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2023-06-05openexr: add v3.1.7 (#38147)Alec Scott1-0/+1
2023-06-05pgdspider: add v2.1.1.5 (#38151)Alec Scott1-0/+1
2023-06-05primer3: add v2.6.1 (#38152)Alec Scott1-0/+1
2023-06-05sbt: add v1.8.3 (#38154)Alec Scott1-0/+1
2023-06-05signify: add v31 (#38156)Alec Scott1-0/+1
2023-06-05madx: add v5.09.00 (#38139)Alec Scott1-0/+1
2023-06-05papi: update git URL (#38042)Umashankar Sivakumar1-1/+1
2023-06-05at-spi2-core: add v2.48.3 (#38162)Alec Scott1-0/+1
2023-06-05grep: add v3.11 (#38163)Alec Scott1-0/+1
2023-06-05hugo: add v0.112.7 (#38164)Alec Scott1-0/+1
2023-06-04py-ipython: add 8.14.0 (#38113)Manuela Kuhn1-0/+3
2023-06-04py-iso8601: add 1.1.0 (#38110)Manuela Kuhn1-0/+1
2023-06-04py-ipykernel: add 6.23.1 (#38111)Manuela Kuhn1-0/+1
2023-06-04py-jaxlib: patch bazel server cpu limit (#37548) (#38090)Pariksheet Nanda1-0/+10
2023-06-04GMT: add new versions (#37921)Adam J. Stewart1-77/+93
* GMT: add new versions * [@spackbot] updating style on behalf of adamjstewart --------- Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-06-04py-htseq: add 2.0.3, switch to PyPI (#37935)George Young1-7/+19
* py-htseq: add 0.12.3, switching over to new GitHub repo * py-htseq: add 0.12.3, switching over to new GitHub repo Style fixes * py-htseq: add 2.0.3, switch to PyPI * py-htseq: add 2.0.3, switch to PyPI * Update package.py * Update var/spack/repos/builtin/packages/py-htseq/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Removing SWIG --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-04py-hatch-fancy-pypi-readme: add 23.1.0 (#38075)Manuela Kuhn1-1/+1
2023-06-04py-hatchling: add 1.17.0 (#38076)Manuela Kuhn1-0/+1
2023-06-04py-humanize: add 4.6.0 (#38077)Manuela Kuhn1-8/+10
2023-06-04py-identify: add 2.5.24 (#38088)Manuela Kuhn1-2/+1
2023-06-04py-imageio: add 2.30.0 (#38089)Manuela Kuhn1-3/+1
2023-06-04votca: stable branch was removed (#38043)Christoph Junghans1-1/+0
2023-06-04py-gast: add 0.5.4 (#38054)Manuela Kuhn2-2/+4
* py-gast: add 0.5.4 * py-pythran: add 0.12.2 and restict upper bound of py-gast
2023-06-04libbson: add v1.23.4 (#38126)Alec Scott1-0/+1
2023-06-04hyperfine: add v1.16.1 (#38108)Alec Scott1-0/+1
2023-06-03llvm: optionally build compiler-rt, libcxx and libunwind as runtimes (#32476)Sergey Kosukhin19-463/+323
* llvm: replace +omp_as_runtime with omp=runtime * llvm: fetch 'libomp-libflags-as-list.patch' from upstream repo * llvm: replace 'llvm14-hwloc-ompd.patch' with the official fix from upstream repo * llvm: fix-up for the black reformatting * llvm: fetch 'constexpr_longdouble.patch' from upstream repo * llvm: optionally build libcxx as a runtime * llvm: fetch 'llvm5-sanitizer-ustat.patch' from upstream repo * llvm: update 'sanitizer-ipc_perm_mode.patch' * llvm: refactor compiler conflicts when libcxx=project * llvm: fetch 'llvm_python_path.patch' from upstream repo * llvm: update comments and condition for 'xray_buffer_queue-cstddef.patch' * llvm: optionally build compiler-rt as a runtime * llvm: fetch 'lldb_external_ncurses-10.patch' from upstream repo * llvm: fetch 'llvm_py37.patch' from upstream repo * llvm: rename variant 'internal_unwind' to 'libunwind' * llvm: optionally build libunwind as a runtime * llvm: extend the list of maintainers * llvm: allow for explicit '~clang~flang~libomptarget~lldb~omp_debug~z3' * llvm: fetch 'llvm5-lld-ELF-Symbols.patch' from FreeBSD port repo * llvm: fetch most of 'missing-includes.patch' from upstream repo and reuse 'llvm-gcc11.patch' * llvm: regroup patches for missing include directives and drop compiler constraints for them * llvm: fetch 'llvm-gcc11.patch' from upstream repo * llvm: fetch 'no_cyclades.patch' from upstream repo * llvm: update comments and condition for 'no_cyclades9.patch' * llvm: rename variant 'omp' to 'openmp' * llvm: constrain and rename variant 'omp_tsan' to 'libomp_tsan' * llvm: rename variant 'omp_debug' to 'libomptarget_debug' * llvm: do not apply same patch twice * llvm: constrain and document the '*-thread.patch' patches * llvm: document the '~lld+libomptarget' conflict * llvm: update comments for the 'D133513.diff' patch
2023-06-03Add explicit CMake .libs implementation that returns an empty list; same for ↵Peter Scheibel1-0/+16
.headers (#35816)
2023-06-03c-blosc: add v1.21.4 (#37973)Alec Scott1-0/+1
2023-06-03lcio: Add latest version 2.20 (#38078)Thomas Madlener1-0/+1
2023-06-03botan: checksum new versions and enable external find (#38081)Martin Aumüller1-0/+10
* botan: checksum new versions, including new major version 3 breaks API * botan: support external find
2023-06-03sqlite: add 3.42.0 (#38091)Michael Kuhn1-1/+4
2023-06-03py-hatch-fancy-pypi-readme: depends_on when typo (#38103)Wouter Deconinck1-2/+2
2023-06-02gnupg: add v2.4.2 (#38059)Massimiliano Culpo1-0/+1
* gnupg: add v2.4.2 * [@spackbot] updating style on behalf of alalazo --------- Co-authored-by: alalazo <alalazo@users.noreply.github.com>
2023-06-02sz: add versions v2.1.12.5 and v2.1.12.4 (#38060)willdunklin1-0/+4
2023-06-02py-flask: add 2.3.2, py-blinker: add 1.6.2, py-werkzeug: add 2.3.4 (#38025)Manuela Kuhn3-7/+13
2023-06-02py-exceptiongroup: add 1.1.1 (#38018)Manuela Kuhn1-1/+1
2023-06-02Add py-gmxapi version 0.4.2 (#38053)M. Eric Irrgang1-1/+2
2023-06-02singularityce: add v3.11.3 (#38055)Sam Grayson1-0/+1
2023-06-01py-formulaic: add 0.6.1 (#38035)Manuela Kuhn1-1/+1
2023-06-01double-batched-fft-library: patch to add search paths to findOpenCL.cmake ↵Sean Koyama2-0/+44
(#36355) * double-batched-fft-library: PATCH: add search paths to find libOpenCL * Apply patch up to version 0.3.6
2023-06-01lua-luafilesystem: update source URL and improve rockspec detection (#36692)Sean Koyama1-5/+27
* lua-luafilesystem: updated sources to new URL. Changed versioning to dot-separated versions. * lua-luafilesystem: override install phase to find correct rockspec * lua-luafilesystem: improved rockspec detection * lua-luafilesystem: added lua version constraint for older versions
2023-06-01py-docutils: add 0.20.1 (#38001)Manuela Kuhn1-4/+1
2023-06-01py-fonttools: add 4.39.4 (#38027)Manuela Kuhn1-2/+2
2023-06-01py-future: add 0.18.3 (#38041)Manuela Kuhn1-48/+9
* py-future: add 0.18.3 * Update var/spack/repos/builtin/packages/py-future/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-01py-executing: add 1.2.0 (#38019)Manuela Kuhn1-0/+1
2023-06-01Memoize a few hot functions during module file generation (#37739)Massimiliano Culpo5-13/+16
2023-06-01Adding libpsm3 package (#37444)Ted Stern1-0/+60
* Adding libpsm3 package * Make changes suggested by flake8 * Make one more flake8-suggested change, blank line after 'import os' * Change to standard header to pass flake8 tests * Update doc string, remove unnecessary comments * Reviewer-recommende changes * Alphabetize variants * Use helper functions * Change quotes to pass spack style check
2023-06-01py-archspec: add v0.2.1 (#38014)Massimiliano Culpo1-0/+1
2023-06-01Fix OpenCV detection on Ubuntu (#35336)Tobias Ribizel1-12/+17
* fix OpenCV detection on Ubuntu * Update package.py * Simplify version detection * remove superfluous `return`
2023-06-01py-datalad-neuroimaging: add 0.3.3 (#38017)Manuela Kuhn1-0/+7
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