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Diffstat (limited to 'var/spack/repos/builtin/packages/r-maldiquant/package.py')
| -rw-r--r-- | var/spack/repos/builtin/packages/r-maldiquant/package.py | 46 |
1 files changed, 46 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/r-maldiquant/package.py b/var/spack/repos/builtin/packages/r-maldiquant/package.py new file mode 100644 index 0000000000..ad1e1bb95f --- /dev/null +++ b/var/spack/repos/builtin/packages/r-maldiquant/package.py @@ -0,0 +1,46 @@ +############################################################################## +# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC. +# Produced at the Lawrence Livermore National Laboratory. +# +# This file is part of Spack. +# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved. +# LLNL-CODE-647188 +# +# For details, see https://github.com/spack/spack +# Please also see the NOTICE and LICENSE files for our notice and the LGPL. +# +# This program is free software; you can redistribute it and/or modify +# it under the terms of the GNU Lesser General Public License (as +# published by the Free Software Foundation) version 2.1, February 1999. +# +# This program is distributed in the hope that it will be useful, but +# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF +# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and +# conditions of the GNU Lesser General Public License for more details. +# +# You should have received a copy of the GNU Lesser General Public +# License along with this program; if not, write to the Free Software +# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA +############################################################################## +from spack import * + + +class RMaldiquant(RPackage): + """A complete analysis pipeline for matrix-assisted laser + desorption/ionization-time-of-flight (MALDI-TOF) and other + two-dimensional mass spectrometry data. In addition to commonly used + plotting and processing methods it includes distinctive features, + namely baseline subtraction methods such as morphological filters + (TopHat) or the statistics-sensitive non-linear iterative peak-clipping + algorithm (SNIP), peak alignment using warping functions, handling of + replicated measurements as well as allowing spectra with different + resolutions.""" + + homepage = "https://cran.r-project.org/package=MALDIquant" + url = "https://cran.r-project.org/src/contrib/MALDIquant_1.16.4.tar.gz" + list_url = "https://cran.r-project.org/src/contrib/Archive/MALDIquant" + + version('1.16.4', '83200e7496d05c5a99292e45d2b11c67') + + depends_on('r-knitr', type=('build', 'run')) + depends_on('r-testthat', type=('build', 'run')) |