diff options
Diffstat (limited to 'var/spack/repos/builtin/packages/pacbio-dextractor/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/pacbio-dextractor/package.py | 51 |
1 files changed, 51 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/pacbio-dextractor/package.py b/var/spack/repos/builtin/packages/pacbio-dextractor/package.py new file mode 100644 index 0000000000..75bc553733 --- /dev/null +++ b/var/spack/repos/builtin/packages/pacbio-dextractor/package.py @@ -0,0 +1,51 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class PacbioDextractor(MakefilePackage): + """The Dextractor and Compression Command Library. This is a special + fork required by some pacbio utilities.""" + + homepage = "https://github.com/PacificBiosciences/DEXTRACTOR" + url = "https://github.com/PacificBiosciences/DEXTRACTOR" + + version('2016-08-09', + git='https://github.com/PacificBiosciences/DEXTRACTOR.git', + commit='89726800346d0bed15d98dcc577f4c7733aab4b1') + + depends_on('hdf5') + depends_on('gmake', type='build') + + def edit(self, spec, prefix): + mkdirp(prefix.bin) + makefile = FileFilter('Makefile') + makefile.filter('PATH_HDF5\s*=\s*/sw/apps/hdf5/current', + 'PATH_HDF5 = ' + spec['hdf5'].prefix) + makefile.filter('PATH_HDF5\*s=\s*/usr/local/hdf5', '') + makefile.filter('DEST_DIR\s*=\s*~/bin', 'DEST_DIR = ' + prefix.bin) + gmf = FileFilter('GNUmakefile') + gmf.filter('rsync\s*-av\s*\$\{ALL\}\s*\$\{PREFIX\}/bin', + 'cp ${ALL} ' + prefix.bin) |