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2018-09-18Fix version parsing for cistem package (#9260)Adam J. Stewart3-1/+4
Adds 'code' to the list of suffixes that are excluded from version parsing of URLs, such that if a URL contains the string 'cistem-1.0.0-beta-source-code', a version X will substitute in to produce a URL with cistem-X-source-code ('source' was already excluded). The 'cistem' package version is updated to make use of this (and fix a fetching bug with the cistem package). A unit test is added to check this parsing case.
2018-09-18sst-macro package: add versions and variants (#9271)sknigh1-16/+55
Added variants for: mpi support, clang skeletonizer, building as static and/or shared, and more.
2018-09-18hadoop package: fix url and checksum (#9263)Geoffrey Lentner1-2/+2
2018-09-18apple-libunwind: update path to library (#9265)Geoffrey Oxberry1-3/+17
2018-09-18new package: rclone (#9268)Levi Baber1-0/+42
2018-09-18libhio: add patch for 1.4.1.2 release (#9270)Howard Pritchard2-0/+33
Turns out that there was a configury problem in libhio which caused issues building the package on non-cray systems, aka when using mpicc and friends. Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2018-09-18xsbench: added v18 (#9269)Christoph Junghans1-0/+1
2018-09-18Packages/candle benchmarks (#9266)Christoph Junghans2-2/+3
* candle-benchmarks: added v0.1 * ecp-proxy-apps: v1.0 now depends on candle-benchmarks@0.0
2018-09-16star - added latest versions with shasum (#9257)Douglas Duckworth1-5/+12
* star - added latest versions with shasum * star - added latest versions with shasum
2018-09-16coinhsl: add @2015.06.23, explain versions, SHA256 (#9258)Geoffrey Oxberry1-2/+19
2018-09-15Update rdma-core : new version and conflict with intel (#9255)Pramod Kumbhar1-2/+4
* Update rdma-core : new version and conflict with intel * address review comments
2018-09-15changed to new install_tree formalism (#9181)toffer931-0/+53
2018-09-15gdb: add lzma support by default (#9247)Matthias Diener1-1/+1
This is required at least on RedHat/Fedora. Many (most?) other people distribute gdb with this support enabled: http://tomszilagyi.github.io/2018/03/Remote-gdb-with-stl-pp https://bugzilla.redhat.com/show_bug.cgi?id=1596490
2018-09-14breakdancer: fix several issues (#9251)Levi Baber1-4/+29
* add perl dependencies * put bam2cfg in path * fix perl dir
2018-09-14Feature/py picrust (#9184)Miles Perry1-1/+1
2018-09-14rdma-core: Fix missing pkg-config dependency (#9195)Michael Kuhn1-0/+1
rdma-core requires pkg-config, otherwise libnl can not be found.
2018-09-14jdk: added 10.0.2_13 (#9203)Justin Stanley1-0/+2
2018-09-14Updating amrvis to allow building with profiling support. (#9204)Jon Rood1-5/+28
* Updating amrvis to allow building with profiling support. * Setting MPI default to true.
2018-09-14Update py-libensemble package to v0.3.0 (#9210)Stephen Hudson1-1/+2
2018-09-14add eigen@3.3.5 (#9212)Stephen McDowell1-0/+1
2018-09-14hypre: patch +shared@2.13.0: on darwin (#9220)Geoffrey Oxberry3-1/+1143
2018-09-14plumed: updating plumed to latest version (#9227)snehring1-0/+1
2018-09-14Build Python 3.7 with external libffi. (#9245)Sergey Kosukhin4-6/+45
2018-09-14add opencv@3.4.3 (#9213)Stephen McDowell1-0/+1
2018-09-14patch flann // gcc // cmake@3.11+ (#9214)Stephen McDowell2-0/+27
See: https://github.com/mariusmuja/flann/issues/369
2018-09-14Charmpp: rename charm to charmpp according to ++ conventions (#9216)Abhinav Bhatele5-3/+3
* Charmpp: rename charm to charmpp according to ++ conventions * modify packages that depend on charmpp
2018-09-14py-spectra: new version (#9224)Levi Baber1-0/+2
2018-09-14OpenCoarrays: update v2.2.0 (#9215)Mario Melara2-1/+32
This commit adds a patch that prevents the package from hanging. The package would hang because CMakeLists would look for a system MPI. This patch changes the behavior.
2018-09-14miniamr: added v1.4.1 (#9225)Christoph Junghans1-0/+1
2018-09-14py-h5py: add version 2.8.0 (#9231)Adam J. Stewart1-9/+14
2018-09-14portcullis: new package starting at 1.1.2 (#9218)Justin Stanley1-0/+73
2018-09-14miniQMC: add newer releases and ecp-proxy-app tag (#9233)Abhinav Bhatele1-1/+3
2018-09-14ipopt: add debug variant (#9223)Geoffrey Oxberry1-0/+10
2018-09-14hypre: add debug variant (#9222)Geoffrey Oxberry1-0/+7
2018-09-14py-multiqc: needs newer py-spectra (#9226)Levi Baber1-1/+4
2018-09-14py-networkx: new version (#9241)Levi Baber1-2/+5
2018-09-14py-decorator: new version (#9240)Levi Baber1-0/+1
2018-09-14py-markdown: fix url and hashes (#9235)Levi Baber1-12/+14
2018-09-14perl-gdgraph-histogram: new package (#9250)Levi Baber1-0/+35
2018-09-14bolt: new package starting at 1.0b1 (#9253)Ken Raffenetti1-0/+50
2018-09-14metasv: add required dependencies (#9254)Justin Stanley1-0/+2
* add runtime deps * revert to strict dep versions
2018-09-14argobots: new package starting at 1.0b1 (#9238)Ken Raffenetti1-0/+41
2018-09-14rmats: new package starting at 4.0.2 (#9243)Justin Stanley1-0/+51
* new package starting at 4.0.2
2018-09-14motioncor2 - added version 1.1.0 and removed old, unlisted versions (#9229)Douglas Duckworth1-5/+9
2018-09-14gdb: add version 8.2 (#9246)Matthias Diener1-0/+1
2018-09-14gatk: new version (#9202)Justin Stanley1-3/+5
* gatk: added 4.0.8.1, fixed binary install * gatk: fix flake8 conflict * gatk: improve comments and modify install
2018-09-14mxnet: added 1.3.0 (#9236)Justin Stanley1-10/+40
* add version 1.3.0 * change build parameters, install process * mxnet will not compile against spack's nnvm and dmlc so we must use the distributions provided by the source package. * also removed 'bin' installation as mxnet is just a shared library. * improve BLAS linking * remove unnecessary args * added variant for python bindings
2018-09-14Added Kibana package, added Elasticsearch to 6.4.0 (#9239)sknigh2-0/+41
* Added kibana, updated elasticsearch * Update elastic search to 6.4
2018-09-14Hwloc add update 2.0.2 (#9244)Daniel Topa1-1/+2
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-09-14py-colormath: new version, requires newer networkx (#9237)Levi Baber1-0/+2
* py-colormath: new version requires newer networkx