diff options
Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/cnvnator/package.py | 17 |
1 files changed, 14 insertions, 3 deletions
diff --git a/var/spack/repos/builtin/packages/cnvnator/package.py b/var/spack/repos/builtin/packages/cnvnator/package.py index 56359c291a..42ee4fbf03 100644 --- a/var/spack/repos/builtin/packages/cnvnator/package.py +++ b/var/spack/repos/builtin/packages/cnvnator/package.py @@ -15,13 +15,15 @@ class Cnvnator(MakefilePackage): version('0.3.3', sha256='58c5acf61f9a1e5febf546c196f8917a5e084b729e5c4cfd3eba83471b3fe5c1') - depends_on('samtools') + depends_on('samtools@:1.13') depends_on('htslib') depends_on('root') depends_on('bzip2') depends_on('curl') - depends_on('lzma') + depends_on('xz') depends_on('zlib') + depends_on('libdeflate') + depends_on('openssl') def edit(self, spec, prefix): makefile = FileFilter('Makefile') @@ -35,9 +37,18 @@ class Cnvnator(MakefilePackage): makefile.filter('$(CXX)', '$(CXX) $(CXXFLAGS)', string=True) # Replace -I$(SAMDIR) with -I$(SAMINC) makefile.filter('-I$(SAMDIR)', '-I$(SAMINC)', string=True) + # Link more libs + ldflags = [ + spec['zlib'].libs.ld_flags, + spec['bzip2'].libs.ld_flags, + spec['curl'].libs.ld_flags, + spec['xz'].libs.ld_flags, + spec['libdeflate'].libs.ld_flags, + spec['openssl'].libs.ld_flags, + ] makefile.filter('^override LIBS.*', - 'override LIBS += -lz -lbz2 -lcurl -llzma -lcrypto') + 'override LIBS += {0}'.format(' '.join(ldflags))) def build(self, spec, prefix): make('ROOTSYS={0}'.format(spec['root'].prefix), |