summaryrefslogtreecommitdiff
path: root/var/spack/repos/builtin/packages/tcoffee/package.py
diff options
context:
space:
mode:
Diffstat (limited to 'var/spack/repos/builtin/packages/tcoffee/package.py')
-rw-r--r--var/spack/repos/builtin/packages/tcoffee/package.py57
1 files changed, 57 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/tcoffee/package.py b/var/spack/repos/builtin/packages/tcoffee/package.py
new file mode 100644
index 0000000000..0f954b42c7
--- /dev/null
+++ b/var/spack/repos/builtin/packages/tcoffee/package.py
@@ -0,0 +1,57 @@
+##############################################################################
+# Copyright (c) 2013-2016, Lawrence Livermore National Security, LLC.
+# Produced at the Lawrence Livermore National Laboratory.
+#
+# This file is part of Spack.
+# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
+# LLNL-CODE-647188
+#
+# For details, see https://github.com/llnl/spack
+# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
+#
+# This program is free software; you can redistribute it and/or modify
+# it under the terms of the GNU Lesser General Public License (as
+# published by the Free Software Foundation) version 2.1, February 1999.
+#
+# This program is distributed in the hope that it will be useful, but
+# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
+# conditions of the GNU Lesser General Public License for more details.
+#
+# You should have received a copy of the GNU Lesser General Public
+# License along with this program; if not, write to the Free Software
+# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
+##############################################################################
+from spack import *
+
+
+class Tcoffee(MakefilePackage):
+ """T-Coffee is a multiple sequence alignment program."""
+
+ homepage = "http://www.tcoffee.org/"
+ url = "https://github.com/cbcrg/tcoffee"
+
+ version('2017-08-17', git='https://github.com/cbcrg/tcoffee.git', commit='f389b558e91d0f82e7db934d9a79ce285f853a71')
+
+ depends_on('perl', type=('build', 'run'))
+ depends_on('blast-plus')
+ depends_on('dialign-tx')
+ depends_on('viennarna')
+ depends_on('clustalw')
+ depends_on('tmalign')
+ depends_on('muscle')
+ depends_on('mafft')
+ depends_on('pcma')
+ depends_on('poamsa')
+ depends_on('probconsrna')
+
+ build_directory = 'compile'
+
+ def build(self, spec, prefix):
+ with working_dir(self.build_directory):
+ make('t_coffee')
+
+ def install(self, spec, prefix):
+ mkdirp(prefix.bin)
+ with working_dir(self.build_directory):
+ install('t_coffee', prefix.bin)