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| -rw-r--r-- | var/spack/repos/builtin/packages/py-niworkflows/package.py | 63 |
1 files changed, 63 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-niworkflows/package.py b/var/spack/repos/builtin/packages/py-niworkflows/package.py new file mode 100644 index 0000000000..e923c77b4d --- /dev/null +++ b/var/spack/repos/builtin/packages/py-niworkflows/package.py @@ -0,0 +1,63 @@ +# Copyright 2013-2021 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyNiworkflows(PythonPackage): + """Common workflows for MRI (anatomical, functional, diffusion, etc)""" + + homepage = "https://github.com/nipreps/niworkflows" + pypi = "niworkflows/niworkflows-1.4.0.tar.gz" + + version('1.4.0', sha256='d4e59070fde0290e0bfeece120ff1d2ff1f9573e3f2e6a719fe463c913af25ec') + version('1.3.5', sha256='92e24f3462fb3ad4d8ee724506fba05da2b3ca0626850dd2e637a553e17d69b8') + version('1.0.4', sha256='34bfa5561e6f872dbd85bb30a1b44c5e1be525167abe3932aee8ac06d15f6ed9') + + variant('fsl', default=False, description="Enable fsl support.") + variant('ants', default=False, description="Enable ants support.") + + depends_on('python@3.7:', when='@1.3.3:', type=('build', 'run')) + depends_on('python@3.6:', when='@1.2:', type=('build', 'run')) + depends_on('python@3.5:', type=('build', 'run')) + depends_on('py-setuptools@38.4.1:', when='@1.2.3:', type='build') + depends_on('py-setuptools@30.4.0:', type='build') + depends_on('py-attrs', when='@1.1.4:', type=('build', 'run')) + depends_on('py-jinja2', type=('build', 'run')) + depends_on('py-matplotlib@2.2.0:', when='^python@3.6:', type=('build', 'run')) + depends_on('py-matplotlib@2.2.0:3.1', when='^python@:3.5', type=('build', 'run')) + depends_on('py-nibabel@3.0.1:', when='@1.1.6:', type=('build', 'run')) + depends_on('py-nibabel@2.4.1:', type=('build', 'run')) + depends_on('py-nilearn@0.2.6:0.4,0.5.2:', type=('build', 'run')) + depends_on('py-nipype@1.5.1:', when='@1.3:', type=('build', 'run')) + depends_on('py-nipype@1.3.1:', type=('build', 'run')) + depends_on('py-nitransforms@20:20.1', when='@1.2:', type=('build', 'run')) + depends_on('py-numpy', when='@1.3.3:', type=('build', 'run')) + depends_on('py-packaging', type=('build', 'run')) + depends_on('py-pandas', type=('build', 'run')) + depends_on('py-pybids@0.11.1:', when='@1.3:', type=('build', 'run')) + depends_on('py-pybids@0.9.4:', type=('build', 'run')) + depends_on('py-pyyaml', type=('build', 'run')) + depends_on('py-scikit-image', type=('build', 'run')) + depends_on('py-scikit-image@0.14.4', when='^python@:3.5', type=('build', 'run')) + depends_on('py-scikit-learn', when='@:1.3', type=('build', 'run')) + depends_on('py-scipy', type=('build', 'run')) + depends_on('py-seaborn', type=('build', 'run')) + depends_on('py-svgutils@0.3.4:', when='@1.4:', type=('build', 'run')) + depends_on('py-svgutils@0.3.1', when='@1.3.5', type=('build', 'run')) + depends_on('py-svgutils', type=('build', 'run')) + depends_on('py-transforms3d', type=('build', 'run')) + depends_on('py-templateflow@0.6:', when='@1.3:', type=('build', 'run')) + depends_on('py-templateflow@0.4.1:0.4', when='@:1.0', type=('build', 'run')) + + with when('+fsl'): + depends_on('fsl@5.0.9:', type=('build', 'run')) + with when('+ants'): + depends_on('ants@2.2:', type=('build', 'run')) + + # dependencies that are not yet in spack + # depends_on('afni@Debian-16.2.07:', type=('build', 'run')) + # depends_on('c3d@1:', type=('build', 'run')) + # depends_on('freesurfer@6.0.1:', type=('build', 'run')) |