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Diffstat (limited to 'var/spack/repos/builtin/packages/py-cnvkit/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/py-cnvkit/package.py | 28 |
1 files changed, 28 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/py-cnvkit/package.py b/var/spack/repos/builtin/packages/py-cnvkit/package.py new file mode 100644 index 0000000000..17d4508b15 --- /dev/null +++ b/var/spack/repos/builtin/packages/py-cnvkit/package.py @@ -0,0 +1,28 @@ +# Copyright 2013-2020 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack import * + + +class PyCnvkit(PythonPackage): + """Copy number variation toolkit for high-throughput sequencing.""" + + homepage = "https://github.com/etal/cnvkit" + url = "https://pypi.io/packages/source/C/CNVkit/CNVkit-0.9.6.tar.gz" + + version('0.9.6', sha256='be889c98a5cf0a994330b8c31c0a65151fb0095fe4e75a1e04118da2516248c2') + + depends_on('py-setuptools', type='build') + depends_on('py-futures@3.0:', type=('build', 'run'), when='^python@:2.7') + depends_on('py-biopython@1.62:', type=('build', 'run')) + depends_on('py-future@0.15.2:', type=('build', 'run')) + depends_on('py-pomegranate@0.9.0:', type=('build', 'run')) + depends_on('py-matplotlib@1.3.1:', type=('build', 'run')) + depends_on('py-numpy@1.9:', type=('build', 'run')) + depends_on('py-pandas@0.20.1:0.24.999', type=('build', 'run')) + depends_on('py-pyfaidx@0.4.7:', type=('build', 'run')) + depends_on('py-pysam@0.10.0:', type=('build', 'run')) + depends_on('py-reportlab@3.0:', type=('build', 'run')) + depends_on('py-scipy@0.15.0:', type=('build', 'run')) |