diff options
| -rw-r--r-- | var/spack/repos/builtin/packages/trinity/2.15.1.patch | 11 | ||||
| -rw-r--r-- | var/spack/repos/builtin/packages/trinity/package.py | 7 |
2 files changed, 18 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/trinity/2.15.1.patch b/var/spack/repos/builtin/packages/trinity/2.15.1.patch new file mode 100644 index 0000000000..b93de86c90 --- /dev/null +++ b/var/spack/repos/builtin/packages/trinity/2.15.1.patch @@ -0,0 +1,11 @@ +--- a/trinity-plugins/bamsifter/sift_bam_max_cov.cpp 2023-02-05 18:46:28.000000000 +0000 ++++ b/trinity-plugins/bamsifter/sift_bam_max_cov.cpp 2023-04-20 22:25:49.785300259 +0000 +@@ -2,7 +2,7 @@ + #include <stdio.h> + // #include <unistd.h> + #include <stdlib.h> +-#include <string.h> ++#include <string> + #include <cstring> + #include <getopt.h> + #include <stdint.h> diff --git a/var/spack/repos/builtin/packages/trinity/package.py b/var/spack/repos/builtin/packages/trinity/package.py index 1c2bf6f03c..a74fcc774a 100644 --- a/var/spack/repos/builtin/packages/trinity/package.py +++ b/var/spack/repos/builtin/packages/trinity/package.py @@ -23,6 +23,11 @@ class Trinity(MakefilePackage): url = "https://github.com/trinityrnaseq/trinityrnaseq/archive/Trinity-v2.6.6.tar.gz" version( + "2.15.1.FULL", + sha256="ba37e5f696d3d54e8749c4ba439901a3e97e14a4314a5229d7a069ad7b1ee580", + url="https://github.com/trinityrnaseq/trinityrnaseq/releases/download/Trinity-v2.15.1/trinityrnaseq-v2.15.1.FULL.tar.gz", + ) + version( "2.15.0.FULL", sha256="d67de43e535e1173be75de98dcfbdab0bf67f814c9e465a44dfd056cefeb529d", url="https://github.com/trinityrnaseq/trinityrnaseq/releases/download/Trinity-v2.15.0/trinityrnaseq-v2.15.0.FULL.tar.gz", @@ -87,6 +92,8 @@ class Trinity(MakefilePackage): depends_on("r-argparse", type="run") depends_on("r-sm", type="run") + patch("2.15.1.patch", when="@2.15.1.FULL") + def build(self, spec, prefix): make() make("trinity_essentials") |