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Diffstat (limited to 'var/spack/repos/builtin/packages/r-ebseq/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-ebseq/package.py | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-ebseq/package.py b/var/spack/repos/builtin/packages/r-ebseq/package.py new file mode 100644 index 0000000000..3fd13c18b7 --- /dev/null +++ b/var/spack/repos/builtin/packages/r-ebseq/package.py @@ -0,0 +1,33 @@ +# Copyright 2013-2023 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +from spack.package import * + + +class REbseq(RPackage): + """An R package for gene and isoform differential expression analysis of RNA-seq data. + + R/EBSeq is an R package for identifying genes and isoforms differentially + expressed (DE) across two or more biological conditions in an RNA-seq + experiment. Details can be found in Leng et al., 2013. It provides the syntax + required for identifying DE genes and isoforms in a two-group RNA-seq + experiment as well for identifying DE genes across more than two conditions + (the commands for identifying DE isoforms across more than two conditions + are the same as those required for gene-level analysis).""" + + maintainers("pabloaledo") + + bioc = "EBSeq" + + version("2.0.0", commit="f1d4e4419988ab98540739c9349559fd437cb59f") + version("1.40.0", commit="7d1d2a2b4ea0df8cddfb5e57d6431f3948c5c4ca") + + depends_on("r@3.0:", type=("build", "run")) + depends_on("r-bh", type=("build", "run")) + depends_on("r-blockmodeling", type=("build", "run")) + depends_on("r-gplots", type=("build", "run")) + depends_on("r-rcppeigen@0.3.2.9.0:", type=("build", "run")) + depends_on("r-rcpp@0.12.11:", type=("build", "run")) + depends_on("r-testthat", type=("build", "run")) |