e009aa1217818f326338e8b35dd9a9438918f8b1ac249f4c8afe460dd") @@ -26,6 +27,7 @@ class RVctrs(RPackage): depends_on("r@3.2:", type=("build", "run")) depends_on("r@3.3:", type=("build", "run"), when="@0.3.5:") + depends_on("r@3.5.0:", type=("build", "run"), when="@0.6.2:") depends_on("r-cli@3.2.0:", type=("build", "run"), when="@0.4.1:") depends_on("r-cli@3.4.0:", type=("build", "run"), when="@0.5.0:") depends_on("r-glue", type=("build", "run")) @@ -36,6 +38,7 @@ class RVctrs(RPackage): depends_on("r-rlang@1.0.0:", type=("build", "run"), when="@0.4.1:") depends_on("r-rlang@1.0.2:", type=("build", "run"), when="@0.4.2:") depends_on("r-rlang@1.0.6:", type=("build", "run"), when="@0.5.0:") + depends_on("r-rlang@1.1.0:", type=("build", "run"), when="@0.6.2:") depends_on("r-digest", type=("build", "run"), when="@:0.3.6") depends_on("r-zeallot", type=("build", "run"), when="@:0.2.0") diff --git a/var/spack/repos/builtin/packages/r-vgam/package.py b/var/spack/repos/builtin/packages/r-vgam/package.py index 171ffa12f9..b1e3a43d25 100644 --- a/var/spack/repos/builtin/packages/r-vgam/package.py +++ b/var/spack/repos/builtin/packages/r-vgam/package.py @@ -28,6 +28,7 @@ class RVgam(RPackage): cran = "VGAM" + version("1.1-8", sha256="d4c0f1d4e356d88ab6f39c05076ff97ebef6d20b7fbf1b0fa31d40c73d0ad1cc") version("1.1-7", sha256="a4c52d392332477eac557c84b732f3c03dd48f75db3884e23c71cf99d991757e") version("1.1-6", sha256="446a61bac5dd4794e05d20c2f3901eec54afac52c6e23ce2787c5575170dd417") version("1.1-5", sha256="30190b150f3e5478137d288a45f575b2654ad7c29254b0a1fe5c954ee010a1bb") @@ -43,3 +44,4 @@ class RVgam(RPackage): depends_on("r@3.1.0:", type=("build", "run"), when="@1.0-2:") depends_on("r@3.4.0:", type=("build", "run"), when="@1.0-4:") depends_on("r@3.5.0:", type=("build", "run"), when="@1.1-5:") + depends_on("r@4.0.0:", type=("build", "run"), when="@1.1-8:") diff --git a/var/spack/repos/builtin/packages/r-vioplot/package.py b/var/spack/repos/builtin/packages/r-vioplot/package.py index 97d0a66160..5e1b59032e 100644 --- a/var/spack/repos/builtin/packages/r-vioplot/package.py +++ b/var/spack/repos/builtin/packages/r-vioplot/package.py @@ -14,6 +14,7 @@ class RVioplot(RPackage): cran = "vioplot" + version("0.4.0", sha256="5729b483e3a4f7c81d2cc22c8bc5211b64e289734e9da5b5696c4974067867b5") version("0.3.7", sha256="06475d9a47644245ec91598e9aaef7db1c393802d9fc314420ac5139ae56adb6") version("0.3.5", sha256="1b64833c1bd6851036cf1c400c7d0036a047e71def94a399c897263b4b303e2a") version("0.3.2", sha256="7b51d0876903a3c315744cb051ac61920eeaa1f0694814959edfae43ce956e8e") diff --git a/var/spack/repos/builtin/packages/r-vroom/package.py b/var/spack/repos/builtin/packages/r-vroom/package.py index 869c88cbd5..29afcfdabe 100644 --- a/var/spack/repos/builtin/packages/r-vroom/package.py +++ b/var/spack/repos/builtin/packages/r-vroom/package.py @@ -17,6 +17,7 @@ class RVroom(RPackage): cran = "vroom" + version("1.6.1", sha256="eb0e33d53212f9c7e8b38d632c98bd5015365cc13f55dadb15ff0d404b31807c") version("1.6.0", sha256="a718ccdf916442693af5392944774d8aec5ce48f417871f9de84dd1089d26ca6") version("1.5.7", sha256="d087cb148f71c222fc89199d03df2502689149873414a6d89c2f006d3a109fde") version("1.5.5", sha256="1d45688c08f162a3300eda532d9e87d144f4bc686769a521bf9a12e3d3b465fe") @@ -30,6 +31,7 @@ class RVroom(RPackage): depends_on("r-glue", type=("build", "run")) depends_on("r-hms", type=("build", "run")) depends_on("r-lifecycle", type=("build", "run")) + depends_on("r-lifecycle@1.0.3:", type=("build", "run"), when="@1.6.1:") depends_on("r-rlang@0.4.2:", type=("build", "run")) depends_on("r-tibble@2.0.0:", type=("build", "run")) depends_on("r-tzdb@0.1.1:", type=("build", "run")) diff --git a/var/spack/repos/builtin/packages/r-wgcna/package.py b/var/spack/repos/builtin/packages/r-wgcna/package.py index 2510b25349..bd849354fd 100644 --- a/var/spack/repos/builtin/packages/r-wgcna/package.py +++ b/var/spack/repos/builtin/packages/r-wgcna/package.py @@ -20,6 +20,7 @@ class RWgcna(RPackage): cran = "WGCNA" + version("1.72-1", sha256="1dbf82761ef3e76464b18fc9f698ad0f971aafecabf66ca937b950930bd57fdc") version("1.71", sha256="21f5349e888ea76241912600ee5c35a0d2fd50180568b9b08b2b597f099bf708") version("1.70-3", sha256="b9843b839728183af6b746f239e9519d438b294613362b556002acdb8522cbd4") version("1.69", sha256="2ea152d45b2d4f0e40b4b9f7b5ea8a96e230f7744ece8be27bdba96cf39d5008") diff --git a/var/spack/repos/builtin/packages/r-whisker/package.py b/var/spack/repos/builtin/packages/r-whisker/package.py index a565ea00b8..0bd701b877 100644 --- a/var/spack/repos/builtin/packages/r-whisker/package.py +++ b/var/spack/repos/builtin/packages/r-whisker/package.py @@ -13,5 +13,6 @@ class RWhisker(RPackage): cran = "whisker" + version("0.4.1", sha256="bf5151494508032f68ac41e211bda80da9087c65c7068ffdd12f16669bf1f2bc") version("0.4", sha256="7a86595be4f1029ec5d7152472d11b16175737e2777134e296ae97341bf8fba8") version("0.3-2", sha256="484836510fcf123a66ddd13cdc8f32eb98e814cad82ed30c0294f55742b08c7c") diff --git a/var/spack/repos/builtin/packages/r-wk/package.py b/var/spack/repos/builtin/packages/r-wk/package.py index 8e0de19b01..1c531e9c64 100644 --- a/var/spack/repos/builtin/packages/r-wk/package.py +++ b/var/spack/repos/builtin/packages/r-wk/package.py @@ -18,10 +18,10 @@ class RWk(RPackage): cran = "wk" + version("0.7.2", sha256="6f8b72f54e2efea62fda8bc897124b43a39b81cffa9569103d06d95f946eab2f") version("0.7.0", sha256="e24327d38f2ff2d502c67c60eba3b4e44079a64ed8b805df64f231dc4712a2de") version("0.6.0", sha256="af2c2837056a6dcc9f64d5ace29601d6d668c95769f855ca0329648d7326eaf5") version("0.4.1", sha256="daa7351af0bd657740972016906c686f335b8fa922ba10250e5000ddc2bb8950") depends_on("r@2.10:", type=("build", "run"), when="@0.7.0:") - depends_on("r-cpp11", type=("build", "run")) - depends_on("r-cpp11", when="@:0.6.0") + depends_on("r-cpp11", type=("build", "run"), when="@:0.6.0") diff --git a/var/spack/repos/builtin/packages/r-xfun/package.py b/var/spack/repos/builtin/packages/r-xfun/package.py index 46a7a4c6c5..b49015a518 100644 --- a/var/spack/repos/builtin/packages/r-xfun/package.py +++ b/var/spack/repos/builtin/packages/r-xfun/package.py @@ -14,6 +14,7 @@ class RXfun(RPackage): cran = "xfun" + version("0.39", sha256="d0ecaabb243dd3496da6029932fcdd4772914843de7ffd0b78a172efde1356c9") version("0.34", sha256="50e76c1febb988c044e44fb78e1abc1ba681173c9ff3c336f4c0ad71e6a2853d") version("0.33", sha256="45fbc2d252867b69bbde64d4a4e3d2e049ad1d3a84984e9cfb242d8d1f41ee6c") version("0.31", sha256="d169f3e682dab0c3f2ca381f2dba9b7014a5e2ca3d6863dbae3d1bca699ef235") diff --git a/var/spack/repos/builtin/packages/r-xgboost/package.py b/var/spack/repos/builtin/packages/r-xgboost/package.py index 25d0d7db76..d372d78871 100644 --- a/var/spack/repos/builtin/packages/r-xgboost/package.py +++ b/var/spack/repos/builtin/packages/r-xgboost/package.py @@ -21,6 +21,7 @@ class RXgboost(RPackage): cran = "xgboost" + version("1.7.5.1", sha256="4ec0833f206f84e5983e9f373ea64903bec488f751fba6f75a6f4702b1c965bc") version("1.6.0.1", sha256="9ae99a20997e1b02ffd21cabada2a55e53f5754746238ee900de5eb6cd964ebd") version("1.5.0.2", sha256="4750b9a289d8cb685291939eed7c493bb42c5cc154ef98e13100abb1727eab13") version("1.3.2.1", sha256="2ff462b81ad51a4810bd7860cb014b9b88831a8b1d45774249a808547147f884") diff --git a/var/spack/repos/builtin/packages/r-xlconnect/package.py b/var/spack/repos/builtin/packages/r-xlconnect/package.py index ef8819458c..8dc36f2a90 100644 --- a/var/spack/repos/builtin/packages/r-xlconnect/package.py +++ b/var/spack/repos/builtin/packages/r-xlconnect/package.py @@ -14,6 +14,7 @@ class RXlconnect(RPackage): cran = "XLConnect" + version("1.0.7", sha256="821dba231c3c3147455e7525119b51e5dc001984c638b7ce519d0974b32de677") version("1.0.6", sha256="b233b9f74d1464b78d5dd28bd8a1fa46ca6254518da2d3bda3c978a3f4aaa4f9") version("1.0.5", sha256="975c2ef57f28ccfac79ae5d285b7e82e60791fb121052616c10bc52e2bca16ad") version("1.0.1", sha256="927aa34a3c81c12bf156e55edca9e2f5186c31435cce23feda4b906d049d6e39") diff --git a/var/spack/repos/builtin/packages/r-xml/package.py b/var/spack/repos/builtin/packages/r-xml/package.py index 6a1d8abb8a..b6a0441fb5 100644 --- a/var/spack/repos/builtin/packages/r-xml/package.py +++ b/var/spack/repos/builtin/packages/r-xml/package.py @@ -15,6 +15,7 @@ class RXml(RPackage): cran = "XML" + version("3.99-0.14", sha256="2cb6a61a4d8d89e311994f47df09913d4ce5281317d42c78af4aafd75a31f1f9") version("3.99-0.12", sha256="cb209425c886bf405dc03fda8854e819bd9b2d4e4b031c71c5120b7302a36d14") version("3.99-0.11", sha256="c523bd8e6419d44a477038396e9c3b3ec70a67ed85a0c9bfa8b9445f91647fc8") version("3.99-0.9", sha256="9c15dedf3157efc59e0db31506631dfe770a4d397ce52f972434bed60e206a09") diff --git a/var/spack/repos/builtin/packages/r-xts/package.py b/var/spack/repos/builtin/packages/r-xts/package.py index 431b3ba385..67e1e6527a 100644 --- a/var/spack/repos/builtin/packages/r-xts/package.py +++ b/var/spack/repos/builtin/packages/r-xts/package.py @@ -16,6 +16,7 @@ class RXts(RPackage): cran = "xts" + version("0.13.1", sha256="2c3907c6d0162e48d1898647105bbb32cfe0cb005788481a64ee675a941d825d") version("0.13.0", sha256="188e4d1d8c3ec56a544dfb9da002e8aac80b9303d0a5a1f62ff0e960aeef9674") version("0.12.2", sha256="9c287ceaeb758ff4c9596be6a688db5683d50b45e7610e6d068891ca10dca743") version("0.12.1", sha256="d680584af946fc30be0b2046e838cff7b3a65e00df1eadba325ca5e96f3dca2c") diff --git a/var/spack/repos/builtin/packages/r-yaml/package.py b/var/spack/repos/builtin/packages/r-yaml/package.py index 60450c5410..8de330f749 100644 --- a/var/spack/repos/builtin/packages/r-yaml/package.py +++ b/var/spack/repos/builtin/packages/r-yaml/package.py @@ -14,6 +14,7 @@ class RYaml(RPackage): cran = "yaml" + version("2.3.7", sha256="d20cb219e0f9c48aba02f132f81cfa9ecda5e22c925e36726840218ed56680ab") version("2.3.6", sha256="5dd19d8d6654ef2e4ccd6216ce8e96ca5185ae6143f95194955f6908a6e1ba26") version("2.3.5", sha256="3edf6c0554a0e184a25e8bec5721a2e66b4ab0dceb3737428e22705e52eb5140") version("2.2.2", sha256="a5dc6aba2719eb4422bdd7d3a7b2223bbb00e4470fa234d8c5b3a6835d99f730") diff --git a/var/spack/repos/builtin/packages/r-zip/package.py b/var/spack/repos/builtin/packages/r-zip/package.py index 91027190ea..d35684783d 100644 --- a/var/spack/repos/builtin/packages/r-zip/package.py +++ b/var/spack/repos/builtin/packages/r-zip/package.py @@ -15,6 +15,7 @@ class RZip(RPackage): cran = "zip" + version("2.3.0", sha256="33eba844922af9981732ee6ec1582d46cf04c562344f09a0f0f14a22c6f74543") version("2.2.2", sha256="e16cde23bb283efbe9b6bce19575c716c371d09033b42514471ccb444c0a8ea4") version("2.2.1", sha256="14873d0874813139411c120d8b209af71e4e087871eeb963f235411eb1061422") version("2.2.0", sha256="9f95987c964039834f770ecda2d5f7e3d3a9de553c89db2a5926c4219bf4b9d8") diff --git a/var/spack/repos/builtin/packages/r-zoo/package.py b/var/spack/repos/builtin/packages/r-zoo/package.py index a12611c716..7a81e11e77 100644 --- a/var/spack/repos/builtin/packages/r-zoo/package.py +++ b/var/spack/repos/builtin/packages/r-zoo/package.py @@ -18,6 +18,7 @@ class RZoo(RPackage): cran = "zoo" + version("1.8-12", sha256="e6c3862668f9e3422bced3b6fba485c76a1e91b48f5d6153822d6a61863b2fb8") version("1.8-11", sha256="848e50f875afe06f13422e32160082b0725159a8be98234ef358480e57029ca5") version("1.8-10", sha256="c9a282d8004c22651c4fa1d657d3cad946c5ec55c4dc068569d860ee9b31ed47") version("1.8-9", sha256="b7be259067a8b9d4a8f5d387e0946a5ba1eb43474baa67ccf4f8bf4b15f772a3") |