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| -rw-r--r-- | var/spack/repos/builtin/packages/ea-utils/package.py | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/ea-utils/package.py b/var/spack/repos/builtin/packages/ea-utils/package.py new file mode 100644 index 0000000000..296b05eaf2 --- /dev/null +++ b/var/spack/repos/builtin/packages/ea-utils/package.py @@ -0,0 +1,51 @@ +############################################################################## +# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/llnl/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class EaUtils(MakefilePackage): + """Command-line tools for processing biological sequencing data. Barcode + demultiplexing, adapter trimming, etc. Primarily written to support an + Illumina based pipeline - but should work with any FASTQs.""" + + homepage = "http://expressionanalysis.github.io/ea-utils/" + url = "https://github.com/ExpressionAnalysis/ea-utils/archive/1.04.807.tar.gz" + + version('1.04.807', '5972b9f712920603b7527f46c0063a09') + + depends_on('subversion') + depends_on('zlib') + depends_on('gsl') + depends_on('bamtools') + # perl module required for make check, which is included in the default + # target + depends_on('perl', type='build') + + build_directory = 'clipper' + + def edit(self, spec, prefix): + with working_dir('clipper'): + makefile = FileFilter('Makefile') + makefile.filter('/usr', prefix) |