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2020-04-08environment-modules: add version 4.5.0 (#15938)Xavier Delaruelle1-2/+3
Add new version 4.5.0 and update quarantine variable list to also include LD_PRELOAD in addition to LD_LIBRARY_PATH (to avoid side-effect when the first depends on the latter).
2020-04-07Update hugo version and add extended variant (#15933)George Hartzell1-1/+8
- Add info for version 0.68.3 - Add variant to package that enables the "extended" features. It works with both of the existing versions (not sure how far back it goes, but confirmed that it's valid fro 0.53). Tested on OS X with go@1.14.1.
2020-04-07Add new package: open-isns (#15914)darmac1-0/+29
* Add new package: open-isns * refine args
2020-04-07py-cyvcf2: new package at 0.11.7 (#15908)Justin S1-0/+25
* py-cyvcf2: new package at 0.11.7 * py-cyvcf2: update dependencies
2020-04-07py-yahmm: new package at 1.1.3 (#15909)Justin S1-0/+22
* py-yahmm: new package at 1.1.3 * py-yahmm: update dependencies
2020-04-07py-unidecode: new package at 1.1.1 (#15906)Justin S1-0/+19
* py-unidecode: new package at 1.1.1 * py-unidecode: update py-setuptools dep type * py-unidecode: add python version
2020-04-07py-utils: new package at 1.0.1 (#15904)Justin S1-0/+19
* py-utils: new package at 1.0.1 * py-utils: update py-setuptools dep type * py-utils: fix dependency condition
2020-04-07py-args: new package at 0.1.0 (#15903)Justin S1-0/+18
* py-args: new package at 0.1.0 * py-args: update dependencies
2020-04-07openfoam: modified flex to be a build + link dependency (#15917)Massimiliano Culpo1-1/+1
fixes #15863 Since openfoam-org needs FlexInclude.h "flex" needs to be also a link dependency.
2020-04-07update gasnet spackage cmake args (#15920)ktsai71-10/+35
* update gasnet spackage cmake args * fix style errors * trailing whitespace
2020-04-07updates CCTools to version 7.1.2 (#15923)Benjamin Tovar1-1/+2
2020-04-07Make use of Spack's builtin CUDA build system. (#15924)Nichols A. Romero1-16/+3
2020-04-07Addded Draco@7.5.0:7.6.0 (#15926)Robert Pavel1-0/+2
Updated version hashes for draco spackage to specify 7.5 and 7.6
2020-04-07Fix lua build, missing deref of self for spec (#15927)George Hartzell1-1/+1
Looks like something changed and a case was missed. Function doesn't have a spec arg, need to dereference it off of self. Builds on OS X.
2020-04-07update versions: petsc4py@3.13.0 and slepc4py@3.13.0 (#15928)Satish Balay2-0/+4
2020-04-07[acts-core] Add version 0.21 (#15922)Hadrien G1-1/+2
* Add ACTS v0.21 * Update var/spack/repos/builtin/packages/acts-core/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-07pipelines: Document dynamic generation limitationsScott Wittenburg1-1/+23
2020-04-07ucx: add additional variants (#15925)Carson Woods1-0/+38
* Add more variants to ucx * Fix flake8 issue
2020-04-07slepc 3.13 develop updates (#15897)Jose E. Roman1-4/+21
* slepc: updates for @devel - +arpack now works with int64 - +blopex add conflict with int64 - switch to using --with-arpack-lib [from --with-arpack-lib] with current slepc - use updated blopex with current slepc * slepc: conflict with blopex should be in all versions * slepc: add new downloads * slepc: add whitespace around operator Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2020-04-07New package(s): py-pydeps and py-stdlib-list (#15828)Andrew W Elble2-0/+37
* New package(s): py-pydeps and py-stdlib-list * requested changes * Update var/spack/repos/builtin/packages/py-stdlib-list/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-07Add new package: shark (#15913)darmac1-0/+25
2020-04-07update OpenFOAM patch versions (#15916)Mark Olesen2-1/+11
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-04-07cryptsetup: restrict the version of automake if @2.2.1 (#15918)Massimiliano Culpo1-0/+2
* cryptsetup: restrict the version of automake if @2.2.1 fixes #15706 * Update var/spack/repos/builtin/packages/cryptsetup/package.py Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-07NAG Compiler 7.0 (Build 7014) download checksum (#15899)Themos Tsikas1-1/+1
* NAG Compiler 7.0 (Build 7009) download checksum * NAG Compiler 7.0 (Build 7014) download checksum
2020-04-07New package: boinc-client (#15770)Jennifer Herting2-0/+76
* [boinc-client] Created template * [boinc-client] removed non-client version * [boinc-client] added description and homepage * [boinc-client] specifically specify this as a client release * [boinc-client] added dependencies * [boinc-client] added variant: manager * [boinc-client] added graphics variant * [boinc-client] added dependency version specificity * [boinc-client] systemd install path fix * [boinc-client] added sqlite dependency * [boinc-client] flake8 * [boinc-client] cleaned up left over fixme
2020-04-07Add build number to Arm compiler version identification (#15809)LPettey-Arm2-2/+22
* Add capability for detecting build number for Arm compilers * Fixing fleck8 errors and updating test_arm_version_detection function for more detailed Arm compielr version detection * Ran flake8 locally and corrected errors * Altering Arm compielr version check to remove else clause and be more consistent with other compielr version checks. Added test case so both the 'if' and 'else' conditionals of the Arm compiler version check have a test case Co-authored-by: EC2 Default User <ec2-user@ip-172-31-7-135.us-east-2.compute.internal>
2020-04-07intel: fixed version number (update4 is 18.0.5) (#15915)Massimiliano Culpo1-2/+4
fixes #15811 See https://software.intel.com/en-us/articles/intel-compiler-and-composer-update-version-numbers-to-compiler-version-number-mapping
2020-04-07ppOpen-APPL/FEM: New package. (#15911)Toyohisa Kameyama2-0/+132
* ppOpen-APPL/FEM: New package. * typo fix. Update patch.
2020-04-07Don't run linux build tests for doc PRs (#15895)Adam J. Stewart1-0/+2
2020-04-06Simplify Build Error template (#15864)Adam J. Stewart1-66/+20
2020-04-06Package rename: DNNL -> oneDNN (#15910)Adam J. Stewart3-101/+101
2020-04-06fish: add version 3.1.0 and switch to cmake (#15812)Matthias Diener1-4/+2
Versions < 3 do not support building with CMake.
2020-04-06Update nano and fix coreutils on Darwin (#15883)Diego Magdaleno2-3/+20
* Fixed building coreutils on Darwin * Bump nano version to 4.9 * Coreutils: Add program prefix g so we don't conflict with Apple utilities * Fix intendation * Make format more spack like * Removed unnecesary changes * Merge branch 'develop' of github.com:DiegoMagdaleno/spack into develop Fix linking libgit2 on Darwin * Revert "Merge pull request #3 from spack/develop" This reverts commit 58dbbdb82bfa4aa689758971eb423ae2b9d2c293, reversing changes made to dd7a413f4870fc2778f801c882a50cfade18fe97. * Revert "Revert "Merge pull request #3 from spack/develop"" This reverts commit f956aa7b135c39ea0eb4ba6b9329714067098a7c. * Revert "Merge branch 'develop' of github.com:DiegoMagdaleno/spack into develop" This reverts commit 50321f798674ec30d5c62fe696b4f8bccef6ab3d.
2020-04-06new package: nccl-tests (#15890)Andrew W Elble1-0/+36
* new package: nccl-tests * fix dependency types
2020-04-06new package: py-tensorboard-plugin-wit (#15898)Andrew W Elble1-0/+63
* new package: py-tensorboard-plugin-wit dependency for py-tensorboard >= 2.2.0 * incorporate feedback
2020-04-06pdt: add PIC support as variant (#15851)Carson Woods1-0/+5
* Add fPIC support as variant * Fix variant to use compiler agnostic fPIC option
2020-04-06nccl: supports infiniband/RoCE since 2.3.5-5 (#15889)Andrew W Elble1-0/+1
loads libibverbs via dlopen(), add dependency on rdma-core
2020-04-06new package: py-google-auth-oauthlib (#15900)Andrew W Elble1-0/+18
2020-04-06Docs: fix Spack Environments command (#15891)Adam J. Stewart1-1/+1
2020-04-06py-smart-open: fix url/checksum, add deps (#15892)Adam J. Stewart1-2/+6
2020-04-06nanomsg: add new Package (#15894)Dr. Christian Tacke1-0/+17
2020-04-06new packages: libbacktrace, libpfm, numap, numamma (#15868)François Trahay3-0/+72
* new packages: libbacktrace, libpfm, numap, numamma * numap: use the existing libpfm4 package * formatting
2020-04-06Blacklist Lmod variable modifications when sourcing files (#15778)Massimiliano Culpo3-1/+24
fixes #15775 Add all the variables listed here: https://lmod.readthedocs.io/en/latest/090_configuring_lmod.html to the list of those blacklisted when constructing environment modifications by sourcing files.
2020-04-06Source devnull in environment_after_sourcing_files (closes #15775) (#15791)Jonathon Anderson1-1/+2
spack.util.environment_after_sourcing_files compares the local environment against a shell environment after having sourced a file; but this ends up including the default shell profile and rc, which might differ from the local environment. To change this, compare against the default shell environment, expressed here as 'source /dev/null'.
2020-04-05boost: boost-python in 1.72.0 broken with cxxstd=98 (#15885)Christoph Junghans2-1/+4
* boost: boost-python in 1.72.0 broken with cxxstd=98 * py-espressopp: depend on boost with cxxstd=11
2020-04-05py-spatialist: add maintainer and new version, fix url and deps (#15878)Adam J. Stewart1-5/+13
2020-04-05py-flake8-polyfill: fix url and deps (#15872)Adam J. Stewart1-4/+4
2020-04-05py-gensim: fix url and deps, add maintainer (#15870)Adam J. Stewart1-13/+12
2020-04-05py-humanfriendly: add new version, fix url and deps (#15873)Adam J. Stewart1-2/+5
2020-04-05py-pep8-naming: add new version, fix url and deps (#15874)Adam J. Stewart1-5/+6
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