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Diffstat (limited to 'var')
| -rw-r--r-- | var/spack/repos/builtin/packages/seacr/package.py | 33 |
1 files changed, 33 insertions, 0 deletions
diff --git a/var/spack/repos/builtin/packages/seacr/package.py b/var/spack/repos/builtin/packages/seacr/package.py new file mode 100644 index 0000000000..fafe5e6c9d --- /dev/null +++ b/var/spack/repos/builtin/packages/seacr/package.py @@ -0,0 +1,33 @@ +# Copyright 2013-2024 Lawrence Livermore National Security, LLC and other +# Spack Project Developers. See the top-level COPYRIGHT file for details. +# +# SPDX-License-Identifier: (Apache-2.0 OR MIT) + +import os + +from spack.package import * + + +class Seacr(Package): + """SEACR (Sparse Enrichment Analysis for CUT&RUN) is intended to call peaks and + enriched regions from sparse CUT&RUN or chromatin profiling data in which the + background is dominated by zeros""" + + homepage = "https://github.com/FredHutch/SEACR" + git = "https://github.com/FredHutch/SEACR.git" + + license("GPL-2.0-only", checked_by="A-N-Other") + + version("1.4-b2", tag="v1.4-beta.2", commit="5179a70494eb129fcb1d640177de73f6509654e7") + version("1.3", tag="v1.3", commit="5a0efe59f06fb17cf9d34d415bb0c1a1f7a77a3c", preferred=True) + + # Dependencies as per the README.md + depends_on("r", type="run") + depends_on("bedtools2", type="run") + + def install(self, spec, prefix): + mkdirp(prefix.bin) + script_name = f"SEACR_{self.version.up_to(2)}" + os.chmod(f"{script_name}.sh", 0o755) + install(f"{script_name}.sh", prefix.bin.SEACR) + install(f"{script_name}.R", prefix.bin) |